Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G020120 Citrullus lanatus HOM05D005603 ORTHO05D006944 6.5e-240 833.6 396 100.0
CsaV3_6G046890 Cucumis sativus L. HOM05D005603 ORTHO05D006944 8.8e-237 823.2 397 98.7
MELO3C007885.2 Cucumis melo HOM05D005603 ORTHO05D006944 1.3e-235 819.3 397 98.0
Sed0002868 Sechium edule HOM05D005603 ORTHO05D006944 1.3e-232 809.3 398 97.0
QL06p033966 Quercus lobata HOM05D005603 ORTHO05D006944 3.0e-221 771.5 400 91.5
Sed0017160 Sechium edule HOM05D005603 ORTHO05D006944 3.4e-220 768.1 401 91.8
COL.COLO4_21962 Corchorus olitorius HOM05D005603 ORTHO05D006944 7.5e-220 766.9 399 90.7
Manes.02G101300 Manihot esculenta HOM05D005603 ORTHO05D006944 9.8e-220 766.5 395 90.9
Prupe.7G165200 Prunus persica HOM05D005603 ORTHO05D006944 3.1e-218 761.5 402 89.6
TWI09G0997 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 4.1e-218 761.1 398 89.2
Glyma.01G168600 Glycine max HOM05D005603 ORTHO05D006944 1.2e-217 759.6 404 88.4
CANSAT01G2298 Cannabis sativa HOM05D005603 ORTHO05D006944 5.9e-217 757.3 394 89.8
Gohir.A02G169100 Gossypium hirsutum HOM05D005603 ORTHO05D006944 5.9e-217 757.3 399 89.5
CiPaw.07G056000 Carya illinoinensis HOM05D005603 ORTHO05D006944 7.7e-217 756.9 403 90.1
MD15G1249000 Malus domestica HOM05D005603 ORTHO05D006944 7.7e-217 756.9 400 89.2
FvH4_1g12160 Fragaria vesca HOM05D005603 ORTHO05D006944 1.0e-216 756.5 402 89.1
Gohir.D03G010900 Gossypium hirsutum HOM05D005603 ORTHO05D006944 1.0e-216 756.5 399 89.2
Gorai.003G011300 Gossypium raimondii HOM05D005603 ORTHO05D006944 1.0e-216 756.5 399 89.2
Aqoxy5G01490 Aquilegia oxysepala HOM05D005603 ORTHO05D006944 2.3e-216 755.4 401 89.0
Thecc.01G023100 Theobroma cacao HOM05D005603 ORTHO05D006944 2.3e-216 755.4 399 89.7
VMungo1215G2039 Vigna mungo HOM05D005603 ORTHO05D006944 1.5e-215 752.7 404 87.6
Nn5g29214 Nelumbo nucifera HOM05D005603 ORTHO05D006944 2.5e-215 751.9 401 87.8
Glyma.11G074800 Glycine max HOM05D005603 ORTHO05D006944 3.3e-215 751.5 404 87.4
Potri.005G117200 Populus trichocarpa HOM05D005603 ORTHO05D006944 3.3e-215 751.5 395 90.1
Ca_24898_v3 Cicer arietinum L. HOM05D005603 ORTHO05D006944 4.2e-215 751.1 404 86.9
CSS0040106 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 5.5e-215 750.7 403 89.1
Eucgr.I02369 Eucalyptus grandis HOM05D005603 ORTHO05D006944 5.5e-215 750.7 402 87.8
TPR.G2333 Trifolium pratense HOM05D005603 ORTHO05D006944 7.2e-215 750.4 404 86.4
HanXRQChr16g0531111 Helianthus annuus HOM05D005603 ORTHO05D006944 1.6e-214 749.2 401 88.0
Phvul.002G111500 Phaseolus vulgaris HOM05D005603 ORTHO05D006944 2.1e-214 748.8 404 86.6
Sc03g0003440 Simmondsia chinensis HOM05D005603 ORTHO05D006944 2.1e-214 748.8 401 87.8
Potri.007G015800 Populus trichocarpa HOM05D005603 ORTHO05D006944 4.7e-214 747.7 396 89.1
TAR628G0819 Trochodendron aralioides HOM05D005603 ORTHO05D006944 6.1e-214 747.3 401 88.0
AUR62007651 Chenopodium quinoa HOM05D005603 ORTHO05D006944 8.0e-214 746.9 401 86.8
Nitab4.5_0008176g0030 Nicotiana tabacum HOM05D005603 ORTHO05D006944 2.3e-213 745.3 418 84.4
arahy.Tifrunner.gnm1.ann1.V913IW Arachis hypogaea HOM05D005603 ORTHO05D006944 3.0e-213 745.0 404 86.4
Medtr5g021520 Medicago truncatula HOM05D005603 ORTHO05D006944 3.0e-213 745.0 405 86.2
Sopen02g029190 Solanum pennellii HOM05D005603 ORTHO05D006944 3.0e-213 745.0 403 87.3
Psat2g155920 Pisum sativum HOM05D005603 ORTHO05D006944 6.8e-213 743.8 404 86.1
MD02G1111100 Malus domestica HOM05D005603 ORTHO05D006944 8.9e-213 743.4 400 87.8
Lj2g0023828 Lotus japonicus HOM05D005603 ORTHO05D006944 1.5e-212 742.7 409 86.1
RcHm_v2.0_Chr2g0099911 Rosa chinensis HOM05D005603 ORTHO05D006944 2.6e-212 741.9 402 87.6
SGA_v2.0_scaffold47G17673 Striga asiatica HOM05D005603 ORTHO05D006944 4.4e-212 741.1 409 85.6
TAR376G0194 Trochodendron aralioides HOM05D005603 ORTHO05D006944 5.7e-212 740.7 402 88.3
THA.LOC104819186 Tarenaya hassleriana HOM05D005603 ORTHO05D006944 9.8e-212 740.0 399 87.0
Hma1.2p1_0743F.1_g211450 Hydrangea macrophylla HOM05D005603 ORTHO05D006944 1.3e-211 739.6 414 86.7
GSVIVG01018824001 Vitis vinifera HOM05D005603 ORTHO05D006944 1.7e-211 739.2 390 90.3
MSTRG.15764 Avicennia marina HOM05D005603 ORTHO05D006944 2.2e-211 738.8 402 86.8
PSO541G2355 Papaver somniferum HOM05D005603 ORTHO05D006944 8.3e-211 736.9 402 86.6
PSO675G2068 Papaver somniferum HOM05D005603 ORTHO05D006944 8.3e-211 736.9 402 86.6
Hund14030 Selenicereus undatus HOM05D005603 ORTHO05D006944 4.1e-210 734.6 401 85.3
Duzib147G0771 Durio zibethinus HOM05D005603 ORTHO05D006944 1.2e-209 733.0 387 89.1
DCAR_021493 Daucus carota HOM05D005603 ORTHO05D006944 1.6e-209 732.6 399 86.0
arahy.Tifrunner.gnm1.ann1.8YZ064 Arachis hypogaea HOM05D005603 ORTHO05D006944 2.7e-209 731.9 433 80.8
Ciclev10025760m.g Citrus clementina HOM05D005603 ORTHO05D006944 7.8e-209 730.3 401 85.0
Hund16476 Selenicereus undatus HOM05D005603 ORTHO05D006944 1.0e-208 729.9 432 81.2
Carub.0005s1753 Capsella rubella HOM05D005603 ORTHO05D006944 5.0e-208 727.6 399 83.2
Cc07_g10420 Coffea canephora HOM05D005603 ORTHO05D006944 5.0e-208 727.6 391 87.7
Peaxi162Scf00083g01233 Petunia axillaris HOM05D005603 ORTHO05D006944 6.6e-208 727.2 395 87.1
AT3G51130 Arabidopsis thaliana HOM05D005603 ORTHO05D006944 8.6e-208 726.9 399 84.2
AL5G31550 Arabidopsis lyrata HOM05D005603 ORTHO05D006944 1.5e-207 726.1 399 83.5
CDE05G2538 Ceratophyllum demersum HOM05D005603 ORTHO05D006944 1.9e-207 725.7 402 84.8
EL10As8g23850 Beta vulgaris HOM05D005603 ORTHO05D006944 2.5e-207 725.3 396 85.6
Aa31LG4G19220 Aethionema arabicum HOM05D005603 ORTHO05D006944 4.3e-207 724.5 399 84.2
Migut.L00039 Erythranthe guttata HOM05D005603 ORTHO05D006944 5.6e-207 724.2 403 85.1
ECA246G4842 Erigeron canadensis HOM05D005603 ORTHO05D006944 9.5e-207 723.4 390 87.4
Thhalv10010418m.g Eutrema salsugineum HOM05D005603 ORTHO05D006944 9.5e-207 723.4 399 83.2
Nitab4.5_0000912g0020 Nicotiana tabacum HOM05D005603 ORTHO05D006944 1.2e-206 723.0 410 84.1
Oeu035330.1 Olea europaea HOM05D005603 ORTHO05D006944 1.2e-206 723.0 403 84.4
PGSC0003DMG400003547 Solanum tuberosum HOM05D005603 ORTHO05D006944 1.6e-206 722.6 389 87.1
Lsat_1_v5_gn_3_73720 Lactuca sativa HOM05D005603 ORTHO05D006944 4.7e-206 721.1 395 86.6
ATR0620G128 Amborella trichopoda HOM05D005603 ORTHO05D006944 5.2e-205 717.6 402 84.1
CSS0042462 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 2.0e-204 715.7 401 85.8
SalBow8G5567 Salvia bowleyana HOM05D005603 ORTHO05D006944 3.4e-204 714.9 414 83.1
Sp5g11080 Schrenkiella parvula HOM05D005603 ORTHO05D006944 1.3e-203 713.0 399 82.7
CSS0001882 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 1.7e-203 712.6 401 85.5
Haze_03808 Corylus avellana HOM05D005603 ORTHO05D006944 2.2e-203 712.2 400 85.8
BcaC06g33053 Brassica carinata HOM05D005603 ORTHO05D006944 2.9e-203 711.8 399 83.0
FAN28G0526 Fragaria x ananassa HOM05D005603 ORTHO05D006944 3.2e-202 708.4 402 84.8
CAN.G358.2 Capsicum annuum HOM05D005603 ORTHO05D006944 6.6e-200 700.7 391 83.9
Os06g0714000 Oryza sativa ssp. japonica HOM05D005603 ORTHO05D006944 1.9e-199 699.1 399 83.0
A03p48150 Brassica napus HOM05D005603 ORTHO05D006944 2.5e-199 698.7 383 83.6
BraA03t13922Z Brassica rapa HOM05D005603 ORTHO05D006944 2.5e-199 698.7 383 83.6
FAN23G1635 Fragaria x ananassa HOM05D005603 ORTHO05D006944 2.1e-198 695.7 396 84.1
Rhsim08G0035200 Rhododendron simsii HOM05D005603 ORTHO05D006944 3.6e-198 694.9 413 81.4
CARHR160730 Cardamine hirsuta HOM05D005603 ORTHO05D006944 6.2e-198 694.1 399 79.7
HPP92_025419 Vanilla planifolia HOM05D005603 ORTHO05D006944 1.1e-197 693.3 400 82.0
Cpa.g.sc6.214 Carica papaya HOM05D005603 ORTHO05D006944 1.4e-197 693.0 419 80.9
BolC7t45134H Brassica oleracea HOM05D005603 ORTHO05D006944 4.0e-197 691.4 385 83.1
FAN19G0288 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.2e-193 679.9 386 84.5
TWI53G1238 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 1.2e-193 679.9 364 88.2
C07p46180 Brassica napus HOM05D005603 ORTHO05D006944 2.3e-192 675.6 406 78.6
BraA09t39879Z Brassica rapa HOM05D005603 ORTHO05D006944 1.4e-189 666.4 384 79.9
FAN26G2705 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.4e-189 666.4 379 84.4
Sabra05G0096200 Salix brachista HOM05D005603 ORTHO05D006944 1.4e-189 666.4 405 80.5
A09p44190 Brassica napus HOM05D005603 ORTHO05D006944 3.1e-189 665.2 384 79.7
BolC8t50258H Brassica oleracea HOM05D005603 ORTHO05D006944 3.4e-188 661.8 384 79.4
MSTRG.3829 Avicennia marina HOM05D005603 ORTHO05D006944 1.3e-187 659.8 403 77.7
unitig_32.g11821 Utricularia gibba HOM05D005603 ORTHO05D006944 2.2e-187 659.1 385 81.6
Lj4C215G4 Lonicera japonica HOM05D005603 ORTHO05D006944 2.4e-186 655.6 402 78.6
BcaB01g00547 Brassica carinata HOM05D005603 ORTHO05D006944 3.5e-185 651.7 372 80.1
vmacro22086 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 7.8e-185 650.6 357 86.0
Duzib264G0505 Durio zibethinus HOM05D005603 ORTHO05D006944 3.9e-184 648.3 399 79.4
Sabra07G0013000 Salix brachista HOM05D005603 ORTHO05D006944 1.5e-183 646.4 401 79.3
Zm00001eb227930 Zea mays HOM05D005603 ORTHO05D006944 7.6e-180 634.0 399 76.9
vmacro18394 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 3.0e-176 622.1 341 85.9
C08p26410 Brassica napus HOM05D005603 ORTHO05D006944 1.5e-175 619.8 353 80.7
Lalb_Chr16g0377611 Lupinus albus HOM05D005603 ORTHO05D006944 3.1e-173 612.1 324 86.1
Ah.02g124640 Amaranthus hybridus HOM05D005603 ORTHO05D006944 1.7e-171 606.3 389 75.1
Pp3c2_6370 Physcomitrium patens HOM05D005603 ORTHO05D006944 1.1e-167 593.6 393 70.7
AagrBONN_evm.TU.Sc2ySwM_228.543 Anthoceros agrestis HOM05D005603 ORTHO05D006944 2.1e-166 589.3 398 70.9
SMO117G0153 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 1.2e-164 583.6 392 69.4
Pp3c10_8990 Physcomitrium patens HOM05D005603 ORTHO05D006944 4.9e-163 578.2 395 68.4
Dinv40059 Davidia involucrata HOM05D005603 ORTHO05D006944 3.5e-161 572.0 305 89.2
Dinv33602 Davidia involucrata HOM05D005603 ORTHO05D006944 1.6e-158 563.1 306 87.6
Actinidia31012 Actinidia chinensis HOM05D005603 ORTHO05D006944 4.6e-153 545.0 306 86.3
Mapoly0152s0028 Marchantia polymorpha HOM05D005603 ORTHO05D006944 4.8e-150 535.0 400 65.2
SEGI_22640 Sequoiadendron giganteum HOM05D005603 ORTHO05D006944 1.8e-149 533.1 345 74.5
Mapoly0094s0075 Marchantia polymorpha HOM05D005603 ORTHO05D006944 7.9e-145 517.7 393 63.6
Lalb_Chr09g0321921 Lupinus albus HOM05D005603 ORTHO05D006944 6.7e-120 434.9 242 86.0
SMO037G0002 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 3.6e-105 386.0 266 66.5
Solyc02g075630.3 Solanum lycopersicum HOM05D005603 ORTHO05D006944 3.5e-100 369.4 208 84.6
Atru.chr3.766 Acer truncatum HOM05D005603 ORTHO05D006944 1.7e-91 340.5 186 84.9
Actinidia26078 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.8e-88 330.5 218 77.1
Nn015s41468 Nelumbo nucifera HOM05D005603 ORTHO05D006944 1.3e-86 324.3 171 86.5
Migut.H02480 Erythranthe guttata HOM05D005603 ORTHO05D006944 1.7e-86 323.9 367 52.0
Lalb_Chr09g0321931 Lupinus albus HOM05D005603 ORTHO05D006944 6.0e-84 315.5 160 88.1
CBR_g36682 Chara braunii HOM05D005603 ORTHO05D000002 3.2e-77 293.1 224 62.5
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 3.2e-77 293.1 436 40.1
Nn015s41469 Nelumbo nucifera HOM05D005603 ORTHO05D006944 1.5e-71 274.2 146 85.6
BcaC06g33054 Brassica carinata HOM05D005603 ORTHO05D006944 3.2e-61 240.0 141 79.4
CBR_g36680 Chara braunii HOM05D005603 ORTHO05D006944 2.3e-59 233.8 172 64.5
Atru.chr2.40 Acer truncatum HOM05D005603 ORTHO05D006944 1.2e-44 184.9 190 53.7
Actinidia31013 Actinidia chinensis HOM05D005603 ORTHO05D006944 2.6e-31 140.6 72 87.5
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 1.3e-22 111.7 195 40.0
Cfa027245 Carpinus fangiana HOM05D005603 ORTHO05D006944 5.3e-16 89.7 274 27.7
COL.COLO4_32114 Corchorus olitorius HOM05D000931 ORTHO05D002226 1.5e-07 61.6 51 58.8


User provided reference genes

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