Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1423.7 700 100.0
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1376.7 700 96.7
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1373.2 700 96.1
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1343.6 700 93.6
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1340.1 700 93.7
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1228.0 698 84.7
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1224.9 698 84.5
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1224.2 698 84.5
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1216.4 698 83.8
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1213.4 698 83.4
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1206.0 697 82.5
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1204.5 697 83.6
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1203.7 701 83.0
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1203.3 698 81.9
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1201.8 698 82.4
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1198.7 699 82.3
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1196.8 698 81.9
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1194.9 698 82.4
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1194.5 698 82.2
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1191.4 677 84.3
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1190.6 701 82.2
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1190.3 697 82.6
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1188.7 698 81.5
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1188.3 698 82.5
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1187.6 695 81.9
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1184.5 698 81.1
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1184.1 699 82.0
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1183.7 699 80.7
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1182.9 697 81.9
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1182.5 698 81.8
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1182.2 701 82.0
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1181.8 698 80.1
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1181.8 699 82.0
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1181.0 698 82.2
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1181.0 698 81.8
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1178.3 700 81.0
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1177.5 698 81.7
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1177.2 698 81.9
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1176.4 698 82.2
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1176.0 695 81.0
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1175.6 700 80.4
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1173.7 697 79.8
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1173.7 698 81.8
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1173.3 698 80.1
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1172.1 698 81.5
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1170.6 698 80.8
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1160.6 695 80.1
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1159.1 698 80.4
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1158.3 697 79.9
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1158.3 695 80.1
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1158.3 698 80.1
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1158.3 699 79.5
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1155.2 700 80.1
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1152.9 699 78.0
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1152.5 723 77.6
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1152.5 700 80.0
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1152.1 701 80.6
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1151.7 700 79.1
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1151.0 700 79.9
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1149.8 700 78.4
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1149.4 700 78.7
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1147.5 700 78.7
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1147.5 701 78.0
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1146.7 697 79.1
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1146.0 699 78.0
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1145.6 700 77.6
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1144.8 698 78.7
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1140.2 699 77.3
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1139.8 700 78.7
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1136.7 698 77.4
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1135.2 697 79.8
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1134.8 698 77.2
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1134.4 698 78.8
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1134.0 699 76.4
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1131.7 699 78.0
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1130.2 701 76.9
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1127.5 701 76.6
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1125.9 698 78.5
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1119.4 697 75.9
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1115.9 696 78.2
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1111.3 722 75.8
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1104.4 685 78.8
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1104.0 751 73.0
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1102.8 697 77.0
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1099.0 723 73.0
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1094.7 685 78.2
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1093.2 698 76.9
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1092.0 698 75.6
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1089.3 744 73.7
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1088.9 698 75.9
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1087.4 719 74.7
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1084.7 650 80.0
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 4.8e-312 1074.3 699 74.8
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 6.8e-309 1063.5 615 82.3
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 4.1e-306 1054.3 698 75.2
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 5.4e-306 1053.9 699 74.2
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 7.8e-305 1050.0 698 75.1
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 1.5e-303 1045.8 680 73.7
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 7.8e-297 1023.5 704 72.3
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 8.7e-296 1020.0 699 71.0
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.1e-290 1003.0 585 81.4
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 7.1e-290 1000.3 707 70.2
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 5.5e-274 947.6 642 72.6
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 5.8e-268 927.5 544 82.4
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 1.2e-260 903.3 712 66.6
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 2.2e-259 899.0 585 73.7
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 4.8e-246 854.7 703 60.7
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 5.9e-236 821.2 543 74.0
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.9e-226 789.6 712 57.2
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 1.8e-224 783.1 702 55.8
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 3.0e-224 782.3 710 56.6
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 3.0e-224 782.3 710 56.6
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 5.4e-221 771.5 712 55.6
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 4.1e-213 745.3 717 55.2
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 7.0e-213 744.6 474 76.6
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 6.0e-188 661.8 386 81.6
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 1.8e-160 570.5 722 45.0
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 4.2e-149 532.7 381 69.0
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 5.1e-139 499.2 508 53.9
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 1.0e-110 405.2 250 77.2
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 1.8e-107 394.4 769 35.0
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 3.8e-102 376.7 817 33.9
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 1.5e-101 374.8 348 57.2
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 4.9e-97 359.8 268 65.7
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 2.8e-76 290.8 247 60.7
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 2.1e-71 274.6 179 73.2
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 1.0e-70 272.3 250 58.8
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 7.3e-69 266.2 184 72.8
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 4.7e-68 263.5 165 74.5
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 4.2e-64 250.4 607 31.3
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 1.2e-58 232.3 235 53.6
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 1.9e-48 198.4 128 72.7
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 2.1e-44 184.9 138 70.3
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 3.2e-40 171.0 108 77.8
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 2.2e-36 158.3 95 77.9
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 5.5e-32 143.7 75 89.3
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 6.1e-31 140.2 73 89.0
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 6.7e-30 136.7 231 39.4
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 2.2e-25 121.7 88 65.9
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 1.2e-18 99.4 87 56.3
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 1.3e-17 95.9 85 56.5
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 7.4e-13 80.1 48 81.2
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 6.3e-12 77.0 48 75.0


User provided reference genes

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