Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 1.6e-135 486.1 246 100.0
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 8.7e-110 400.6 224 91.5
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 5.7e-109 397.9 224 91.5
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 1.3e-105 386.7 235 86.4
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 3.9e-94 348.6 251 77.3
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 9.7e-93 344.0 230 80.4
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 2.6e-69 266.2 228 62.3
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 2.0e-66 256.5 237 60.8
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 5.9e-66 255.0 236 58.9
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 2.3e-65 253.1 236 59.3
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 5.0e-65 251.9 236 56.4
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 6.6e-65 251.5 233 55.8
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 1.1e-64 250.8 236 56.8
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 1.5e-64 250.4 236 57.6
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 5.6e-64 248.4 235 57.9
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 7.3e-64 248.1 234 56.8
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 1.6e-63 246.9 230 56.1
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 2.1e-63 246.5 224 57.6
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 3.6e-63 245.7 225 60.0
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 4.7e-63 245.4 233 54.9
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 8.0e-63 244.6 221 57.9
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 1.0e-62 244.2 261 53.3
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 1.8e-62 243.4 220 58.2
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 4.0e-62 242.3 230 57.0
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 4.0e-62 242.3 236 55.9
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 4.0e-62 242.3 225 60.0
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 8.9e-62 241.1 236 56.8
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 1.2e-61 240.7 221 57.5
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 1.5e-61 240.4 236 56.4
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 2.0e-61 240.0 229 56.3
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 5.7e-61 238.4 236 54.7
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 9.8e-61 237.7 236 54.7
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 1.3e-60 237.3 207 62.3
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 1.3e-60 237.3 235 54.0
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 6.4e-60 235.0 236 54.7
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 6.4e-60 235.0 236 55.1
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 8.3e-60 234.6 233 56.2
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 4.1e-59 232.3 237 56.1
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 1.2e-58 230.7 230 53.0
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 1.6e-58 230.3 287 48.8
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 2.7e-58 229.6 237 57.4
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 7.8e-58 228.0 232 54.7
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 1.1e-56 224.2 233 58.8
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 5.6e-56 221.9 230 53.0
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 7.3e-56 221.5 237 52.7
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.2e-55 220.7 225 52.4
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.2e-55 220.7 225 52.4
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 3.6e-55 219.2 225 52.0
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 4.7e-55 218.8 236 54.7
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 8.0e-55 218.0 224 54.9
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.4e-54 217.2 225 52.4
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 1.8e-54 216.9 226 51.8
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 2.3e-54 216.5 234 50.4
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 2.3e-54 216.5 197 56.9
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 3.1e-54 216.1 236 50.0
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 6.8e-54 214.9 233 57.1
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.2e-53 214.2 219 52.5
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.2e-53 214.2 219 52.5
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.5e-53 213.8 194 54.1
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 2.6e-53 213.0 239 50.6
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 3.4e-53 212.6 208 51.9
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 3.4e-53 212.6 206 53.9
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 4.4e-53 212.2 250 49.2
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 9.8e-53 211.1 168 71.4
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 2.2e-52 209.9 226 51.3
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 8.3e-52 208.0 234 51.3
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 1.1e-51 207.6 219 48.4
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.1e-51 207.6 176 58.0
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.9e-51 206.8 226 50.4
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 3.2e-51 206.1 193 56.5
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 1.0e-49 201.1 197 54.8
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.0e-49 201.1 196 54.1
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 1.0e-49 201.1 233 49.4
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 1.3e-49 200.7 205 60.5
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 1.7e-49 200.3 230 54.8
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 3.0e-49 199.5 197 53.8
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 3.0e-49 199.5 234 48.7
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 8.6e-49 198.0 197 53.3
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 1.1e-48 197.6 209 56.5
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 2.5e-48 196.4 232 49.1
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 3.3e-48 196.1 220 50.0
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 3.6e-47 192.6 227 48.0
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 6.2e-47 191.8 225 48.4
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 1.1e-46 191.0 226 47.3
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 2.3e-46 189.9 232 49.6
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 5.2e-46 188.7 213 48.4
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 8.9e-46 188.0 228 47.8
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 3.4e-45 186.0 215 47.0
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 4.4e-45 185.7 229 47.6
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 9.8e-45 184.5 230 48.3
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 2.9e-44 183.0 231 46.3
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 8.3e-44 181.4 238 45.8
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 8.3e-44 181.4 236 47.0
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-43 181.0 197 50.3
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 2.4e-43 179.9 197 49.7
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 1.6e-42 177.2 226 47.8
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 2.1e-42 176.8 201 49.3
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 2.7e-42 176.4 235 46.0
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 6.0e-42 175.3 235 47.2
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 7.8e-42 174.9 234 44.0
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 7.8e-42 174.9 242 48.8
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 1.0e-41 174.5 226 46.9
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 1.7e-41 173.7 229 47.6
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 2.3e-41 173.3 249 44.6
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 2.3e-41 173.3 231 45.0
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 5.1e-41 172.2 174 55.2
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-40 171.0 202 46.5
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-40 171.0 198 49.0
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 3.3e-40 169.5 228 46.9
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 2.1e-39 166.8 232 45.3
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 3.6e-39 166.0 232 45.7
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 4.7e-39 165.6 231 44.2
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 4.0e-38 162.5 229 43.2
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 6.8e-38 161.8 231 47.2
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 2.9e-36 156.4 242 42.6
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 2.9e-36 156.4 164 46.3
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 1.4e-35 154.1 172 51.7
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 3.2e-35 152.9 230 41.3
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 3.2e-35 152.9 186 52.7
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 3.2e-35 152.9 229 43.7
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 9.2e-35 151.4 174 47.7
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 1.2e-34 151.0 120 62.5
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 3.0e-33 146.4 239 41.4
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 1.5e-32 144.1 228 39.5
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 3.3e-32 142.9 237 40.1
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 9.6e-32 141.4 229 41.0
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 1.6e-31 140.6 226 41.2
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 1.4e-30 137.5 236 41.5
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 8.9e-30 134.8 202 42.6
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 1.6e-26 124.0 237 36.7
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 2.7e-26 123.2 197 36.0
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 1.7e-25 120.6 173 44.5
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 3.9e-25 119.4 204 37.7
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-24 117.9 195 40.0
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 2.5e-24 116.7 95 64.2
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 2.5e-24 116.7 102 54.9
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 4.5e-21 105.9 155 40.6
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 7.1e-19 98.6 142 42.3
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 1.1e-16 91.3 156 38.5
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 3.6e-15 86.3 149 38.3
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 4.8e-15 85.9 198 33.8
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 4.8e-15 85.9 145 40.0
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.5e-13 80.9 88 48.9
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 1.5e-13 80.9 159 33.3
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.5e-13 79.3 94 45.7
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 9.9e-13 78.2 88 47.7
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 3.2e-11 73.2 105 42.9
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 9.3e-11 71.6 94 42.6
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 4.6e-10 69.3 43 79.1
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 4.6e-10 69.3 43 79.1
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 1.0e-09 68.2 58 53.4
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 3.9e-09 66.2 61 55.7
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 5.1e-09 65.9 65 52.3
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 8.7e-09 65.1 65 52.3
arahy.Tifrunner.gnm1.ann1.E9WDF1 Arachis hypogaea HOM05D004487 ORTHO05D005483 6.2e-07 58.9 98 40.8


User provided reference genes

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