Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 0.0e+00 1197.6 647 100.0
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 1.1e-268 929.9 642 81.2
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 2.7e-259 898.7 642 79.6
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 1.3e-242 843.2 664 73.9
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 3.9e-133 479.6 647 50.5
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 5.1e-133 479.2 664 49.2
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 1.1e-132 478.0 646 48.8
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 1.5e-132 477.6 650 51.1
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 1.1e-130 471.5 599 52.8
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 6.9e-130 468.8 659 49.2
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 3.4e-129 466.5 646 48.0
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 1.7e-128 464.2 669 47.4
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 2.2e-128 463.8 670 46.7
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.1e-127 461.5 678 46.5
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 1.1e-127 461.5 678 46.5
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 1.1e-127 461.5 638 48.1
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 1.6e-126 457.6 631 48.8
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 1.0e-125 454.9 601 51.4
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.3e-125 454.5 647 48.1
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 1.3e-125 454.5 644 48.0
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 3.9e-125 453.0 649 47.5
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 2.5e-124 450.3 644 47.2
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 1.6e-123 447.6 638 47.2
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 1.6e-123 447.6 647 46.5
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 3.2e-119 433.3 638 48.6
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 1.2e-118 431.4 615 47.5
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 7.9e-118 428.7 652 45.7
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 3.3e-116 423.3 645 45.9
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 5.7e-116 422.5 656 45.4
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 9.6e-116 421.8 494 55.1
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 1.3e-115 421.4 672 44.2
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 1.3e-115 421.4 647 45.9
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 2.1e-115 420.6 639 45.2
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 4.8e-115 419.5 717 44.1
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 4.8e-115 419.5 676 43.2
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 6.2e-115 419.1 655 44.3
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 2.4e-114 417.2 596 46.3
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 1.5e-113 414.5 663 44.8
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 3.4e-113 413.3 650 47.1
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 1.7e-112 411.0 638 45.1
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 2.2e-112 410.6 650 43.1
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 6.5e-112 409.1 647 43.9
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 1.9e-111 407.5 654 43.1
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 9.3e-111 405.2 659 43.9
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 1.2e-110 404.8 623 46.7
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 2.7e-110 403.7 650 44.5
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 7.9e-110 402.1 652 43.9
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 1.3e-109 401.4 658 42.6
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 2.3e-109 400.6 649 44.2
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 3.9e-109 399.8 628 46.2
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 6.7e-109 399.1 656 43.1
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 2.5e-108 397.1 604 45.7
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 2.5e-108 397.1 639 43.8
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 1.3e-107 394.8 338 66.9
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 2.2e-107 394.0 656 44.2
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 4.8e-107 392.9 644 44.4
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.8e-106 391.0 632 44.1
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 2.4e-106 390.6 406 57.1
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 5.3e-106 389.4 657 43.4
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 9.0e-106 388.7 651 44.4
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 1.2e-105 388.3 661 42.2
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.2e-105 388.3 637 44.9
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 1.3e-104 384.8 621 45.2
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 1.7e-104 384.4 640 43.8
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 5.0e-104 382.9 628 45.4
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 1.4e-103 381.3 606 45.9
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 2.5e-103 380.6 637 44.6
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 3.2e-103 380.2 618 45.0
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 9.4e-103 378.6 636 43.1
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 9.4e-103 378.6 610 43.9
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 1.2e-102 378.3 593 46.2
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 1.2e-102 378.3 641 43.2
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 2.1e-102 377.5 628 43.6
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 1.5e-100 371.3 624 43.9
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 4.3e-100 369.8 590 45.6
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 5.7e-100 369.4 647 42.0
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 2.8e-99 367.1 700 40.6
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 3.7e-99 366.7 628 44.1
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 3.7e-99 366.7 740 38.1
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 1.4e-98 364.8 676 42.3
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 1.4e-98 364.8 342 62.6
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 5.3e-98 362.8 657 42.3
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 6.9e-98 362.5 641 42.1
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 3.4e-97 360.1 587 44.0
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 5.9e-97 359.4 384 59.9
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 2.9e-96 357.1 643 41.7
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 8.5e-96 355.5 600 43.8
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 8.5e-96 355.5 600 43.8
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 2.1e-94 350.9 649 41.0
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 6.1e-94 349.4 607 43.0
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 3.0e-93 347.1 638 40.8
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 6.7e-93 345.9 613 41.9
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 5.3e-90 336.3 605 41.5
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 1.7e-88 331.3 627 40.8
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 1.1e-84 318.5 604 40.2
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 1.3e-83 315.1 635 38.4
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 6.3e-83 312.8 615 40.7
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 1.7e-80 304.7 571 40.1
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 5.0e-80 303.1 360 51.9
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 8.5e-80 302.4 404 48.8
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 2.0e-76 291.2 531 43.5
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 4.1e-74 283.5 438 42.7
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 3.8e-72 276.9 513 40.0
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 3.4e-60 237.3 192 65.1
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 1.2e-57 228.8 345 45.2
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 4.4e-52 210.3 454 38.3
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 8.9e-45 186.0 435 38.4
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 4.1e-42 177.2 199 55.3
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 9.2e-42 176.0 321 39.6
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 6.6e-40 169.9 125 67.2
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 1.5e-39 168.7 325 34.5
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 1.2e-38 165.6 327 38.2
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 8.1e-38 162.9 430 35.1
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 3.1e-37 161.0 112 73.2
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 2.0e-36 158.3 258 42.6
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 3.4e-36 157.5 118 70.3
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 1.7e-35 155.2 114 69.3
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 8.4e-35 152.9 504 28.8
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 1.9e-34 151.8 594 29.1
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 2.7e-33 147.9 113 69.0
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 9.6e-31 139.4 572 28.1
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 1.2e-30 139.0 140 62.9
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 1.6e-30 138.7 349 35.2
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 8.9e-29 132.9 140 60.7
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 2.0e-28 131.7 140 60.0
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 1.1e-26 125.9 93 72.0
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 7.1e-26 123.2 112 55.4
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 1.2e-25 122.5 188 43.1
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 1.3e-22 112.5 105 55.2
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 1.8e-21 108.6 228 36.0
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 3.1e-21 107.8 106 54.7
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 1.5e-20 105.5 92 58.7
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 2.0e-20 105.1 81 70.4
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 2.6e-12 78.2 60 63.3
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 2.6e-12 78.2 371 27.2
COL.COLO4_35617 Corchorus olitorius HOM05D004921 ORTHO05D006008 2.4e-10 71.6 46 78.3
Actinidia16048 Actinidia chinensis HOM05D004921 ORTHO05D006008 1.3e-08 65.9 53 58.5
Cre08.g358950 Chlamydomonas reinhardtii HOM05D004921 ORTHO05D006008 4.3e-07 60.8 125 29.6
MBI14_g34262_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 1.6e-06 58.9 54 51.9
MBI14_g14180_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 4.8e-06 57.4 66 45.5


User provided reference genes

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