Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 2.6e-208 728.4 356 100.0
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 3.6e-173 611.7 358 85.5
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 8.3e-162 573.9 356 81.5
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 1.5e-134 483.4 359 71.3
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 4.5e-91 339.0 356 56.5
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 7.8e-67 258.5 377 44.3
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 1.0e-63 248.1 377 43.8
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 6.8e-63 245.4 375 41.6
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 7.5e-62 241.9 380 42.9
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 5.4e-60 235.7 365 43.8
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 1.0e-58 231.5 387 40.8
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 3.9e-58 229.6 387 39.3
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 1.5e-57 227.6 375 42.1
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 1.9e-57 227.3 402 38.3
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 8.9e-55 218.4 381 39.9
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 8.9e-55 218.4 383 40.5
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 1.2e-54 218.0 368 37.2
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 1.5e-54 217.6 363 43.3
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 1.5e-54 217.6 361 40.4
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 4.4e-54 216.1 371 41.8
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 5.8e-54 215.7 369 38.5
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 5.8e-54 215.7 374 38.5
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 2.9e-53 213.4 331 46.5
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 6.4e-53 212.2 398 39.2
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 1.1e-52 211.5 355 43.9
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 1.9e-52 210.7 361 39.9
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 2.4e-52 210.3 379 39.8
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 7.1e-52 208.8 375 38.4
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.2e-51 208.0 363 39.4
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.7e-50 204.1 358 39.1
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 2.3e-50 203.8 360 41.4
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 3.0e-50 203.4 358 39.7
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 3.0e-50 203.4 358 39.7
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 3.9e-50 203.0 358 39.1
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 5.1e-50 202.6 369 40.4
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.1e-49 201.4 369 40.1
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 1.1e-49 201.4 372 40.6
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.5e-49 201.1 369 39.6
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 2.5e-49 200.3 184 57.1
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 3.3e-49 199.9 362 39.5
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 8.1e-48 195.3 369 39.3
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 3.1e-47 193.4 358 38.8
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 3.4e-46 189.9 164 61.0
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 5.8e-46 189.1 362 37.8
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.3e-45 188.0 379 38.5
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 5.4e-44 182.6 365 38.4
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 5.4e-44 182.6 359 36.8
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 3.5e-43 179.9 359 36.8
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.7e-42 177.6 351 36.5
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 6.6e-42 175.6 214 48.1
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 1.5e-41 174.5 362 37.0
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.6e-40 171.0 330 38.2
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 2.8e-40 170.2 366 37.2
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 2.8e-40 170.2 353 37.1
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 8.1e-40 168.7 380 35.0
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 3.1e-39 166.8 350 37.1
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 5.2e-39 166.0 347 37.8
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 5.2e-39 166.0 164 56.1
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 5.2e-39 166.0 164 56.1
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 6.8e-39 165.6 364 34.6
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 1.3e-37 161.4 366 34.2
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 3.8e-37 159.8 361 36.6
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 3.8e-37 159.8 368 34.0
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 1.4e-36 157.9 366 34.2
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 1.4e-36 157.9 366 34.2
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 1.4e-36 157.9 366 34.2
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 1.4e-36 157.9 328 36.6
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 1.4e-36 157.9 198 44.4
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 2.4e-36 157.1 335 35.5
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 4.2e-36 156.4 359 35.7
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 9.3e-36 155.2 371 34.5
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.2e-35 154.8 367 32.4
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 2.1e-35 154.1 364 35.2
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 6.0e-35 152.5 358 36.9
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 1.3e-34 151.4 184 46.7
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 2.3e-34 150.6 175 49.7
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 2.3e-34 150.6 175 49.7
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 3.0e-34 150.2 355 34.9
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 3.9e-34 149.8 188 48.4
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 6.6e-34 149.1 175 49.1
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 6.6e-34 149.1 175 49.1
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 8.7e-34 148.7 196 44.9
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 8.7e-34 148.7 372 32.8
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 1.1e-33 148.3 348 35.3
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 1.5e-33 147.9 347 35.2
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 1.9e-33 147.5 368 31.8
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 2.5e-33 147.1 361 35.2
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 4.3e-33 146.4 346 33.2
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 7.3e-33 145.6 392 31.9
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 9.6e-33 145.2 355 34.4
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 1.3e-32 144.8 355 32.7
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 1.6e-32 144.4 355 32.7
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 2.1e-32 144.1 375 32.0
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 3.6e-32 143.3 365 33.2
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 3.6e-32 143.3 355 32.4
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 6.2e-32 142.5 155 51.0
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 6.2e-32 142.5 341 34.6
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 1.1e-31 141.7 214 40.7
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 1.1e-31 141.7 186 44.6
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 1.1e-31 141.7 375 31.7
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 1.8e-31 141.0 358 33.0
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 5.3e-31 139.4 164 47.0
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 6.9e-31 139.0 345 35.7
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 9.0e-31 138.7 145 54.5
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 2.0e-30 137.5 351 32.8
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 3.4e-30 136.7 216 40.7
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 3.4e-30 136.7 258 34.5
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 5.8e-30 136.0 357 31.7
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 7.6e-30 135.6 353 34.3
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 1.7e-29 134.4 367 32.7
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 3.8e-29 133.3 163 42.9
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 4.2e-28 129.8 206 41.7
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 4.2e-28 129.8 181 42.5
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 5.4e-28 129.4 160 45.6
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 7.1e-28 129.0 158 50.6
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 2.7e-27 127.1 329 34.3
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 2.7e-27 127.1 186 43.0
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 8.7e-26 122.1 339 33.9
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 3.3e-25 120.2 337 33.8
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 3.6e-24 116.7 348 33.0
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 1.4e-23 114.8 162 45.1
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.4e-23 114.0 272 32.4
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 2.2e-21 107.5 189 38.1
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 4.2e-20 103.2 149 39.6
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 4.6e-19 99.8 177 36.7
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 5.1e-18 96.3 118 45.8
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.1e-17 95.1 184 37.5
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 4.3e-17 93.2 186 36.0
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 9.0e-15 85.5 180 34.4
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 1.7e-13 81.3 88 50.0
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 2.9e-13 80.5 272 27.9
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 2.1e-11 74.3 90 43.3
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 6.0e-11 72.8 151 35.1
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 1.3e-10 71.6 114 36.8
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 3.0e-10 70.5 102 40.2
Hund16271 Selenicereus undatus HOM05D005306 ORTHO05D006158 3.9e-10 70.1 360 26.9
Lj2C552G1 Lonicera japonica HOM05D005306 ORTHO05D006158 6.3e-08 62.8 181 27.6
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 8.2e-08 62.4 136 29.4
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 1.4e-07 61.6 117 34.2
THA.LOC104816509 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 6.9e-07 59.3 173 29.5
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 1.0e-05 55.5 109 34.9


User provided reference genes

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