Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G018790 Citrullus lanatus HOM05D003474 ORTHO05D003971 3.9e-119 431.4 206 100.0
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 2.7e-43 179.5 212 53.8
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 1.3e-42 177.2 212 50.5
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 3.6e-40 169.1 212 49.1
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 3.5e-35 152.5 198 46.0
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 6.5e-34 148.3 205 42.9
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 3.3e-33 146.0 205 43.4
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 2.8e-32 142.9 201 44.8
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 3.0e-31 139.4 201 45.8
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 6.8e-31 138.3 201 44.3
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 6.8e-31 138.3 201 44.3
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 1.5e-30 137.1 204 44.1
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 2.0e-30 136.7 205 41.5
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 2.6e-30 136.3 201 43.8
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 2.6e-30 136.3 201 43.8
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 3.4e-30 136.0 201 43.8
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 1.3e-29 134.0 199 42.2
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 2.8e-29 132.9 205 43.4
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 6.3e-29 131.7 203 40.9
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 8.3e-29 131.3 209 40.7
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 8.3e-29 131.3 207 41.1
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 7.0e-28 128.3 212 42.5
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 1.6e-27 127.1 205 40.5
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 4.5e-27 125.6 205 39.0
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 5.9e-27 125.2 211 42.2
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 7.8e-27 124.8 217 40.6
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.0e-26 124.4 216 40.7
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 1.7e-26 123.6 199 38.7
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 2.3e-26 123.2 211 41.2
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 6.6e-26 121.7 210 41.4
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 6.6e-26 121.7 209 39.2
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 8.6e-26 121.3 207 42.5
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.1e-25 120.9 217 40.6
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 1.1e-25 120.9 168 48.2
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 1.1e-25 120.9 215 36.7
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 1.5e-25 120.6 207 38.2
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 1.9e-25 120.2 202 41.1
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 3.3e-25 119.4 199 40.7
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 3.3e-25 119.4 199 40.7
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 4.3e-25 119.0 199 40.2
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.2e-24 117.5 199 40.2
CANSAT73G0001 Cannabis sativa HOM05D003474 ORTHO05D003971 1.6e-24 117.1 215 39.1
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.8e-24 116.3 202 40.6
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 3.6e-24 115.9 217 39.2
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 3.6e-24 115.9 209 40.7
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 4.7e-24 115.5 204 40.2
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 6.1e-24 115.2 208 38.9
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 6.1e-24 115.2 209 39.2
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 6.1e-24 115.2 209 39.2
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 1.0e-23 114.4 208 41.3
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 2.3e-23 113.2 198 39.9
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 4.0e-23 112.5 220 37.7
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 6.8e-23 111.7 202 39.6
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 1.2e-22 110.9 198 37.9
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 2.0e-22 110.2 208 38.0
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 2.6e-22 109.8 202 38.1
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 3.4e-22 109.4 206 40.3
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 3.4e-22 109.4 208 35.6
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 4.4e-22 109.0 202 36.6
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 5.8e-22 108.6 204 36.8
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 7.5e-22 108.2 187 39.0
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 1.3e-21 107.5 208 38.5
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 1.7e-21 107.1 204 36.3
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 2.2e-21 106.7 203 39.4
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 3.7e-21 105.9 202 35.6
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 4.9e-21 105.5 202 35.6
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 6.4e-21 105.1 204 34.3
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 8.3e-21 104.8 203 39.4
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 8.3e-21 104.8 113 49.6
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.4e-20 104.0 206 35.4
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 1.4e-20 104.0 199 38.7
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 1.8e-20 103.6 204 34.8
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 4.1e-20 102.4 204 32.8
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 4.1e-20 102.4 204 32.8
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 7.0e-20 101.7 204 33.3
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 1.2e-19 100.9 201 36.8
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 1.2e-19 100.9 195 36.4
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.2e-19 100.9 204 35.8
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 1.6e-19 100.5 204 36.8
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 2.0e-19 100.1 204 35.8
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 2.0e-19 100.1 205 36.1
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 2.7e-19 99.8 162 42.6
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 3.5e-19 99.4 205 35.6
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 3.5e-19 99.4 205 33.7
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 3.5e-19 99.4 204 35.3
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 3.5e-19 99.4 198 34.8
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 4.6e-19 99.0 206 36.9
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 4.6e-19 99.0 198 30.8
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 6.0e-19 98.6 205 33.2
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 6.0e-19 98.6 205 38.0
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 7.8e-19 98.2 228 33.3
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 7.8e-19 98.2 232 34.1
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 7.8e-19 98.2 232 34.1
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 7.8e-19 98.2 203 33.0
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 1.0e-18 97.8 211 35.1
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 1.3e-18 97.4 203 35.0
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 1.3e-18 97.4 206 34.0
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 1.3e-18 97.4 213 35.7
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 1.3e-18 97.4 202 33.7
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 1.7e-18 97.1 195 37.4
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 1.7e-18 97.1 212 36.8
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 2.3e-18 96.7 206 34.0
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 3.0e-18 96.3 205 33.2
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 3.0e-18 96.3 205 33.2
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 3.0e-18 96.3 205 33.2
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 5.0e-18 95.5 204 34.3
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 6.6e-18 95.1 195 39.0
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 1.1e-17 94.4 204 34.3
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 1.5e-17 94.0 212 32.5
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 1.5e-17 94.0 206 34.0
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 1.5e-17 94.0 206 34.0
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 1.5e-17 94.0 202 34.2
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 1.5e-17 94.0 202 33.7
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 1.5e-17 94.0 207 35.3
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 1.9e-17 93.6 184 41.3
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 1.9e-17 93.6 208 36.5
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 2.5e-17 93.2 184 32.1
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 3.3e-17 92.8 204 32.8
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 4.3e-17 92.4 150 42.7
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 4.3e-17 92.4 204 31.4
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 4.3e-17 92.4 206 33.5
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 5.6e-17 92.0 202 32.2
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 5.6e-17 92.0 207 33.8
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 5.6e-17 92.0 211 33.2
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 7.3e-17 91.7 202 33.7
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 1.6e-16 90.5 202 35.1
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 1.6e-16 90.5 208 34.1
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 2.8e-16 89.7 199 33.2
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 2.8e-16 89.7 204 33.3
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 2.8e-16 89.7 208 31.7
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 2.8e-16 89.7 208 31.7
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 3.6e-16 89.4 204 33.3
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 3.6e-16 89.4 195 34.9
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 4.7e-16 89.0 198 33.8
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 4.7e-16 89.0 212 31.6
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 8.0e-16 88.2 212 32.1
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 1.4e-15 87.4 202 31.2
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 1.4e-15 87.4 213 32.9
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 1.8e-15 87.0 208 30.8
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 2.3e-15 86.7 205 32.2
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 4.0e-15 85.9 212 32.1
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 4.0e-15 85.9 209 33.5
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 8.9e-15 84.7 208 34.1
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 8.9e-15 84.7 205 34.1
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.2e-14 84.3 133 38.3
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 2.0e-14 83.6 206 33.0
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 2.0e-14 83.6 202 29.2
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 4.4e-14 82.4 173 37.6
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 9.8e-14 81.3 157 33.1
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 9.8e-14 81.3 210 35.2
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 1.3e-13 80.9 202 31.7
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 1.7e-13 80.5 196 33.2
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 3.7e-13 79.3 218 31.7
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 3.7e-13 79.3 198 33.8
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 1.5e-09 67.4 93 46.2
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 3.6e-08 62.8 115 37.4
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 4.7e-08 62.4 142 35.2
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 6.2e-08 62.0 136 33.8
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 4.0e-07 59.3 136 33.1
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 1.2e-06 57.8 129 34.1
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 2.0e-06 57.0 136 32.4
PGSC0003DMG400001892 Solanum tuberosum HOM05D003474 ORTHO05D003971 3.4e-06 56.2 126 33.3
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 4.4e-06 55.8 93 37.6


User provided reference genes

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