Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 1.7e-219 765.8 393 100.0
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.6e-132 476.1 393 68.4
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 1.6e-129 466.8 397 68.3
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 6.5e-91 338.6 362 57.7
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 2.2e-86 323.6 394 51.0
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 3.4e-55 219.9 402 41.0
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 4.6e-52 209.5 346 41.0
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 6.0e-52 209.1 382 40.8
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 3.0e-51 206.8 351 42.2
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 3.0e-51 206.8 353 41.1
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 5.6e-50 202.6 395 40.5
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 9.5e-50 201.8 307 44.6
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 9.5e-50 201.8 307 44.6
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 6.2e-49 199.1 374 40.1
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.1e-48 198.4 396 40.4
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 2.3e-48 197.2 369 40.1
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 6.8e-48 195.7 368 39.7
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 2.6e-47 193.7 304 43.4
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 5.8e-47 192.6 376 40.2
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 7.5e-47 192.2 304 43.1
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 1.3e-46 191.4 382 39.8
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 1.7e-46 191.0 389 40.4
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 1.1e-45 188.3 371 40.7
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 1.4e-45 188.0 338 40.8
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 3.2e-45 186.8 344 39.5
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 4.1e-45 186.4 345 40.6
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 5.4e-45 186.0 372 40.6
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 7.1e-45 185.7 307 43.6
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 9.2e-45 185.3 311 42.1
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 3.5e-44 183.3 373 40.5
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 3.5e-44 183.3 376 38.8
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 6.0e-44 182.6 374 38.5
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 7.8e-44 182.2 349 40.1
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 1.7e-43 181.0 397 38.3
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 3.9e-43 179.9 325 41.2
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 5.1e-43 179.5 320 40.6
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 5.1e-43 179.5 340 40.0
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 8.6e-43 178.7 373 40.5
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 2.5e-42 177.2 294 42.9
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 3.3e-42 176.8 353 36.0
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 3.3e-42 176.8 374 37.7
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 4.3e-42 176.4 336 39.3
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 4.3e-42 176.4 404 38.6
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 5.6e-42 176.0 362 37.8
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 1.2e-41 174.9 329 38.9
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 1.6e-41 174.5 365 38.6
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 3.6e-41 173.3 345 38.8
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.4e-40 171.4 351 38.5
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 1.8e-40 171.0 312 40.1
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 8.9e-40 168.7 354 39.0
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 1.2e-39 168.3 312 39.4
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.2e-39 168.3 330 39.7
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 1.5e-39 167.9 252 46.0
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 9.9e-39 165.2 333 40.8
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 1.7e-38 164.5 361 37.1
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 2.9e-38 163.7 308 39.9
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 3.8e-38 163.3 297 39.1
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 6.4e-38 162.5 346 38.4
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 1.4e-37 161.4 279 42.7
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 2.4e-37 160.6 223 48.4
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 2.4e-37 160.6 230 48.3
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 3.2e-37 160.2 294 38.8
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 5.4e-37 159.5 275 40.4
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 1.2e-36 158.3 384 37.0
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 1.2e-36 158.3 376 34.6
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 3.5e-36 156.8 294 38.8
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 4.6e-36 156.4 299 41.1
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 6.0e-36 156.0 372 34.1
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 6.0e-36 156.0 395 35.2
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 1.7e-35 154.5 359 35.4
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 1.7e-35 154.5 308 37.3
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 2.3e-35 154.1 370 36.2
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 2.3e-35 154.1 267 41.6
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 3.9e-35 153.3 284 39.8
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 3.9e-35 153.3 379 36.4
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 6.6e-35 152.5 382 34.3
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 3.3e-34 150.2 352 37.2
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 5.6e-34 149.4 314 38.2
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 5.6e-34 149.4 400 33.5
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 1.6e-33 147.9 275 38.9
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 3.6e-33 146.7 315 37.5
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 6.2e-33 146.0 366 34.2
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 8.1e-33 145.6 366 34.2
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 1.1e-32 145.2 384 34.4
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 1.1e-32 145.2 367 35.7
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 1.1e-32 145.2 273 40.7
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 1.4e-32 144.8 370 35.1
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 1.4e-32 144.8 363 34.4
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 1.4e-32 144.8 370 35.1
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 1.4e-32 144.8 330 38.2
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.8e-32 144.4 281 39.5
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 3.1e-32 143.7 363 34.2
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 3.1e-32 143.7 348 35.6
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 5.2e-32 142.9 306 36.9
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 5.2e-32 142.9 274 39.4
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 9.0e-32 142.1 395 33.2
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 9.0e-32 142.1 352 34.7
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 1.5e-31 141.4 274 39.1
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 2.6e-31 140.6 282 37.6
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 3.4e-31 140.2 274 37.6
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 3.4e-31 140.2 274 37.6
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 3.4e-31 140.2 288 38.9
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 4.4e-31 139.8 356 35.4
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 9.9e-31 138.7 278 37.8
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 2.2e-30 137.5 352 34.7
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 8.4e-30 135.6 377 34.2
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.1e-29 135.2 366 34.2
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 2.4e-29 134.0 236 41.5
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 4.2e-29 133.3 250 38.4
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 4.2e-29 133.3 368 35.6
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 3.5e-28 130.2 387 32.8
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 4.6e-28 129.8 445 30.8
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 1.1e-26 125.2 409 32.3
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 7.3e-26 122.5 201 41.3
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 6.2e-25 119.4 296 33.1
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 8.1e-25 119.0 230 41.7
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 2.4e-24 117.5 194 43.3
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 1.5e-23 114.8 317 33.8
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 7.6e-23 112.5 270 36.3
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.7e-22 111.3 220 38.2
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 1.7e-22 111.3 290 33.1
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 4.9e-22 109.8 200 40.5
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 1.1e-21 108.6 279 33.0
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 1.4e-21 108.2 226 38.1
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 2.4e-21 107.5 239 38.1
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 5.4e-21 106.3 191 39.8
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 7.1e-21 105.9 204 39.2
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 1.6e-20 104.8 233 36.1
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 4.6e-20 103.2 272 31.2
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 7.9e-20 102.4 201 38.8
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 2.3e-19 100.9 249 33.3
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.8e-16 91.3 62 79.0
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 2.0e-15 87.8 61 78.7
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 8.4e-14 82.4 78 60.3
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 7.1e-13 79.3 169 36.7
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 9.3e-13 79.0 94 51.1
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 9.3e-13 79.0 94 51.1
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 8.7e-11 72.4 46 82.6
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.9e-10 71.2 113 48.7
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 4.3e-10 70.1 109 44.0
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 5.6e-10 69.7 188 31.4
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 3.4e-07 60.5 200 29.0
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 4.5e-07 60.1 239 27.6
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 2.2e-06 57.8 91 39.6
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 8.4e-06 55.8 38 81.6


User provided reference genes

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