Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G018420 Citrullus lanatus HOM05D006387 ORTHO05D008533 5.6e-130 467.6 235 100.0
CsaV3_6G045090 Cucumis sativus L. HOM05D006387 ORTHO05D008533 1.6e-121 439.5 249 90.0
MELO3C007722.2 Cucumis melo HOM05D006387 ORTHO05D008533 3.6e-121 438.3 249 90.8
QL06p047416 Quercus lobata HOM05D006387 ORTHO05D008533 3.1e-96 355.5 245 73.9
QL93p1865_0022 Quercus lobata HOM05D006387 ORTHO05D008533 3.1e-96 355.5 245 73.9
Sed0018819 Sechium edule HOM05D006387 ORTHO05D008533 2.0e-95 352.8 253 77.1
Cfa004350 Carpinus fangiana HOM05D006387 ORTHO05D008533 5.8e-95 351.3 250 73.6
Thecc.01G091900 Theobroma cacao HOM05D006387 ORTHO05D008533 5.8e-95 351.3 251 72.9
Manes.12G127300 Manihot esculenta HOM05D006387 ORTHO05D008533 2.9e-94 349.0 249 73.1
Gorai.007G233200 Gossypium raimondii HOM05D006387 ORTHO05D008533 6.4e-94 347.8 251 72.1
CiPaw.01G046800 Carya illinoinensis HOM05D006387 ORTHO05D008533 1.0e-91 340.5 250 70.0
RcHm_v2.0_Chr2g0111431 Rosa chinensis HOM05D006387 ORTHO05D008533 1.5e-90 336.7 252 70.2
Dinv13619 Davidia involucrata HOM05D006387 ORTHO05D008533 5.6e-90 334.7 231 75.3
Ciclev10026362m.g Citrus clementina HOM05D006387 ORTHO05D008533 9.6e-90 334.0 249 69.1
Gohir.D11G217100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 1.3e-89 333.6 251 70.5
Gohir.A11G206500 Gossypium hirsutum HOM05D006387 ORTHO05D008533 2.8e-89 332.4 251 70.5
Prupe.6G197200 Prunus persica HOM05D006387 ORTHO05D008533 1.1e-88 330.5 213 78.4
Cpa.g.sc55.48 Carica papaya HOM05D006387 ORTHO05D008533 3.1e-88 328.9 207 78.3
Ca_22597_v3 Cicer arietinum L. HOM05D006387 ORTHO05D008533 3.1e-88 328.9 249 69.5
TWI53G0307 Tripterygium wilfordii HOM05D006387 ORTHO05D008533 4.0e-88 328.6 243 70.4
Haze_15057 Corylus avellana HOM05D000344 ORTHO05D000934 6.9e-88 327.8 243 71.2
Glyma.18G146100 Glycine max HOM05D006387 ORTHO05D008533 1.2e-87 327.0 249 69.1
Atru.chr3.1288 Acer truncatum HOM05D006387 ORTHO05D008533 2.6e-87 325.9 243 70.0
Peaxi162Scf00447g00119 Petunia axillaris HOM05D006387 ORTHO05D008533 8.4e-86 320.9 213 73.2
MD15G1314800 Malus domestica HOM05D006387 ORTHO05D008533 1.9e-85 319.7 198 80.3
Medtr8g068855 Medicago truncatula HOM05D006387 ORTHO05D008533 2.4e-85 319.3 201 78.6
arahy.Tifrunner.gnm1.ann1.ZYRR1K Arachis hypogaea HOM05D006387 ORTHO05D008533 7.1e-85 317.8 208 75.5
Lj4g0015074 Lotus japonicus HOM05D006387 ORTHO05D008533 9.3e-85 317.4 224 71.9
arahy.Tifrunner.gnm1.ann1.K640S8 Arachis hypogaea HOM05D006387 ORTHO05D008533 1.2e-84 317.0 205 76.1
Lalb_Chr05g0228491 Lupinus albus HOM05D006387 ORTHO05D008533 1.2e-84 317.0 214 72.9
TPR.G14610 Trifolium pratense HOM05D006387 ORTHO05D008533 1.6e-84 316.6 207 75.8
Psat4g119200 Pisum sativum HOM05D006387 ORTHO05D008533 2.1e-84 316.2 245 66.9
Nitab4.5_0010196g0030 Nicotiana tabacum HOM05D006387 ORTHO05D008533 2.7e-84 315.8 221 71.0
MSTRG.15694 Avicennia marina HOM05D006387 ORTHO05D008533 7.9e-84 314.3 218 70.2
THA.LOC104804173 Tarenaya hassleriana HOM05D006387 ORTHO05D008533 1.0e-83 313.9 201 76.6
Solyc11g010510.2 Solanum lycopersicum HOM05D006387 ORTHO05D008533 2.3e-83 312.8 215 71.6
FAN26G1841 Fragaria x ananassa HOM05D006387 ORTHO05D008533 3.0e-83 312.4 239 68.6
PGSC0003DMG400016205 Solanum tuberosum HOM05D006387 ORTHO05D008533 3.0e-83 312.4 212 72.2
SalBow5G0849 Salvia bowleyana HOM05D006387 ORTHO05D008533 5.1e-83 311.6 205 72.7
FvH4_1g19820 Fragaria vesca HOM05D006387 ORTHO05D008533 1.5e-82 310.1 201 77.1
PGR102G1540 Punica granatum HOM05D006387 ORTHO05D008533 1.5e-82 310.1 229 69.0
Nitab4.5_0001468g0050 Nicotiana tabacum HOM05D006387 ORTHO05D008533 1.9e-82 309.7 201 73.6
Lj4A270T42 Lonicera japonica HOM05D006387 ORTHO05D008533 2.5e-82 309.3 199 74.9
Migut.K00786 Erythranthe guttata HOM05D006387 ORTHO05D008533 3.3e-82 308.9 198 74.7
vmacro18567 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 3.3e-82 308.9 199 75.9
Sopen11g005290 Solanum pennellii HOM05D006387 ORTHO05D008533 5.6e-82 308.1 215 70.7
CAN.G1388.12 Capsicum annuum HOM05D006387 ORTHO05D008533 7.4e-82 307.8 238 63.9
Lju188A1T76 Lonicera japonica HOM05D006387 ORTHO05D008533 7.4e-82 307.8 199 74.4
Sc16g0000480 Simmondsia chinensis HOM05D006387 ORTHO05D008533 2.8e-81 305.8 253 62.8
Cc07_g14250 Coffea canephora HOM05D006387 ORTHO05D008533 4.8e-81 305.1 212 70.8
Rhsim08G0015000 Rhododendron simsii HOM05D006387 ORTHO05D008533 6.2e-81 304.7 197 76.1
Aa31LG6G15050 Aethionema arabicum HOM05D006387 ORTHO05D008533 8.1e-81 304.3 227 69.2
MBI06_g39563_MAGBIO Magnolia biondii HOM05D006387 ORTHO05D008533 8.1e-81 304.3 204 74.0
Duzib187G0618 Durio zibethinus HOM05D006387 ORTHO05D008533 1.1e-80 303.9 208 72.1
Thhalv10026114m.g Eutrema salsugineum HOM05D006387 ORTHO05D008533 1.4e-80 303.5 213 71.8
SGA_v2.0_scaffold52G19002 Striga asiatica HOM05D006387 ORTHO05D008533 1.4e-80 303.5 208 71.6
Sabra07G0007900 Salix brachista HOM05D006387 ORTHO05D008533 3.1e-80 302.4 252 63.1
Eucgr.H04725 Eucalyptus grandis HOM05D006387 ORTHO05D008533 4.0e-80 302.0 196 75.5
Potri.007G010400 Populus trichocarpa HOM05D006387 ORTHO05D008533 1.2e-79 300.4 255 62.4
A04p09020 Brassica napus HOM05D006387 ORTHO05D008533 1.5e-79 300.1 211 71.6
BraA04t16597Z Brassica rapa HOM05D006387 ORTHO05D008533 1.5e-79 300.1 211 71.6
FAN19G3199 Fragaria x ananassa HOM05D006387 ORTHO05D008533 1.5e-79 300.1 197 76.6
Phvul.003G289400 Phaseolus vulgaris HOM05D006387 ORTHO05D008533 3.4e-79 298.9 226 67.3
unitig_748.g8645 Utricularia gibba HOM05D006387 ORTHO05D008533 3.4e-79 298.9 210 70.5
Carub.0007s0212 Capsella rubella HOM05D006387 ORTHO05D008533 1.0e-78 297.4 206 73.3
BcaC02g09451 Brassica carinata HOM05D006387 ORTHO05D008533 1.7e-78 296.6 211 70.6
BcaNung03133 Brassica carinata HOM05D006387 ORTHO05D008533 1.7e-78 296.6 236 63.6
C04p42900 Brassica napus HOM05D006387 ORTHO05D008533 2.2e-78 296.2 211 70.6
BolC4t25859H Brassica oleracea HOM05D006387 ORTHO05D008533 2.9e-78 295.8 211 70.6
GSVIVG01006732001 Vitis vinifera HOM05D006387 ORTHO05D008533 3.8e-78 295.4 209 68.9
HanXRQChr14g0442661 Helianthus annuus HOM05D006387 ORTHO05D008533 4.9e-78 295.0 210 68.6
Sp7g10120 Schrenkiella parvula HOM05D006387 ORTHO05D008533 4.9e-78 295.0 211 70.6
GSVIVG01003594001 Vitis vinifera HOM05D006387 ORTHO05D008533 4.9e-78 295.0 209 68.9
AUR62017959 Chenopodium quinoa HOM05D006387 ORTHO05D008533 6.5e-78 294.7 219 67.1
Nn5g29908 Nelumbo nucifera HOM05D006387 ORTHO05D008533 8.4e-78 294.3 231 65.4
ECA238G0943 Erigeron canadensis HOM05D006387 ORTHO05D008533 2.5e-77 292.7 215 68.8
AUR62003651 Chenopodium quinoa HOM05D006387 ORTHO05D008533 3.2e-77 292.4 251 61.8
Hund16539 Selenicereus undatus HOM05D006387 ORTHO05D008533 7.1e-77 291.2 224 67.0
PSO541G2357 Papaver somniferum HOM05D006387 ORTHO05D008533 1.6e-76 290.0 236 64.0
EL10Ac6g15218 Beta vulgaris HOM05D006387 ORTHO05D008533 2.1e-76 289.7 237 62.0
AL7G12534 Arabidopsis lyrata HOM05D006387 ORTHO05D008533 4.6e-76 288.5 208 69.2
Aqoxy6G01447 Aquilegia oxysepala HOM05D006387 ORTHO05D008533 3.9e-75 285.4 198 69.7
Actinidia26608 Actinidia chinensis HOM05D006387 ORTHO05D008533 6.3e-73 278.1 204 70.1
CANSAT01G3264 Cannabis sativa HOM05D006387 ORTHO05D008533 2.4e-72 276.2 211 67.8
CDE08G1301 Ceratophyllum demersum HOM05D006387 ORTHO05D008533 5.3e-72 275.0 195 68.2
Lsat_1_v5_gn_2_70881 Lactuca sativa HOM05D006387 ORTHO05D008533 9.0e-72 274.2 198 69.2
FAN28G2490 Fragaria x ananassa HOM05D006387 ORTHO05D008533 7.6e-71 271.2 210 68.6
Zm00001eb038350 Zea mays HOM05D006387 ORTHO05D008533 2.3e-67 259.6 194 64.4
ATR0022G066 Amborella trichopoda HOM05D006387 ORTHO05D008533 3.3e-66 255.8 201 63.7
Os08g0478100 Oryza sativa ssp. japonica HOM05D006387 ORTHO05D008533 3.3e-66 255.8 243 56.0
SEGI_33925 Sequoiadendron giganteum HOM05D006387 ORTHO05D008533 2.3e-59 233.0 191 60.2
vmacro09229 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 1.1e-53 214.2 147 72.8
Gorai.007G059200 Gossypium raimondii HOM05D006387 ORTHO05D008533 1.9e-53 213.4 231 53.7
Glyma.08G280000 Glycine max HOM05D006387 ORTHO05D008533 5.1e-51 205.3 179 62.0
Gohir.D11G054100 Gossypium hirsutum HOM05D006387 ORTHO05D008533 3.3e-50 202.6 228 53.1
CSS0019105 Camellia sinensis var. sinensis HOM05D006387 ORTHO05D008533 4.1e-48 195.7 133 74.4
AT4G38090 Arabidopsis thaliana HOM05D006387 ORTHO05D008533 3.6e-44 182.6 136 66.9
vmacro14991 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 4.7e-44 182.2 159 59.7
Pp3c7_18820 Physcomitrium patens HOM05D006387 ORTHO05D008533 8.8e-43 177.9 179 51.4
AagrBONN_evm.TU.Sc2ySwM_344.3556 Anthoceros agrestis HOM05D006387 ORTHO05D008533 1.8e-40 170.2 155 53.5
TPR.G1343 Trifolium pratense HOM05D000744 ORTHO05D000332 1.3e-38 164.1 97 81.4
Gohir.A11G050750 Gossypium hirsutum HOM05D006387 ORTHO05D008533 1.7e-38 163.7 237 43.9
vmacro10806 Vaccinium macrocarpon HOM05D006387 ORTHO05D008533 2.5e-37 159.8 112 73.2
Cre10.g448800 Chlamydomonas reinhardtii HOM05D006387 ORTHO05D008533 5.2e-35 152.1 195 42.1
SMO361G0736 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 2.0e-34 150.2 131 59.5
HPP92_016734 Vanilla planifolia HOM05D006387 ORTHO05D008533 4.8e-33 145.6 116 62.9
VMungo0251G0198 Vigna mungo HOM05D006387 ORTHO05D008533 4.1e-32 142.5 146 56.2
FAN23G2995 Fragaria x ananassa HOM05D006387 ORTHO05D008533 7.2e-29 131.7 135 57.0
COL.COLO4_27345 Corchorus olitorius HOM05D000344 ORTHO05D000934 1.5e-26 124.0 88 70.5
MCO03G602 Micromonas commoda HOM05D006387 ORTHO05D008533 3.1e-24 116.3 211 34.6
PRCOL_00004912 Prasinoderma coloniale HOM05D006387 ORTHO05D008533 1.2e-23 114.4 210 34.3
SMO361G0739 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 1.2e-23 114.4 98 60.2
CARHR246490 Cardamine hirsuta HOM05D006387 ORTHO05D008533 1.7e-22 110.5 100 57.0
SMO361G0500 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 8.6e-22 108.2 136 41.9
RcHm_v2.0_Chr2g0111411 Rosa chinensis HOM05D006387 ORTHO05D008533 5.6e-21 105.5 135 50.4
Ah.03g140080 Amaranthus hybridus HOM05D006387 ORTHO05D008533 4.7e-20 102.4 71 62.0
Hma1.2p1_0119F.1_g056580 Hydrangea macrophylla HOM05D006387 ORTHO05D008533 1.5e-18 97.4 53 81.1
HanXRQChr16g0520881 Helianthus annuus HOM05D006387 ORTHO05D008533 1.1e-13 81.3 51 76.5
vmacro18230 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 1.6e-12 77.4 60 61.7
vmacro18321 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 2.8e-12 76.6 55 61.8
vmacro18566 Vaccinium macrocarpon HOM05D006387 ORTHO05D011088 1.0e-11 74.7 51 66.7
HPP92_016750 Vanilla planifolia HOM05D006387 ORTHO05D008533 5.8e-10 68.9 82 50.0
SMO004G0012 Selaginella moellendorffii HOM05D006387 ORTHO05D008533 6.4e-09 65.5 43 67.4
Actinidia06523 Actinidia chinensis HOM05D009440 ORTHO05D011919 7.0e-08 62.0 43 72.1
Ah.03g140070 Amaranthus hybridus HOM05D006387 ORTHO05D008533 1.2e-07 61.2 53 58.5


User provided reference genes

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