Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G018400 Citrullus lanatus HOM05D006593 ORTHO05D008512 1.4e-93 346.3 176 100.0
MELO3C007718.2 Cucumis melo HOM05D006593 ORTHO05D008512 1.0e-88 330.1 175 94.9
CsaV3_6G045050 Cucumis sativus L. HOM05D006593 ORTHO05D008512 2.3e-88 328.9 175 94.3
Sed0000560 Sechium edule HOM05D006593 ORTHO05D008512 3.8e-83 311.6 175 90.3
Cfa006891 Carpinus fangiana HOM05D006593 ORTHO05D008512 3.2e-74 282.0 175 82.3
QL06p035616 Quercus lobata HOM05D006593 ORTHO05D008512 5.5e-74 281.2 175 80.0
CiPaw.07G048200 Carya illinoinensis HOM05D006593 ORTHO05D008512 3.6e-73 278.5 173 82.1
RcHm_v2.0_Chr2g0111321 Rosa chinensis HOM05D006593 ORTHO05D008512 6.1e-73 277.7 173 79.8
Haze_03860 Corylus avellana HOM05D006593 ORTHO05D008512 1.0e-72 276.9 175 81.1
MD15G1313700 Malus domestica HOM05D006593 ORTHO05D008512 5.2e-72 274.6 171 79.5
FAN19G1905 Fragaria x ananassa HOM05D006593 ORTHO05D008512 6.8e-72 274.2 171 79.5
Prupe.6G198700 Prunus persica HOM05D006593 ORTHO05D008512 6.8e-72 274.2 169 81.1
FvH4_1g19740 Fragaria vesca HOM05D006593 ORTHO05D008512 8.8e-72 273.9 171 78.9
FAN26G1425 Fragaria x ananassa HOM05D006593 ORTHO05D008512 2.6e-71 272.3 171 78.4
Manes.13G098700 Manihot esculenta HOM05D006593 ORTHO05D008512 6.3e-70 267.7 172 80.2
Thecc.01G091500 Theobroma cacao HOM05D006593 ORTHO05D008512 1.4e-69 266.5 171 77.8
FAN28G2735 Fragaria x ananassa HOM05D006593 ORTHO05D008512 3.1e-69 265.4 171 77.8
Dinv01622 Davidia involucrata HOM05D006593 ORTHO05D008512 7.0e-69 264.2 173 77.5
COL.COLO4_27348 Corchorus olitorius HOM05D006593 ORTHO05D008512 1.2e-68 263.5 171 77.2
Gorai.003G043400 Gossypium raimondii HOM05D006593 ORTHO05D008512 3.5e-68 261.9 171 76.0
Gohir.D03G042700 Gossypium hirsutum HOM05D006593 ORTHO05D008512 1.0e-67 260.4 171 75.4
TAR628G0061 Trochodendron aralioides HOM05D006593 ORTHO05D008512 1.0e-67 260.4 173 75.7
Gohir.A02G131300 Gossypium hirsutum HOM05D006593 ORTHO05D008512 1.7e-67 259.6 171 76.0
TWI53G0534 Tripterygium wilfordii HOM05D006593 ORTHO05D008512 1.7e-67 259.6 170 77.1
Thhalv10000032m.g Eutrema salsugineum HOM05D006593 ORTHO05D008512 8.6e-67 257.3 175 74.9
MBI06_g07364_MAGBIO Magnolia biondii HOM05D006593 ORTHO05D008512 8.6e-67 257.3 174 74.1
CANSAT01G0713 Cannabis sativa HOM05D006593 ORTHO05D008512 1.1e-66 256.9 171 78.4
Nn5g29896 Nelumbo nucifera HOM05D006593 ORTHO05D008512 1.9e-66 256.1 173 72.8
VMungo1215G1341 Vigna mungo HOM05D006593 ORTHO05D008512 3.2e-66 255.4 175 73.7
Actinidia06518 Actinidia chinensis HOM05D006593 ORTHO05D008512 4.2e-66 255.0 173 75.7
Lj2g0020402 Lotus japonicus HOM05D006593 ORTHO05D008512 5.5e-66 254.6 177 73.4
BcaB08g35096 Brassica carinata HOM05D006593 ORTHO05D008512 7.2e-66 254.2 170 75.9
Aqoxy5G01304_Aqoxy5G01305 Aquilegia oxysepala HOM05D006593 ORTHO05D008512 1.6e-65 253.1 175 73.7
CSS0021282 Camellia sinensis var. sinensis HOM05D006593 ORTHO05D008512 1.6e-65 253.1 175 74.3
BcaC07g41050 Brassica carinata HOM05D006593 ORTHO05D008512 2.1e-65 252.7 175 73.7
C08p40530 Brassica napus HOM05D006593 ORTHO05D008512 2.1e-65 252.7 175 73.7
Phvul.002G147900 Phaseolus vulgaris HOM05D006593 ORTHO05D008512 2.1e-65 252.7 174 73.0
AT2G22530 Arabidopsis thaliana HOM05D006593 ORTHO05D008512 2.8e-65 252.3 176 75.6
A09p57440 Brassica napus HOM05D006593 ORTHO05D008512 2.8e-65 252.3 175 74.3
BraA09t41136Z Brassica rapa HOM05D006593 ORTHO05D008512 2.8e-65 252.3 175 74.3
BolC8t51623H Brassica oleracea HOM05D006593 ORTHO05D008512 8.0e-65 250.8 175 73.1
Lalb_Chr05g0216291 Lupinus albus HOM05D006593 ORTHO05D008512 1.8e-64 249.6 175 73.1
THA.LOC104824911 Tarenaya hassleriana HOM05D006593 ORTHO05D008512 1.2e-63 246.9 175 72.0
Rhsim10G0172300 Rhododendron simsii HOM05D006593 ORTHO05D008512 2.0e-63 246.1 171 72.5
SGA_v2.0_scaffold45G17238 Striga asiatica HOM05D006593 ORTHO05D008512 3.4e-63 245.4 173 72.3
Ca_04534_v3 Cicer arietinum L. HOM05D006593 ORTHO05D008512 5.7e-63 244.6 175 71.4
Carub.0004s0170 Capsella rubella HOM05D006593 ORTHO05D008512 7.5e-63 244.2 175 71.4
SalBow5G0109 Salvia bowleyana HOM05D006593 ORTHO05D008512 7.5e-63 244.2 173 72.8
Eucgr.I00480 Eucalyptus grandis HOM05D006593 ORTHO05D008512 1.3e-62 243.4 173 71.1
Eucgr.I00482 Eucalyptus grandis HOM05D006593 ORTHO05D008512 1.3e-62 243.4 172 71.5
Glyma.01G023700 Glycine max HOM05D006593 ORTHO05D008512 1.3e-62 243.4 175 73.1
GSVIVG01006735001 Vitis vinifera HOM05D006593 ORTHO05D008512 1.3e-62 243.4 171 74.9
Oeu012466.1 Olea europaea HOM05D006593 ORTHO05D008512 2.8e-62 242.3 174 70.7
vmacro13002 Vaccinium macrocarpon HOM05D006593 ORTHO05D008512 2.8e-62 242.3 182 72.5
Cc07_g14190 Coffea canephora HOM05D006593 ORTHO05D008512 4.9e-62 241.5 173 72.8
Lsat_1_v5_gn_3_61401 Lactuca sativa HOM05D006593 ORTHO05D008512 4.9e-62 241.5 173 69.4
Psat2g085480 Pisum sativum HOM05D006593 ORTHO05D008512 1.1e-61 240.4 175 70.3
Ah.02g123650 Amaranthus hybridus HOM05D006593 ORTHO05D008512 1.4e-61 240.0 172 70.9
Sopen11g005350 Solanum pennellii HOM05D006593 ORTHO05D008512 5.4e-61 238.0 172 71.5
PGSC0003DMG400016138 Solanum tuberosum HOM05D006593 ORTHO05D008512 9.2e-61 237.3 172 71.5
arahy.Tifrunner.gnm1.ann1.67PG0W Arachis hypogaea HOM05D006593 ORTHO05D008512 1.6e-60 236.5 172 71.5
arahy.Tifrunner.gnm1.ann1.ZAKH7Z Arachis hypogaea HOM05D006593 ORTHO05D008512 1.6e-60 236.5 172 71.5
Solyc11g010550.2 Solanum lycopersicum HOM05D006593 ORTHO05D008512 1.6e-60 236.5 172 70.9
Medtr5g032210 Medicago truncatula HOM05D006593 ORTHO05D008512 2.0e-60 236.1 176 68.8
Nitab4.5_0004153g0020 Nicotiana tabacum HOM05D006593 ORTHO05D008512 2.7e-60 235.7 179 70.4
Zm00001eb257050 Zea mays HOM05D006593 ORTHO05D008512 2.7e-60 235.7 162 72.8
PSO017G0451 Papaver somniferum HOM05D006593 ORTHO05D008512 4.5e-60 235.0 175 69.1
PGR031G1437 Punica granatum HOM05D006593 ORTHO05D008512 1.7e-59 233.0 175 68.0
AUR62003656 Chenopodium quinoa HOM05D006593 ORTHO05D008512 2.9e-59 232.3 173 68.2
HanXRQChr17g0550591 Helianthus annuus HOM05D006593 ORTHO05D008512 2.9e-59 232.3 171 66.1
Os02g0781600 Oryza sativa ssp. japonica HOM05D006593 ORTHO05D008512 2.9e-59 232.3 171 67.3
Potri.007G010600 Populus trichocarpa HOM05D006593 ORTHO05D008512 3.8e-59 231.9 164 72.6
ATR0665G270 Amborella trichopoda HOM05D006593 ORTHO05D008512 8.6e-59 230.7 170 70.6
EL10Ac6g15212 Beta vulgaris HOM05D006593 ORTHO05D008512 1.5e-58 229.9 173 65.3
Cpa.g.sc55.33 Carica papaya HOM05D006593 ORTHO05D008512 1.5e-58 229.9 171 70.8
Lju188A1G72 Lonicera japonica HOM05D006593 ORTHO05D008512 1.5e-58 229.9 175 68.6
PSO170G1479 Papaver somniferum HOM05D006593 ORTHO05D008512 4.3e-58 228.4 173 67.6
SEGI_03063 Sequoiadendron giganteum HOM05D006593 ORTHO05D008512 1.4e-56 223.4 173 67.1
AL4G12066 Arabidopsis lyrata HOM05D006593 ORTHO05D008512 1.8e-56 223.0 177 69.5
HPP92_005968 Vanilla planifolia HOM05D006593 ORTHO05D008512 7.5e-55 217.6 169 66.3
HPP92_005975 Vanilla planifolia HOM05D006593 ORTHO05D008512 7.5e-55 217.6 169 66.3
unitig_748.g8644 Utricularia gibba HOM05D006593 ORTHO05D008512 1.6e-52 209.9 179 61.5
ECA246G1560 Erigeron canadensis HOM05D006593 ORTHO05D004993 2.7e-52 209.1 158 67.7
Nitab4.5_0001468g0100 Nicotiana tabacum HOM05D006593 ORTHO05D008512 2.3e-51 206.1 172 65.1
Duzib147G0804 Durio zibethinus HOM05D006593 ORTHO05D008512 1.9e-50 203.0 141 72.3
AUR62017964 Chenopodium quinoa HOM05D006593 ORTHO05D008512 3.3e-50 202.2 172 62.2
Sabra07G0008000 Salix brachista HOM05D006593 ORTHO05D008512 4.3e-50 201.8 189 61.4
Mapoly0005s0227 Marchantia polymorpha HOM05D006593 ORTHO05D008512 1.5e-47 193.4 168 61.3
CAN.G1724.3 Capsicum annuum HOM05D006593 ORTHO05D008512 5.8e-47 191.4 137 71.5
Pp3c8_800 Physcomitrium patens HOM05D006593 ORTHO05D008512 2.2e-46 189.5 167 58.1
Eucgr.I00548 Eucalyptus grandis HOM05D006593 ORTHO05D008512 4.9e-46 188.3 173 59.0
Hund16537 Selenicereus undatus HOM05D006593 ORTHO05D008512 1.3e-43 180.3 131 69.5
Peaxi162Scf00778g00014 Petunia axillaris HOM05D006593 ORTHO05D008512 4.3e-42 175.3 105 81.9
Sc16g0000540 Simmondsia chinensis HOM05D006593 ORTHO05D004993 2.0e-39 166.4 151 59.6
DCAR_014189 Daucus carota HOM05D006593 ORTHO05D008512 1.3e-38 163.7 102 75.5
GSVIVG01006123001 Vitis vinifera HOM05D006593 ORTHO05D008512 7.1e-37 157.9 127 66.9
TPR.G29973 Trifolium pratense HOM05D006593 ORTHO05D008512 3.5e-36 155.6 97 79.4
SGA_v2.0_scaffold238G43950 Striga asiatica HOM05D006593 ORTHO05D008512 1.6e-33 146.7 172 52.9
Eucgr.I00552 Eucalyptus grandis HOM05D006593 ORTHO05D008512 7.6e-23 111.3 61 86.9
TPR.G40431 Trifolium pratense HOM05D006593 ORTHO05D008512 5.8e-15 85.1 74 60.8
Peaxi162Scf00341g00622 Petunia axillaris HOM05D004630 ORTHO05D005727 2.8e-09 66.2 172 28.5
THA.LOC104820866 Tarenaya hassleriana HOM05D004630 ORTHO05D005727 3.7e-09 65.9 97 37.1
SHI11357 Sapria himalayana HOM05D004630 ORTHO05D005727 8.1e-09 64.7 158 27.2
Eucgr.B01002 Eucalyptus grandis HOM05D004630 ORTHO05D005727 1.8e-08 63.5 169 28.4
RcHm_v2.0_Chr4g0428061 Rosa chinensis HOM05D004630 ORTHO05D005727 2.4e-08 63.2 154 27.3
Solyc07g014610.4 Solanum lycopersicum HOM05D004630 ORTHO05D005727 2.4e-08 63.2 156 28.8
Sopen07g005480 Solanum pennellii HOM05D004630 ORTHO05D005727 2.4e-08 63.2 156 28.8
TAR636G2703 Trochodendron aralioides HOM05D004630 ORTHO05D005727 2.4e-08 63.2 151 27.8
Cpa.g.sc80.37 Carica papaya HOM05D004630 ORTHO05D005727 4.0e-08 62.4 155 27.1
QL10p044591 Quercus lobata HOM05D006593 ORTHO05D004993 4.0e-08 62.4 31 93.5
Aqoxy7G01739 Aquilegia oxysepala HOM05D004630 ORTHO05D005727 5.3e-08 62.0 153 26.8
MD16G1131900 Malus domestica HOM05D004630 ORTHO05D005727 5.3e-08 62.0 161 27.3
CDE08G0728 Ceratophyllum demersum HOM05D004630 ORTHO05D005727 6.9e-08 61.6 95 32.6
Hma1.2p1_0482F.1_g162689 Hydrangea macrophylla HOM05D004630 ORTHO05D005727 6.9e-08 61.6 159 27.7
Hma1.2p1_1944F.1_g308540 Hydrangea macrophylla HOM05D004630 ORTHO05D005727 6.9e-08 61.6 159 27.7
Ciclev10023873m.g Citrus clementina HOM05D004630 ORTHO05D005727 9.0e-08 61.2 160 28.8
Sp6g26980 Schrenkiella parvula HOM05D004630 ORTHO05D005727 9.0e-08 61.2 155 26.5
CARHR195960 Cardamine hirsuta HOM05D004630 ORTHO05D005727 1.2e-07 60.8 97 35.1
Thhalv10012592m.g Eutrema salsugineum HOM05D004630 ORTHO05D005727 1.2e-07 60.8 97 32.0
Manes.11G127500 Manihot esculenta HOM05D004630 ORTHO05D005727 1.2e-07 60.8 95 33.7
PGSC0003DMG400020700 Solanum tuberosum HOM05D004630 ORTHO05D005727 1.2e-07 60.8 156 28.2
AT5G17250 Arabidopsis thaliana HOM05D004630 ORTHO05D005727 1.5e-07 60.5 97 34.0
Carub.0006s1544 Capsella rubella HOM05D004630 ORTHO05D005727 1.5e-07 60.5 97 35.1
CAN.G689.26 Capsicum annuum HOM05D004630 ORTHO05D005727 1.5e-07 60.5 170 27.1
Cc03_g11340 Coffea canephora HOM05D004630 ORTHO05D005727 1.5e-07 60.5 118 28.8
Thecc.07G164200 Theobroma cacao HOM05D004630 ORTHO05D005727 1.5e-07 60.5 169 26.6
Ciclev10018715m.g Citrus clementina HOM05D004630 ORTHO05D005727 2.0e-07 60.1 160 28.8
MD13G1136600 Malus domestica HOM05D004630 ORTHO05D005727 2.0e-07 60.1 161 26.1
Os10g0170300 Oryza sativa ssp. japonica HOM05D004630 ORTHO05D005727 2.0e-07 60.1 96 33.3
Potri.003G059300 Populus trichocarpa HOM05D004630 ORTHO05D005727 2.0e-07 60.1 95 34.7
Lj2g0001674 Lotus japonicus HOM05D004630 ORTHO05D005727 2.6e-07 59.7 97 29.9
QL10p045557 Quercus lobata HOM05D000141 ORTHO05D004993 3.4e-07 59.3 29 96.6
ATR0019G053 Amborella trichopoda HOM05D004630 ORTHO05D005727 4.5e-07 58.9 148 29.1
BcaB08g36795 Brassica carinata HOM05D004630 ORTHO05D005727 4.5e-07 58.9 97 30.9
BcaC04g18817 Brassica carinata HOM05D004630 ORTHO05D005727 4.5e-07 58.9 97 30.9
A10p22150 Brassica napus HOM05D004630 ORTHO05D005727 4.5e-07 58.9 97 30.9
C09p59940 Brassica napus HOM05D004630 ORTHO05D005727 4.5e-07 58.9 97 30.9
BolC9t58830H Brassica oleracea HOM05D004630 ORTHO05D005727 4.5e-07 58.9 97 30.9
BraA10t44274Z Brassica rapa HOM05D004630 ORTHO05D005727 4.5e-07 58.9 97 30.9
Gohir.A01G096700 Gossypium hirsutum HOM05D004630 ORTHO05D005727 4.5e-07 58.9 169 26.0
Gohir.D01G081000 Gossypium hirsutum HOM05D004630 ORTHO05D005727 4.5e-07 58.9 169 26.0
Gorai.002G105900 Gossypium raimondii HOM05D004630 ORTHO05D005727 4.5e-07 58.9 169 26.0
FvH4_4g21830 Fragaria vesca HOM05D004630 ORTHO05D005727 5.8e-07 58.5 154 26.6
FAN12G2264 Fragaria x ananassa HOM05D004630 ORTHO05D005727 5.8e-07 58.5 154 26.6
Aa31LG11G12420 Aethionema arabicum HOM05D004630 ORTHO05D005727 7.6e-07 58.2 97 33.0
Duzib187G1410 Durio zibethinus HOM05D004630 ORTHO05D005727 7.6e-07 58.2 169 26.6
AL6G28300 Arabidopsis lyrata HOM05D004630 ORTHO05D005727 9.9e-07 57.8 166 26.5
arahy.Tifrunner.gnm1.ann1.N7874Q Arachis hypogaea HOM05D004630 ORTHO05D005727 9.9e-07 57.8 97 32.0
arahy.Tifrunner.gnm1.ann1.W5Q7UV Arachis hypogaea HOM05D004630 ORTHO05D005727 9.9e-07 57.8 97 32.0
FAN07G0643 Fragaria x ananassa HOM05D004630 ORTHO05D005727 9.9e-07 57.8 154 26.6
Lj4g0015635 Lotus japonicus HOM05D004630 ORTHO05D005727 9.9e-07 57.8 156 26.3
Oeu028192.1 Olea europaea HOM05D004630 ORTHO05D005727 9.9e-07 57.8 171 28.7
Atru.chr1.2080 Acer truncatum HOM05D004630 ORTHO05D005727 1.3e-06 57.4 96 32.3
CANSAT11G0088 Cannabis sativa HOM05D004630 ORTHO05D005727 1.3e-06 57.4 158 24.7
HanXRQChr17g0554761 Helianthus annuus HOM05D004630 ORTHO05D005727 1.3e-06 57.4 93 29.0
Hund12270 Selenicereus undatus HOM05D004630 ORTHO05D005727 1.3e-06 57.4 158 25.3
CSS0009392 Camellia sinensis var. sinensis HOM05D004630 ORTHO05D005727 1.7e-06 57.0 158 27.8
CSS0039221 Camellia sinensis var. sinensis HOM05D004630 ORTHO05D005727 1.7e-06 57.0 158 27.8
CDE03G0370 Ceratophyllum demersum HOM05D006593 ORTHO05D008512 1.7e-06 57.0 32 81.2
Nn7g38087 Nelumbo nucifera HOM05D004630 ORTHO05D005727 1.7e-06 57.0 98 33.7
SEGI_14972 Sequoiadendron giganteum HOM05D004630 ORTHO05D005727 1.7e-06 57.0 95 31.6
GSVIVG01034228001 Vitis vinifera HOM05D004630 ORTHO05D005727 1.7e-06 57.0 154 27.3
Sc13g0008160 Simmondsia chinensis HOM05D004630 ORTHO05D005727 2.2e-06 56.6 95 34.7
VMungo1215G1222 Vigna mungo HOM05D004630 ORTHO05D005727 2.2e-06 56.6 162 24.1
Lalb_Chr12g0200461 Lupinus albus HOM05D004630 ORTHO05D005727 2.9e-06 56.2 109 29.4
Pp3c19_7340 Physcomitrium patens HOM05D004630 ORTHO05D005727 2.9e-06 56.2 96 33.3
Nitab4.5_0000848g0060 Nicotiana tabacum HOM05D004630 ORTHO05D005727 3.8e-06 55.8 155 27.7
TPR.G12666 Trifolium pratense HOM05D004630 ORTHO05D005727 3.8e-06 55.8 97 28.9
Actinidia21906 Actinidia chinensis HOM05D004630 ORTHO05D005727 4.9e-06 55.5 173 24.9
AagrBONN_evm.TU.Sc2ySwM_344.4351 Anthoceros agrestis HOM05D004630 ORTHO05D005727 4.9e-06 55.5 99 35.4
MSTRG.13783 Avicennia marina HOM05D004630 ORTHO05D005727 4.9e-06 55.5 95 30.5
Sed0000779 Sechium edule HOM05D004630 ORTHO05D005727 4.9e-06 55.5 161 25.5
Nitab4.5_0004432g0030 Nicotiana tabacum HOM05D004630 ORTHO05D005727 6.4e-06 55.1 155 27.7
QL02p088183 Quercus lobata HOM05D004630 ORTHO05D005727 6.4e-06 55.1 154 25.3
Sabra03G0033900 Salix brachista HOM05D004630 ORTHO05D005727 6.4e-06 55.1 95 31.6
PSO210G5682 Papaver somniferum HOM05D004630 ORTHO05D005727 8.4e-06 54.7 99 31.3


User provided reference genes

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