Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G018190 Citrullus lanatus HOM05D007087 ORTHO05D008968 4.2e-104 381.3 189 100.0
CsaV3_6G044750 Cucumis sativus L. HOM05D007087 ORTHO05D008968 1.5e-29 133.7 74 94.6
MELO3C007697.2 Cucumis melo HOM05D007087 ORTHO05D008968 2.0e-29 133.3 73 95.9
Atru.chr3.1157 Acer truncatum HOM05D007087 ORTHO05D008968 2.2e-28 129.8 73 91.8
Atru.chr3.1173 Acer truncatum HOM05D007087 ORTHO05D008968 2.2e-28 129.8 73 91.8
Dinv36975 Davidia involucrata HOM05D007087 ORTHO05D008968 4.9e-28 128.6 81 84.0
CSS0037594 Camellia sinensis var. sinensis HOM05D007087 ORTHO05D008968 6.4e-28 128.3 73 91.8
CSS0044951 Camellia sinensis var. sinensis HOM05D007087 ORTHO05D008968 6.4e-28 128.3 73 91.8
Cfa006833 Carpinus fangiana HOM05D007087 ORTHO05D008968 6.4e-28 128.3 73 91.8
Dinv27003 Davidia involucrata HOM05D007087 ORTHO05D008968 6.4e-28 128.3 73 91.8
Hma1.2p1_0080F.1_g042080 Hydrangea macrophylla HOM05D007087 ORTHO05D008968 6.4e-28 128.3 73 91.8
QL06p037367 Quercus lobata HOM05D007087 ORTHO05D008968 6.4e-28 128.3 73 91.8
Lsat_1_v5_gn_4_156341 Lactuca sativa HOM05D007087 ORTHO05D008968 8.4e-28 127.9 73 91.8
FvH4_1g19040 Fragaria vesca HOM05D007087 ORTHO05D008968 1.4e-27 127.1 73 90.4
FAN23G1122 Fragaria x ananassa HOM05D007087 ORTHO05D008968 1.4e-27 127.1 73 90.4
FAN26G0060 Fragaria x ananassa HOM05D007087 ORTHO05D008968 1.4e-27 127.1 73 90.4
FAN28G2302 Fragaria x ananassa HOM05D007087 ORTHO05D008968 1.4e-27 127.1 73 90.4
PGR102G1803 Punica granatum HOM05D007087 ORTHO05D008968 1.4e-27 127.1 73 90.4
RcHm_v2.0_Chr2g0110041 Rosa chinensis HOM05D007087 ORTHO05D008968 1.4e-27 127.1 73 90.4
CiPaw.07G042900 Carya illinoinensis HOM05D007087 ORTHO05D008968 1.9e-27 126.7 73 90.4
COL.COLO4_11683 Corchorus olitorius HOM05D007087 ORTHO05D008968 1.9e-27 126.7 73 90.4
ECA232G4432 Erigeron canadensis HOM05D007087 ORTHO05D008968 1.9e-27 126.7 73 90.4
HanXRQChr09g0262861 Helianthus annuus HOM05D007087 ORTHO05D008968 1.9e-27 126.7 73 90.4
vmacro18037 Vaccinium macrocarpon HOM05D007087 ORTHO05D008968 1.9e-27 126.7 73 91.8
arahy.Tifrunner.gnm1.ann1.6G1T2R Arachis hypogaea HOM05D007087 ORTHO05D008968 2.4e-27 126.3 73 90.4
arahy.Tifrunner.gnm1.ann1.NU08EI Arachis hypogaea HOM05D007087 ORTHO05D008968 2.4e-27 126.3 73 90.4
Ca_13466_v3 Cicer arietinum L. HOM05D007087 ORTHO05D008968 2.4e-27 126.3 73 90.4
Glyma.01G020200 Glycine max HOM05D007087 ORTHO05D008968 2.4e-27 126.3 73 90.4
Lj2g0010143 Lotus japonicus HOM05D007087 ORTHO05D008968 2.4e-27 126.3 73 90.4
Medtr5g030935 Medicago truncatula HOM05D007087 ORTHO05D008968 2.4e-27 126.3 73 90.4
Phvul.002G143500 Phaseolus vulgaris HOM05D007087 ORTHO05D008968 2.4e-27 126.3 73 90.4
Psat2g134040 Pisum sativum HOM05D007087 ORTHO05D008968 2.4e-27 126.3 73 90.4
Sc16g0000740 Simmondsia chinensis HOM05D007087 ORTHO05D008968 2.4e-27 126.3 73 89.0
TAR376G1208 Trochodendron aralioides HOM05D007087 ORTHO05D008968 2.4e-27 126.3 73 89.0
TWI77G0839 Tripterygium wilfordii HOM05D007087 ORTHO05D008968 3.2e-27 125.9 73 90.4
CiPaw.08G145100 Carya illinoinensis HOM05D007087 ORTHO05D008968 4.2e-27 125.6 73 89.0
Duzib264G0202 Durio zibethinus HOM05D007087 ORTHO05D008968 4.2e-27 125.6 73 89.0
Gohir.A11G208700 Gossypium hirsutum HOM05D007087 ORTHO05D008968 4.2e-27 125.6 73 89.0
Gohir.D11G214800 Gossypium hirsutum HOM05D007087 ORTHO05D008968 4.2e-27 125.6 73 89.0
Gorai.007G230500 Gossypium raimondii HOM05D007087 ORTHO05D008968 4.2e-27 125.6 73 89.0
Oeu024989.2 Olea europaea HOM05D007087 ORTHO05D008968 4.2e-27 125.6 73 89.0
Actinidia16395 Actinidia chinensis HOM05D007087 ORTHO05D008968 5.4e-27 125.2 73 89.0
HanXRQChr11g0324431 Helianthus annuus HOM05D007087 ORTHO05D008968 5.4e-27 125.2 73 89.0
MD01G1044400 Malus domestica HOM05D007087 ORTHO05D008968 5.4e-27 125.2 73 89.0
Manes.12G121500 Manihot esculenta HOM05D007087 ORTHO05D008968 5.4e-27 125.2 73 89.0
Prupe.6G209300 Prunus persica HOM05D007087 ORTHO05D008968 5.4e-27 125.2 73 89.0
TPR.G37071 Trifolium pratense HOM05D007087 ORTHO05D008968 5.4e-27 125.2 73 89.0
EL10Ac6g13306 Beta vulgaris HOM05D007087 ORTHO05D008968 9.3e-27 124.4 73 86.3
Ciclev10027006m.g Citrus clementina HOM05D007087 ORTHO05D008968 9.3e-27 124.4 73 89.0
Glyma.09G202200 Glycine max HOM05D007087 ORTHO05D008968 9.3e-27 124.4 73 89.0
Actinidia22784 Actinidia chinensis HOM05D007087 ORTHO05D008968 1.2e-26 124.0 73 87.7
Eucgr.I00598 Eucalyptus grandis HOM05D007087 ORTHO05D008968 1.2e-26 124.0 73 89.0
Eucgr.I00599 Eucalyptus grandis HOM05D007087 ORTHO05D008968 1.2e-26 124.0 73 89.0
Duzib147G0219 Durio zibethinus HOM05D007087 ORTHO05D008968 1.6e-26 123.6 73 87.7
MBI16_g36494_MAGBIO Magnolia biondii HOM05D007087 ORTHO05D008968 1.6e-26 123.6 73 87.7
TWI53G1267 Tripterygium wilfordii HOM05D007087 ORTHO05D008968 1.6e-26 123.6 73 89.0
AL4G12190 Arabidopsis lyrata HOM05D007087 ORTHO05D008968 2.1e-26 123.2 73 87.7
AT2G22640 Arabidopsis thaliana HOM05D007087 ORTHO05D008968 2.1e-26 123.2 73 87.7
BcaB06g27810 Brassica carinata HOM05D007087 ORTHO05D008968 2.1e-26 123.2 73 87.7
Carub.0004s0180 Capsella rubella HOM05D007087 ORTHO05D008968 2.1e-26 123.2 73 87.7
Thhalv10000402m.g Eutrema salsugineum HOM05D007087 ORTHO05D008968 2.1e-26 123.2 73 87.7
Lalb_Chr05g0216201 Lupinus albus HOM05D007087 ORTHO05D008968 2.1e-26 123.2 73 87.7
Sp4g01675 Schrenkiella parvula HOM05D007087 ORTHO05D008968 2.1e-26 123.2 73 87.7
Cpa.g.sc129.16 Carica papaya HOM05D007087 ORTHO05D008968 2.7e-26 122.9 73 87.7
AUR62005889 Chenopodium quinoa HOM05D007087 ORTHO05D008968 2.7e-26 122.9 73 84.9
COL.COLO4_02760 Corchorus olitorius HOM05D007087 ORTHO05D008968 2.7e-26 122.9 82 80.5
Thecc.01G084300 Theobroma cacao HOM05D007087 ORTHO05D008968 2.7e-26 122.9 73 87.7
TAR625G1164 Trochodendron aralioides HOM05D007087 ORTHO05D008968 2.7e-26 122.9 73 86.3
Lalb_Chr09g0325791 Lupinus albus HOM05D007087 ORTHO05D008968 3.5e-26 122.5 73 89.0
THA.LOC104807661 Tarenaya hassleriana HOM05D007087 ORTHO05D008968 6.0e-26 121.7 73 86.3
ATR0800G005 Amborella trichopoda HOM05D007087 ORTHO05D008968 1.0e-25 120.9 73 84.9
Migut.L00449 Erythranthe guttata HOM05D007087 ORTHO05D008968 1.3e-25 120.6 73 83.6
THA.LOC104824923 Tarenaya hassleriana HOM05D007087 ORTHO05D008968 1.3e-25 120.6 73 84.9
Hund16615 Selenicereus undatus HOM05D007087 ORTHO05D008968 3.0e-25 119.4 69 88.4
BcaC02g08628 Brassica carinata HOM05D007087 ORTHO05D008968 5.1e-25 118.6 74 86.5
A04p17120 Brassica napus HOM05D007087 ORTHO05D008968 5.1e-25 118.6 74 86.5
C04p51930 Brassica napus HOM05D007087 ORTHO05D008968 5.1e-25 118.6 74 86.5
BolC4t26765H Brassica oleracea HOM05D007087 ORTHO05D008968 5.1e-25 118.6 74 86.5
BraA04t17341Z Brassica rapa HOM05D007087 ORTHO05D008968 5.1e-25 118.6 74 86.5
PSO017G4672 Papaver somniferum HOM05D007087 ORTHO05D008968 5.1e-25 118.6 75 85.3
PSO478G0358 Papaver somniferum HOM05D007087 ORTHO05D008968 5.1e-25 118.6 75 85.3
Aqoxy5G01405 Aquilegia oxysepala HOM05D007087 ORTHO05D008968 8.7e-25 117.9 75 82.7
CDE01G0651 Ceratophyllum demersum HOM05D007087 ORTHO05D008968 4.3e-24 115.5 73 79.5
Zm00001eb259430 Zea mays HOM05D007087 ORTHO05D008968 1.3e-23 114.0 73 80.8
Potri.014G010000 Populus trichocarpa HOM05D007087 ORTHO05D008968 1.8e-22 110.2 80 73.8
CAN.G11.24 Capsicum annuum HOM05D007087 ORTHO05D008968 2.4e-22 109.8 73 79.5
Sed0015245 Sechium edule HOM05D007087 ORTHO05D008968 2.6e-21 106.3 58 93.1
Cc07_g07910 Coffea canephora HOM05D007087 ORTHO05D008968 3.2e-19 99.4 73 74.0
Os02g0829900 Oryza sativa ssp. japonica HOM05D007087 ORTHO05D008968 3.2e-19 99.4 75 74.7
A09p57350 Brassica napus HOM05D007087 ORTHO05D008968 7.1e-19 98.2 72 75.0
BraA09t41128Z Brassica rapa HOM05D007087 ORTHO05D008968 7.1e-19 98.2 72 75.0
Nitab4.5_0000465g0110 Nicotiana tabacum HOM05D007087 ORTHO05D008968 7.1e-19 98.2 73 72.6
Solyc03g043720.4 Solanum lycopersicum HOM05D007087 ORTHO05D008968 7.1e-19 98.2 73 72.6
Sopen03g007570 Solanum pennellii HOM05D007087 ORTHO05D008968 7.1e-19 98.2 73 72.6
PGSC0003DMG400016688 Solanum tuberosum HOM05D007087 ORTHO05D008968 7.1e-19 98.2 73 72.6
Sabra14G0004400 Salix brachista HOM05D007087 ORTHO05D008968 9.3e-19 97.8 61 78.7
Peaxi162Scf00118g00061 Petunia axillaris HOM05D007087 ORTHO05D008968 1.2e-18 97.4 73 72.6
BcaB08g35111 Brassica carinata HOM05D007087 ORTHO05D008968 2.1e-18 96.7 79 68.4
Sabra14G0001400 Salix brachista HOM05D007087 ORTHO05D008968 3.5e-18 95.9 63 76.2
Nn5g29785 Nelumbo nucifera HOM05D007087 ORTHO05D008968 4.3e-16 89.0 46 91.3
Pp3c8_2740 Physcomitrium patens HOM05D007087 ORTHO05D008968 9.6e-16 87.8 68 64.7
Mapoly0132s0041 Marchantia polymorpha HOM05D007087 ORTHO05D008968 3.7e-15 85.9 67 64.2
Aa31LG7G14170 Aethionema arabicum HOM05D007087 ORTHO05D008968 8.2e-15 84.7 47 85.1
AagrBONN_evm.TU.Sc2ySwM_344.2813 Anthoceros agrestis HOM05D007087 ORTHO05D008968 4.0e-14 82.4 67 58.2
Actinidia36375 Actinidia chinensis HOM05D007087 ORTHO05D008968 1.2e-13 80.9 90 50.0
unitig_32.g10648 Utricularia gibba HOM05D007087 ORTHO05D008968 5.8e-13 78.6 45 77.8
SMO144G0170 Selaginella moellendorffii HOM05D007087 ORTHO05D008968 1.7e-12 77.0 69 52.2
Nitab4.5_0008656g0010 Nicotiana tabacum HOM05D007087 ORTHO05D008968 2.9e-12 76.3 56 73.2
FAN19G2569 Fragaria x ananassa HOM05D007087 ORTHO05D008968 9.7e-08 61.2 38 86.8
Nitab4.5_0000465g0080 Nicotiana tabacum HOM05D007087 ORTHO05D008968 2.4e-06 56.6 33 81.8


User provided reference genes

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