Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 0.0e+00 1075.5 570 100.0
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 2.5e-237 825.5 569 80.8
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 6.7e-230 800.8 570 78.9
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 2.9e-156 556.2 516 65.3
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 1.1e-75 288.5 606 39.6
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 6.4e-71 272.7 569 40.4
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 7.0e-70 269.2 577 39.5
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 2.0e-69 267.7 584 39.0
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 2.0e-69 267.7 580 39.0
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 7.3e-67 259.2 466 41.6
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 2.1e-66 257.7 424 41.7
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 5.2e-65 253.1 327 48.3
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 8.9e-65 252.3 590 37.5
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 8.9e-65 252.3 590 37.5
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 8.9e-65 252.3 432 44.0
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 5.8e-64 249.6 525 40.0
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 7.5e-64 249.2 492 41.3
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 9.9e-64 248.8 562 39.9
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 1.3e-63 248.4 425 41.9
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 8.3e-63 245.7 331 47.1
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 1.1e-62 245.4 461 41.4
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 1.9e-62 244.6 411 42.6
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 2.4e-62 244.2 314 51.9
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 7.1e-62 242.7 546 36.8
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 9.2e-62 242.3 509 39.7
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 2.1e-61 241.1 566 38.7
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 3.5e-61 240.4 361 47.1
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 1.7e-60 238.0 302 49.7
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 8.6e-60 235.7 323 49.5
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 1.1e-59 235.3 480 40.4
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 1.5e-59 235.0 306 49.0
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 1.5e-59 235.0 449 39.9
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 1.9e-59 234.6 480 40.4
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 1.9e-59 234.6 598 36.5
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 1.9e-59 234.6 490 38.8
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 9.5e-59 232.3 306 47.1
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 1.6e-58 231.5 595 35.5
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 3.6e-58 230.3 497 39.6
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 3.6e-58 230.3 415 39.8
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 4.7e-58 229.9 595 35.5
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 8.1e-58 229.2 469 40.1
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 1.4e-57 228.4 469 39.0
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 1.4e-57 228.4 426 39.2
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 5.2e-57 226.5 296 46.6
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 5.2e-57 226.5 289 47.4
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.2e-56 225.3 433 39.3
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 1.5e-56 224.9 473 37.2
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 1.5e-56 224.9 326 42.6
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.5e-56 224.9 448 40.4
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 7.6e-56 222.6 448 40.0
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 1.3e-55 221.9 303 49.5
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 6.4e-55 219.5 571 35.7
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 3.2e-54 217.2 467 39.2
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 7.1e-54 216.1 436 39.9
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 9.2e-54 215.7 524 37.8
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 2.1e-53 214.5 421 38.5
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 1.3e-52 211.8 483 37.7
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 2.3e-52 211.1 456 38.6
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 2.3e-52 211.1 450 38.2
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 3.0e-52 210.7 350 41.4
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 1.5e-51 208.4 348 41.4
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 2.5e-51 207.6 446 38.3
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 1.6e-50 204.9 382 40.8
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 2.1e-50 204.5 389 39.6
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 6.2e-50 203.0 380 41.6
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 1.4e-49 201.8 373 40.8
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 1.8e-49 201.4 529 34.2
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 3.1e-49 200.7 550 35.6
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 3.1e-49 200.7 444 38.3
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 5.2e-49 199.9 437 37.8
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 9.0e-49 199.1 394 38.3
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 9.0e-49 199.1 394 38.3
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 1.5e-48 198.4 374 40.4
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 2.0e-48 198.0 382 39.8
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 2.6e-48 197.6 381 41.5
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 3.4e-48 197.2 596 32.7
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 5.8e-48 196.4 413 39.5
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 9.9e-48 195.7 458 36.9
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 1.3e-47 195.3 291 46.0
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 4.9e-47 193.4 315 40.6
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 6.4e-47 193.0 445 36.2
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 6.4e-47 193.0 388 39.2
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 8.4e-47 192.6 398 36.2
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 1.9e-46 191.4 512 35.2
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 7.1e-46 189.5 455 35.2
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 2.1e-45 188.0 533 32.5
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 3.5e-45 187.2 599 34.2
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 1.0e-44 185.7 485 34.6
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 1.1e-43 182.2 507 34.5
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 1.1e-43 182.2 416 35.8
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 1.9e-43 181.4 596 33.1
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 3.3e-43 180.6 382 35.9
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 1.8e-41 174.9 383 37.3
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 4.9e-39 166.8 522 32.8
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 7.1e-38 162.9 284 40.5
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 7.1e-38 162.9 352 35.8
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 9.3e-38 162.5 563 31.8
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 1.8e-36 158.3 258 44.2
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 3.0e-36 157.5 469 34.8
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 3.9e-36 157.1 534 31.6
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 2.1e-34 151.4 520 33.5
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 2.8e-34 151.0 290 38.6
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 4.8e-34 150.2 368 37.5
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 1.5e-32 145.2 401 34.4
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 5.8e-32 143.3 553 31.6
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 3.8e-31 140.6 567 32.8
DCAR_025854 Daucus carota HOM05D005322 ORTHO05D006746 6.4e-31 139.8 254 42.5
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 1.4e-30 138.7 552 31.3
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 1.9e-30 138.3 533 31.5
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 4.2e-30 137.1 553 30.7
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 4.2e-30 137.1 553 30.7
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 4.2e-30 137.1 264 38.3
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 1.6e-29 135.2 550 30.5
Nitab4.5_0008618g0020 Nicotiana tabacum HOM05D005322 ORTHO05D006746 2.7e-29 134.4 184 47.8
SHI12143 Sapria himalayana HOM05D005322 ORTHO05D006746 1.8e-28 131.7 227 42.7
VMungo0464G0122 Vigna mungo HOM05D000074 ORTHO05D006746 5.1e-28 130.2 255 39.6
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 2.5e-27 127.9 285 36.5
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 5.3e-25 120.2 410 32.7
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 8.4e-23 112.8 290 33.1
SEGI_16708 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 9.3e-22 109.4 286 33.2
AagrBONN_evm.TU.Sc2ySwM_368.532 Anthoceros agrestis HOM05D005322 ORTHO05D006746 5.9e-16 90.1 273 27.5
SEGI_41064 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 1.0e-15 89.4 242 31.8
Rhsim10G0081400 Rhododendron simsii HOM05D005322 ORTHO05D006746 8.8e-12 76.3 421 25.4
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 1.1e-11 75.9 343 27.7
Zm00001eb345140 Zea mays HOM05D005322 ORTHO05D006746 1.5e-11 75.5 276 27.2
MBI16_g31813_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 2.2e-10 71.6 173 37.0
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 1.4e-09 68.9 311 26.4
Sabra18G0005500 Salix brachista HOM05D005322 ORTHO05D006746 1.0e-07 62.8 46 60.9


User provided reference genes

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