Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G017300 Citrullus lanatus HOM05D005680 ORTHO05D006334 1.4e-41 172.6 90 100.0
MELO3C007608.2 Cucumis melo HOM05D005680 ORTHO05D006334 5.8e-35 150.6 91 89.0
CsaV3_6G043830 Cucumis sativus L. HOM05D005680 ORTHO05D006334 8.1e-29 130.2 81 86.4
TAR376G0914 Trochodendron aralioides HOM05D005680 ORTHO05D006334 9.9e-19 96.7 84 61.9
EL10Ac6g15662 Beta vulgaris HOM05D005680 ORTHO05D006334 1.3e-18 96.3 84 60.7
Ciclev10026786m.g Citrus clementina HOM05D005680 ORTHO05D006334 8.4e-18 93.6 103 56.3
Haze_15319 Corylus avellana HOM05D005680 ORTHO05D006334 1.0e-15 86.7 83 55.4
Lalb_Chr05g0226041 Lupinus albus HOM05D005680 ORTHO05D006334 1.3e-15 86.3 90 54.4
Sed0000508 Sechium edule HOM05D005680 ORTHO05D006334 1.3e-15 86.3 85 55.3
Ah.03g146390 Amaranthus hybridus HOM05D005680 ORTHO05D006334 3.9e-15 84.7 90 53.3
Thecc.01G068000 Theobroma cacao HOM05D005680 ORTHO05D006334 3.9e-15 84.7 93 53.8
TAR628G1700 Trochodendron aralioides HOM05D005680 ORTHO05D006334 3.9e-15 84.7 82 57.3
Atru.chr13.75 Acer truncatum HOM05D005680 ORTHO05D006334 6.6e-15 84.0 91 52.7
Duzib147G0030 Durio zibethinus HOM05D005680 ORTHO05D006334 6.6e-15 84.0 93 53.8
Glyma.17G164200 Glycine max HOM05D005680 ORTHO05D006334 6.6e-15 84.0 98 52.0
TPR.G23854 Trifolium pratense HOM05D005680 ORTHO05D006334 6.6e-15 84.0 90 55.6
AUR62003966 Chenopodium quinoa HOM05D005680 ORTHO05D006334 1.1e-14 83.2 89 55.1
Medtr4g095330 Medicago truncatula HOM05D005680 ORTHO05D006334 1.1e-14 83.2 80 56.2
PGSC0003DMG400024942 Solanum tuberosum HOM05D005680 ORTHO05D006334 1.1e-14 83.2 89 52.8
Atru.chr3.206 Acer truncatum HOM05D005680 ORTHO05D006334 1.9e-14 82.4 95 53.7
Aqoxy507s001 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 1.9e-14 82.4 64 65.6
Aqoxy5G00968 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 1.9e-14 82.4 64 65.6
Lj4g0022522 Lotus japonicus HOM05D005680 ORTHO05D006334 1.9e-14 82.4 94 52.1
Sopen02g037260 Solanum pennellii HOM05D005680 ORTHO05D006334 1.9e-14 82.4 89 51.7
AUR62038279 Chenopodium quinoa HOM05D005680 ORTHO05D006334 2.5e-14 82.0 89 55.1
TAR625G0576 Trochodendron aralioides HOM05D005680 ORTHO05D006334 2.5e-14 82.0 97 50.5
Ca_13933_v3 Cicer arietinum L. HOM05D005680 ORTHO05D006334 4.3e-14 81.3 86 53.5
Sabra05G0114900 Salix brachista HOM05D005680 ORTHO05D006334 4.3e-14 81.3 83 56.6
Lj2g0023086 Lotus japonicus HOM05D005680 ORTHO05D006334 5.6e-14 80.9 95 50.5
Prupe.6G224700 Prunus persica HOM05D005680 ORTHO05D006334 7.3e-14 80.5 96 51.0
Glyma.05G103100 Glycine max HOM05D005680 ORTHO05D006334 9.6e-14 80.1 85 55.3
Oeu013277.1 Olea europaea HOM05D005680 ORTHO05D006334 9.6e-14 80.1 86 53.5
CAN.G1075.10 Capsicum annuum HOM05D005680 ORTHO05D006334 1.2e-13 79.7 89 51.7
COL.COLO4_11529 Corchorus olitorius HOM05D005680 ORTHO05D006334 1.2e-13 79.7 68 63.2
Potri.005G145200 Populus trichocarpa HOM05D005680 ORTHO05D006334 1.2e-13 79.7 83 54.2
Rhsim10G0104100 Rhododendron simsii HOM05D003166 ORTHO05D003605 1.2e-13 79.7 76 57.9
SalBow5G4637 Salvia bowleyana HOM05D005680 ORTHO05D006334 1.6e-13 79.3 83 49.4
Potri.002G006000 Populus trichocarpa HOM05D005680 ORTHO05D006334 2.1e-13 79.0 89 50.6
Sabra05G0116000 Salix brachista HOM05D005680 ORTHO05D006334 2.8e-13 78.6 83 55.4
arahy.Tifrunner.gnm1.ann1.Y5V9TA Arachis hypogaea HOM05D005680 ORTHO05D006334 4.7e-13 77.8 78 55.1
Gohir.D11G205900 Gossypium hirsutum HOM05D005680 ORTHO05D006334 6.2e-13 77.4 97 48.5
Gorai.007G221000 Gossypium raimondii HOM05D005680 ORTHO05D006334 6.2e-13 77.4 97 48.5
Eucgr.H02278 Eucalyptus grandis HOM05D005680 ORTHO05D006334 8.1e-13 77.0 80 51.2
MD02G1181800 Malus domestica HOM05D005680 ORTHO05D006334 8.1e-13 77.0 91 50.5
Eucgr.H02273 Eucalyptus grandis HOM05D005680 ORTHO05D006334 1.4e-12 76.3 95 47.4
Nn1g04629 Nelumbo nucifera HOM05D005680 ORTHO05D006334 1.4e-12 76.3 98 49.0
Ca_17983_v3 Cicer arietinum L. HOM05D005680 ORTHO05D006334 1.8e-12 75.9 79 54.4
Manes.12G112300 Manihot esculenta HOM05D005680 ORTHO05D006334 1.8e-12 75.9 78 51.3
Nitab4.5_0007941g0020 Nicotiana tabacum HOM05D005680 ORTHO05D006334 1.8e-12 75.9 63 63.5
Phvul.003G237400 Phaseolus vulgaris HOM05D005680 ORTHO05D006334 2.4e-12 75.5 69 58.0
Sed0021632 Sechium edule HOM05D005680 ORTHO05D006334 2.4e-12 75.5 58 74.1
Gohir.A11G217600 Gossypium hirsutum HOM05D005680 ORTHO05D006334 3.1e-12 75.1 97 47.4
PGR031G2681 Punica granatum HOM05D005680 ORTHO05D006334 3.1e-12 75.1 59 59.3
Sc25g0001410 Simmondsia chinensis HOM05D005680 ORTHO05D006334 3.1e-12 75.1 64 59.4
CANSAT01G2162 Cannabis sativa HOM05D005680 ORTHO05D006334 4.0e-12 74.7 75 54.7
Sabra02G0004200 Salix brachista HOM05D005680 ORTHO05D006334 4.0e-12 74.7 96 46.9
THA.LOC104806914 Tarenaya hassleriana HOM05D005680 ORTHO05D006334 4.0e-12 74.7 66 57.6
Nn1g04362 Nelumbo nucifera HOM05D005680 ORTHO05D006334 5.3e-12 74.3 64 62.5
arahy.Tifrunner.gnm1.ann1.C6RKPL Arachis hypogaea HOM05D005680 ORTHO05D006334 6.9e-12 73.9 97 46.4
TPR.G11882 Trifolium pratense HOM05D005680 ORTHO05D006334 9.0e-12 73.6 83 54.2
ClCG11G018960 Citrullus lanatus HOM05D005680 ORTHO05D006334 1.2e-11 73.2 95 47.4
DCAR_003112 Daucus carota HOM05D005680 ORTHO05D006334 1.2e-11 73.2 63 58.7
BcaB01g03924 Brassica carinata HOM05D005680 ORTHO05D006334 1.5e-11 72.8 55 61.8
Psat4g083200 Pisum sativum HOM05D005680 ORTHO05D006334 1.5e-11 72.8 82 51.2
AL4G29360 Arabidopsis lyrata HOM05D005680 ORTHO05D006334 2.0e-11 72.4 62 54.8
Sc19g0003710 Simmondsia chinensis HOM05D005680 ORTHO05D006334 2.0e-11 72.4 60 61.7
BcaC01g05829 Brassica carinata HOM05D005680 ORTHO05D006334 2.6e-11 72.0 55 60.0
C03p22000 Brassica napus HOM05D005680 ORTHO05D006334 2.6e-11 72.0 55 60.0
Nitab4.5_0003878g0080 Nicotiana tabacum HOM05D005680 ORTHO05D006334 2.6e-11 72.0 63 60.3
Sp4g16030 Schrenkiella parvula HOM05D005680 ORTHO05D006334 2.6e-11 72.0 62 56.5
Thecc.02G019100 Theobroma cacao HOM05D005680 ORTHO05D006334 2.6e-11 72.0 78 51.3
TWI09G1440 Tripterygium wilfordii HOM05D005680 ORTHO05D006334 2.6e-11 72.0 101 46.5
Aqoxy7G01353 Aquilegia oxysepala HOM05D005680 ORTHO05D006334 3.4e-11 71.6 55 60.0
AT2G33690 Arabidopsis thaliana HOM05D005680 ORTHO05D006334 4.4e-11 71.2 62 54.8
Carub.0004s1530 Capsella rubella HOM05D005680 ORTHO05D006334 4.4e-11 71.2 62 53.2
Thhalv10017732m.g Eutrema salsugineum HOM05D005680 ORTHO05D006334 4.4e-11 71.2 62 56.5
PSO063G6705 Papaver somniferum HOM05D005680 ORTHO05D006334 5.8e-11 70.9 69 55.1
Psat7g075160 Pisum sativum HOM05D005680 ORTHO05D006334 5.8e-11 70.9 73 54.8
CARHR127690 Cardamine hirsuta HOM05D005680 ORTHO05D006334 7.6e-11 70.5 62 54.8
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 9.9e-11 70.1 58 62.1
THA.LOC104819870 Tarenaya hassleriana HOM05D005680 ORTHO05D006334 1.3e-10 69.7 65 56.9
BcaB06g28712 Brassica carinata HOM05D005680 ORTHO05D006334 1.7e-10 69.3 65 55.4
A04p25910 Brassica napus HOM05D005680 ORTHO05D006334 1.7e-10 69.3 65 55.4
BraA04t18094Z Brassica rapa HOM05D005680 ORTHO05D006334 1.7e-10 69.3 65 55.4
Cpa.g.sc6.54 Carica papaya HOM05D005680 ORTHO05D006334 1.7e-10 69.3 69 58.0
COL.COLO4_17729 Corchorus olitorius HOM05D005680 ORTHO05D006334 1.7e-10 69.3 65 60.0
Nitab4.5_0000419g0130 Nicotiana tabacum HOM05D005680 ORTHO05D006334 2.2e-10 68.9 81 50.6
QL02p015306 Quercus lobata HOM05D005680 ORTHO05D006334 2.2e-10 68.9 69 55.1
Dinv38141 Davidia involucrata HOM05D000032 ORTHO05D004656 3.8e-10 68.2 85 50.6
MELO3C017050.2 Cucumis melo HOM05D005680 ORTHO05D006334 6.4e-10 67.4 88 44.3
HanXRQChr12g0377211 Helianthus annuus HOM05D005680 ORTHO05D006334 8.4e-10 67.0 76 44.7
Medtr8g081540 Medicago truncatula HOM05D005680 ORTHO05D006334 8.4e-10 67.0 75 56.0
FAN02G2432 Fragaria x ananassa HOM05D005680 ORTHO05D006334 1.1e-09 66.6 61 52.5
FAN26G2100 Fragaria x ananassa HOM05D005680 ORTHO05D006334 1.1e-09 66.6 61 52.5
RcHm_v2.0_Chr2g0107321 Rosa chinensis HOM05D005680 ORTHO05D006334 1.1e-09 66.6 66 54.5
BcaC02g07811 Brassica carinata HOM05D005680 ORTHO05D006334 1.4e-09 66.2 65 53.8
C04p63190 Brassica napus HOM05D005680 ORTHO05D006334 1.4e-09 66.2 65 53.8
CsaV3_4G037560 Cucumis sativus L. HOM05D005680 ORTHO05D006334 1.4e-09 66.2 88 43.2
Duzib052G1168 Durio zibethinus HOM05D005680 ORTHO05D006334 1.9e-09 65.9 76 48.7
FvH4_1g17140 Fragaria vesca HOM05D005680 ORTHO05D006334 1.9e-09 65.9 61 52.5
MD15G1292700 Malus domestica HOM05D005680 ORTHO05D006334 1.9e-09 65.9 78 46.2
Aa31LG9G13590 Aethionema arabicum HOM05D005680 ORTHO05D006334 2.4e-09 65.5 69 46.4
SalBow1G8512 Salvia bowleyana HOM05D005680 ORTHO05D006334 4.2e-09 64.7 65 55.4
SHI12592 Sapria himalayana HOM05D005680 ORTHO05D006334 7.1e-09 63.9 79 50.6
ATR0605G143 Amborella trichopoda HOM05D005680 ORTHO05D006334 9.3e-09 63.5 79 45.6
Cpa.g.sc88.61 Carica papaya HOM05D005680 ORTHO05D006334 9.3e-09 63.5 68 52.9
FAN19G0782 Fragaria x ananassa HOM05D005680 ORTHO05D006334 9.3e-09 63.5 61 50.8
PGR102G2721 Punica granatum HOM05D005680 ORTHO05D006334 9.3e-09 63.5 91 44.0
FAN28G2165 Fragaria x ananassa HOM05D005680 ORTHO05D006334 1.2e-08 63.2 79 43.0
FAN23G0577 Fragaria x ananassa HOM05D005680 ORTHO05D006334 1.6e-08 62.8 76 46.1
CDE04G1110 Ceratophyllum demersum HOM05D005680 ORTHO05D006334 2.1e-08 62.4 83 45.8
Carub.0004s0232 Capsella rubella HOM05D005680 ORTHO05D006334 3.5e-08 61.6 90 42.2
Lalb_Chr23g0265551 Lupinus albus HOM05D005680 ORTHO05D006334 3.5e-08 61.6 58 58.6
ECA246G0256 Erigeron canadensis HOM05D005680 ORTHO05D006334 4.6e-08 61.2 69 49.3
CARHR114400 Cardamine hirsuta HOM05D005680 ORTHO05D006334 6.0e-08 60.8 95 44.2
Gorai.012G169600 Gossypium raimondii HOM05D005680 ORTHO05D006334 2.3e-07 58.9 54 51.9
Gohir.D04G176700 Gossypium hirsutum HOM05D005680 ORTHO05D006334 3.0e-07 58.5 54 51.9
AT2G23110 Arabidopsis thaliana HOM05D005680 ORTHO05D006334 5.1e-07 57.8 94 39.4
ATR0030G059 Amborella trichopoda HOM05D005680 ORTHO05D006334 6.6e-07 57.4 61 52.5
Carub.0004s0233 Capsella rubella HOM05D013772 ORTHO05D006334 1.5e-06 56.2 50 58.0
Lsat_1_v5_gn_3_87720 Lactuca sativa HOM05D005680 ORTHO05D006334 1.9e-06 55.8 43 55.8
Gohir.A04G133600 Gossypium hirsutum HOM05D005680 ORTHO05D006334 2.5e-06 55.5 62 46.8
HPP92_012496 Vanilla planifolia HOM05D005680 ORTHO05D006334 2.5e-06 55.5 74 41.9
Sp4g02150 Schrenkiella parvula HOM05D005680 ORTHO05D006334 3.3e-06 55.1 85 40.0
Cfa014129 Carpinus fangiana HOM05D005680 ORTHO05D006334 5.6e-06 54.3 67 49.3


User provided reference genes

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