Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 1.3e-186 656.4 363 100.0
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 4.7e-136 488.4 363 74.9
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 4.6e-131 471.9 363 78.0
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 6.4e-93 345.1 363 61.2
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 2.0e-41 174.1 389 38.8
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 3.1e-39 166.8 371 40.2
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.5e-38 163.3 391 39.6
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 5.9e-38 162.5 371 39.6
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.8e-37 159.8 362 36.7
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 5.0e-37 159.5 359 35.4
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 8.5e-37 158.7 362 35.6
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 5.5e-36 156.0 389 34.4
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 8.0e-35 152.1 357 34.7
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 1.8e-34 151.0 396 38.6
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 4.0e-34 149.8 402 35.8
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 6.8e-34 149.1 342 41.8
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 6.8e-34 149.1 376 37.8
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.2e-33 148.3 386 39.1
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 2.0e-33 147.5 384 35.4
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 1.7e-32 144.4 340 39.7
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 2.2e-32 144.1 368 36.7
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 4.8e-32 142.9 379 35.6
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 6.3e-32 142.5 375 38.1
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 2.4e-31 140.6 385 31.9
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 5.4e-31 139.4 355 34.9
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 7.0e-31 139.0 392 37.8
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 7.7e-30 135.6 384 35.2
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 1.7e-29 134.4 310 38.4
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 1.7e-29 134.4 310 38.4
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 3.8e-29 133.3 348 40.5
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 5.0e-29 132.9 341 37.0
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 6.6e-29 132.5 344 33.4
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 8.6e-29 132.1 356 36.2
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 1.1e-28 131.7 375 37.3
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 1.1e-28 131.7 381 34.9
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 1.1e-28 131.7 374 36.4
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 1.9e-28 131.0 376 35.4
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 5.5e-28 129.4 355 35.5
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 9.5e-28 128.6 341 36.4
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 8.0e-27 125.6 346 39.6
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 1.0e-26 125.2 332 35.2
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 3.0e-26 123.6 377 31.0
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 6.8e-26 122.5 360 31.9
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 1.2e-25 121.7 365 38.9
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 7.5e-25 119.0 341 37.8
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 6.3e-24 115.9 340 36.8
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 6.3e-24 115.9 354 38.4
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 1.4e-23 114.8 350 34.0
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 3.1e-23 113.6 364 32.4
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 4.1e-23 113.2 335 34.6
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 4.1e-23 113.2 331 34.4
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 4.1e-23 113.2 346 39.3
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 5.4e-23 112.8 332 31.3
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 5.4e-23 112.8 353 32.3
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 9.2e-23 112.1 348 39.4
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 2.7e-22 110.5 369 36.6
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 7.8e-22 109.0 358 34.1
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.0e-21 108.6 371 36.4
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 2.3e-21 107.5 338 37.0
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 2.9e-21 107.1 340 31.2
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 2.9e-21 107.1 330 32.7
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 3.9e-21 106.7 369 35.5
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 3.9e-21 106.7 366 36.1
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 3.9e-21 106.7 369 34.1
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 5.0e-21 106.3 366 36.1
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 6.6e-21 105.9 370 33.2
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 8.6e-21 105.5 387 30.2
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 1.1e-20 105.1 337 30.9
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 1.1e-20 105.1 363 33.6
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 1.9e-20 104.4 344 32.3
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 4.3e-20 103.2 339 31.9
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 7.3e-20 102.4 365 34.2
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 2.1e-19 100.9 339 32.4
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 8.0e-19 99.0 338 37.6
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 1.0e-18 98.6 363 31.1
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.4e-18 98.2 363 33.1
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 5.2e-18 96.3 330 31.5
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 6.8e-18 95.9 317 30.6
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 2.6e-17 94.0 209 36.4
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.4e-17 93.6 317 30.6
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 5.8e-17 92.8 370 30.3
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 9.8e-17 92.0 382 31.9
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 1.3e-16 91.7 342 27.5
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 1.3e-16 91.7 342 27.5
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 1.3e-16 91.7 342 27.5
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 2.9e-16 90.5 342 31.3
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 6.4e-16 89.4 317 30.0
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 8.3e-16 89.0 385 29.9
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 1.1e-15 88.6 328 29.0
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 2.4e-15 87.4 348 29.9
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 9.2e-15 85.5 337 28.5
Sed0011473 Sechium edule HOM05D005407 ORTHO05D006544 1.6e-14 84.7 342 30.7
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 4.6e-14 83.2 318 28.3
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 6.0e-14 82.8 233 33.0
CsaV3_2G016540 Cucumis sativus L. HOM05D005407 ORTHO05D006544 7.8e-14 82.4 336 32.4
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 7.8e-14 82.4 338 31.7
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 2.3e-13 80.9 197 32.5
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 3.0e-13 80.5 217 33.6
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 3.9e-13 80.1 204 30.9
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 3.9e-13 80.1 384 33.1
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 8.6e-13 79.0 204 30.9
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 2.5e-12 77.4 282 30.5
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 3.3e-12 77.0 197 31.5
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 4.3e-12 76.6 342 26.9
MELO3C020864.2 Cucumis melo HOM05D005407 ORTHO05D006544 5.6e-12 76.3 336 31.5
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 7.3e-12 75.9 312 28.5
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 9.5e-12 75.5 210 31.0
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 9.5e-12 75.5 208 31.2
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 2.1e-11 74.3 208 30.8
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 2.1e-11 74.3 208 30.8
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 2.1e-11 74.3 336 34.5
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 2.8e-11 73.9 214 32.2
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 2.8e-11 73.9 244 35.7
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 3.6e-11 73.6 336 26.5
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 6.2e-11 72.8 313 32.9
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 8.0e-11 72.4 336 26.5
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 1.1e-10 72.0 347 35.2
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 1.8e-10 71.2 353 28.6
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 1.8e-10 71.2 281 30.2
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 2.3e-10 70.9 335 26.6
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 8.9e-10 68.9 195 30.8
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 4.4e-09 66.6 130 38.5
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 5.8e-09 66.2 216 30.1
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 2.2e-08 64.3 215 27.9
ClCG02G012410 Citrullus lanatus HOM05D005407 ORTHO05D006544 2.2e-08 64.3 367 28.9
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 1.1e-07 62.0 170 30.6
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 1.1e-07 62.0 227 29.5
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 1.9e-07 61.2 343 26.2
ATR0661G396 Amborella trichopoda HOM05D005407 ORTHO05D006544 3.2e-07 60.5 207 28.5
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 7.0e-07 59.3 278 29.5
TAR376G1145 Trochodendron aralioides HOM05D005407 ORTHO05D006544 9.2e-07 58.9 228 38.2
HanXRQChr11g0322471 Helianthus annuus HOM05D005407 ORTHO05D006544 3.5e-06 57.0 366 23.0


User provided reference genes

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