Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G016730 Citrullus lanatus HOM05D007434 ORTHO05D009541 9.9e-52 206.5 101 100.0
CsaV3_6G043150 Cucumis sativus L. HOM05D007434 ORTHO05D009541 2.0e-36 155.6 102 78.4
MELO3C007552.2 Cucumis melo HOM05D007434 ORTHO05D009541 1.0e-35 153.3 102 77.5
Sed0015330 Sechium edule HOM05D007434 ORTHO05D009541 1.1e-26 123.2 96 66.7
Sed0003827 Sechium edule HOM05D007434 ORTHO05D009541 1.1e-21 106.7 98 61.2
Ciclev10027106m.g Citrus clementina HOM05D007434 ORTHO05D009541 3.3e-15 85.1 97 49.5
FvH4_1g15740 Fragaria vesca HOM05D007434 ORTHO05D009541 9.7e-15 83.6 101 45.5
QL06p042177 Quercus lobata HOM05D007434 ORTHO05D009541 4.8e-14 81.3 99 47.5
FAN23G2206 Fragaria x ananassa HOM05D007434 ORTHO05D009541 1.4e-13 79.7 102 44.1
FAN28G0198 Fragaria x ananassa HOM05D007434 ORTHO05D009541 3.1e-13 78.6 101 43.6
Atru.chr3.394 Acer truncatum HOM05D007434 ORTHO05D009541 4.1e-13 78.2 100 43.0
Prupe.7G136000 Prunus persica HOM05D007434 ORTHO05D009541 4.5e-12 74.7 100 43.0
Potri.007G041500 Populus trichocarpa HOM05D007434 ORTHO05D009541 5.9e-12 74.3 105 41.0
CiPaw.01G021200 Carya illinoinensis HOM05D007434 ORTHO05D009541 1.0e-11 73.6 97 47.4
CiPaw.02G009300 Carya illinoinensis HOM05D007434 ORTHO05D009541 1.7e-11 72.8 90 44.4
Atru.chr3.392 Acer truncatum HOM05D007434 ORTHO05D009541 2.2e-11 72.4 99 44.4
Nn5g30204 Nelumbo nucifera HOM05D007434 ORTHO05D009541 2.9e-11 72.0 104 44.2
Nn1g05850 Nelumbo nucifera HOM05D007434 ORTHO05D009541 1.6e-09 66.2 103 35.9
COL.COLO4_11386 Corchorus olitorius HOM05D007434 ORTHO05D009541 3.6e-09 65.1 103 40.8
Lalb_Chr09g0333721 Lupinus albus HOM05D007434 ORTHO05D009541 6.1e-09 64.3 99 40.4
Glyma.11G057300 Glycine max HOM05D007434 ORTHO05D009541 8.0e-09 63.9 103 38.8
Manes.12G100200 Manihot esculenta HOM05D007434 ORTHO05D009541 8.0e-09 63.9 98 40.8
FAN19G1812 Fragaria x ananassa HOM05D007434 ORTHO05D019139 1.0e-08 63.5 82 45.1
Atru.chr3.391 Acer truncatum HOM05D007434 ORTHO05D009541 1.8e-08 62.8 99 40.4
Haze_15425 Corylus avellana HOM05D007434 ORTHO05D009541 2.3e-08 62.4 77 46.8
Manes.12G100300 Manihot esculenta HOM05D007434 ORTHO05D009541 2.3e-08 62.4 88 39.8
Lalb_Chr05g0213231 Lupinus albus HOM05D007434 ORTHO05D009541 3.0e-08 62.0 100 39.0
Lj4g0021906 Lotus japonicus HOM05D007434 ORTHO05D009541 5.2e-08 61.2 102 34.3
Phvul.002G020200 Phaseolus vulgaris HOM05D007434 ORTHO05D009541 5.2e-08 61.2 102 38.2
Aqoxy6G01381 Aquilegia oxysepala HOM05D007434 ORTHO05D009541 6.7e-08 60.8 82 42.7
Glyma.17G176500 Glycine max HOM05D007434 ORTHO05D009541 6.7e-08 60.8 89 40.4
Manes.13G126300 Manihot esculenta HOM05D007434 ORTHO05D009541 6.7e-08 60.8 90 37.8
TPR.G19016 Trifolium pratense HOM05D007434 ORTHO05D009541 6.7e-08 60.8 94 41.5
MD15G1281800 Malus domestica HOM05D007434 ORTHO05D009541 1.1e-07 60.1 100 36.0
Glyma.01G184900 Glycine max HOM05D007434 ORTHO05D009541 1.5e-07 59.7 103 37.9
Glyma.05G083900 Glycine max HOM05D007434 ORTHO05D009541 1.5e-07 59.7 89 40.4
FAN26G1295 Fragaria x ananassa HOM05D007434 ORTHO05D019139 2.0e-07 59.3 83 42.2
Lalb_Chr05g0226641 Lupinus albus HOM05D007434 ORTHO05D009541 3.3e-07 58.5 101 36.6
Medtr5g017710 Medicago truncatula HOM05D007434 ORTHO05D009541 3.3e-07 58.5 89 38.2
Potri.007G041400 Populus trichocarpa HOM05D007434 ORTHO05D009541 4.4e-07 58.2 110 35.5
Lalb_Chr05g0213221 Lupinus albus HOM05D007434 ORTHO05D009541 5.7e-07 57.8 102 39.2
QL06p042201 Quercus lobata HOM05D007434 ORTHO05D009541 7.5e-07 57.4 100 37.0
Sabra07G0037300 Salix brachista HOM05D008581 ORTHO05D009966 9.7e-07 57.0 102 37.3
Potri.007G042000 Populus trichocarpa HOM05D008581 ORTHO05D009966 1.3e-06 56.6 118 36.4
TPR.G21269 Trifolium pratense HOM05D007434 ORTHO05D009541 1.3e-06 56.6 89 39.3
Migut.H00450 Erythranthe guttata HOM05D018578 ORTHO05D020597 1.7e-06 56.2 96 34.4
Lj2g0001941 Lotus japonicus HOM05D007434 ORTHO05D009541 1.7e-06 56.2 104 33.7
Nn1g05851 Nelumbo nucifera HOM05D007434 ORTHO05D009541 1.7e-06 56.2 102 36.3
Ciclev10027212m.g Citrus clementina HOM05D007434 ORTHO05D009541 2.2e-06 55.8 91 40.7
Glyma.17G176700 Glycine max HOM05D007434 ORTHO05D009541 2.2e-06 55.8 95 43.2
Lj2g0026149 Lotus japonicus HOM05D007434 ORTHO05D009541 2.2e-06 55.8 99 38.4
Potri.005G136800 Populus trichocarpa HOM05D008581 ORTHO05D009966 2.2e-06 55.8 107 36.4
Atru.chr3.395 Acer truncatum HOM05D007434 ORTHO05D013638 4.8e-06 54.7 102 32.4
Phvul.003G245601 Phaseolus vulgaris HOM05D007434 ORTHO05D009541 4.8e-06 54.7 89 38.2
Lalb_Chr09g0323081 Lupinus albus HOM05D007434 ORTHO05D009541 6.3e-06 54.3 101 36.6
QL06p042046 Quercus lobata HOM05D008581 ORTHO05D009966 6.3e-06 54.3 110 35.5
arahy.Tifrunner.gnm1.ann1.T0173K Arachis hypogaea HOM05D007434 ORTHO05D009541 8.2e-06 53.9 90 43.3
CANSAT01G1652 Cannabis sativa HOM05D007434 ORTHO05D009541 8.2e-06 53.9 95 33.7


User provided reference genes

Program Settings