Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 0.0e+00 2676.0 1339 100.0
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 0.0e+00 2184.5 1289 86.0
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 0.0e+00 2000.7 1272 80.0
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 0.0e+00 1968.4 1173 85.4
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1180.2 1331 51.5
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 0.0e+00 1176.0 1320 51.4
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 0.0e+00 1146.7 1340 49.3
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1144.4 1343 48.4
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1133.6 1340 49.5
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1120.5 1347 47.6
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 0.0e+00 1114.0 1348 47.2
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 0.0e+00 1112.4 1318 47.9
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 1106.7 1350 47.3
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 0.0e+00 1099.3 1305 47.6
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 0.0e+00 1079.3 1329 47.8
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 1.8e-311 1073.2 1348 47.8
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 5.0e-308 1061.6 1337 47.5
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 8.5e-308 1060.8 1319 47.1
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 1.4e-307 1060.1 1337 47.4
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 3.9e-305 1052.0 1329 46.8
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 2.5e-304 1049.3 1337 46.9
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 7.4e-304 1047.7 1323 46.9
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 9.7e-304 1047.3 1318 46.8
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 9.7e-304 1047.3 1325 46.7
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 5.3e-302 1041.6 1356 46.2
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 2.2e-300 1036.2 1290 47.3
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 8.5e-300 1034.2 1343 46.3
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 8.5e-300 1034.2 1352 46.1
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 1.1e-299 1033.9 1350 45.6
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 1.1e-299 1033.9 1352 46.2
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 7.2e-299 1031.2 1340 45.3
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 1.4e-297 1026.9 1336 46.0
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 1.7e-295 1020.0 1325 45.4
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 4.5e-293 1011.9 1320 45.0
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 5.9e-285 984.9 1222 48.0
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 6.5e-284 981.5 1247 46.6
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 6.1e-282 974.9 1303 44.6
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 5.2e-281 971.8 1440 41.6
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 1.3e-279 967.2 1309 43.9
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 2.7e-274 949.5 1327 43.8
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 2.7e-274 949.5 1354 43.1
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 1.8e-273 946.8 1295 43.4
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 2.8e-271 939.5 1306 42.6
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 5.9e-269 931.8 1361 43.5
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 4.0e-265 919.1 1296 42.8
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 4.0e-265 919.1 1303 42.1
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 1.3e-263 914.1 1298 44.2
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 7.0e-262 908.3 1290 42.6
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 1.2e-261 907.5 1296 42.4
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 3.5e-261 906.0 1300 42.3
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 5.6e-259 898.7 1306 42.5
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 7.3e-259 898.3 1298 42.1
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 1.2e-256 891.0 1349 41.7
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 2.0e-256 890.2 1303 43.1
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 4.4e-256 889.0 1284 42.5
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 9.8e-256 887.9 1230 43.3
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 8.6e-252 874.8 1319 42.0
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 1.5e-251 874.0 1279 42.1
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 7.3e-251 871.7 1343 41.0
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 3.6e-250 869.4 1364 40.7
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 2.3e-249 866.7 1334 40.9
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 8.9e-249 864.8 1302 42.4
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 5.8e-248 862.1 1196 44.3
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 5.8e-248 862.1 1210 42.9
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 1.4e-246 857.4 1279 41.8
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 9.2e-246 854.7 1295 40.8
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 2.7e-245 853.2 1282 41.6
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 2.5e-243 846.7 1353 40.9
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 3.6e-242 842.8 1266 41.9
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 2.2e-239 833.6 1335 41.2
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 1.0e-228 798.1 1314 39.4
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 2.3e-220 770.4 1264 38.6
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 5.8e-216 755.7 1319 38.8
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 4.3e-211 739.6 1318 38.2
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 1.2e-200 704.9 1261 38.6
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 3.2e-198 696.8 1295 36.8
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 1.0e-196 691.8 1325 36.8
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 1.3e-191 674.9 1240 36.9
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 5.0e-191 672.9 1280 36.0
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 4.2e-190 669.8 1281 37.2
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 5.9e-184 649.4 1059 39.1
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 3.1e-177 627.1 1167 38.4
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 1.6e-176 624.8 1031 39.9
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 1.7e-175 621.3 1265 34.9
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 3.6e-173 613.6 711 50.8
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 3.6e-173 613.6 694 51.0
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 1.0e-172 612.1 1248 35.4
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 2.1e-165 587.8 1061 37.0
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 2.7e-165 587.4 1251 34.8
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 8.8e-164 582.4 1223 35.6
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 4.1e-161 573.5 1236 34.1
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 1.0e-156 558.9 683 49.6
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 1.5e-150 538.5 695 45.6
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 1.5e-150 538.5 1104 34.8
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 5.4e-137 493.4 753 41.7
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 4.9e-130 470.3 876 37.6
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 1.1e-124 452.6 707 42.3
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 2.6e-123 448.0 647 41.1
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 4.4e-123 447.2 635 42.5
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.4e-121 442.2 571 44.3
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 1.3e-111 409.1 710 40.6
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 1.9e-102 378.6 703 35.1
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 2.1e-96 358.6 669 38.3
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 4.0e-92 344.4 341 53.4
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 1.4e-89 335.9 697 35.9
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 4.6e-88 330.9 670 37.2
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 8.2e-85 320.1 811 30.2
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 1.4e-76 292.7 840 29.2
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 4.1e-60 238.0 891 28.2
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 5.3e-60 237.7 407 36.6
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 2.0e-59 235.7 929 26.0
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 1.2e-40 173.3 291 38.5
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 2.0e-38 166.0 558 31.7
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 4.9e-37 161.4 273 38.8
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 7.5e-30 137.5 521 30.1
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 3.6e-24 118.6 451 25.7
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 4.7e-24 118.2 262 27.9
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 1.1e-23 117.1 377 26.0
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 6.8e-23 114.4 116 52.6
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 2.2e-21 109.4 293 36.2
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 2.2e-21 109.4 293 36.2
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 3.9e-18 98.6 497 27.0
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 5.1e-18 98.2 497 27.0
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 2.8e-16 92.4 217 31.8
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 4.7e-16 91.7 491 27.9
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 4.7e-16 91.7 491 27.9
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 4.7e-16 91.7 454 27.1
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 6.2e-16 91.3 496 27.8
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 6.2e-16 91.3 143 36.4
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 1.4e-15 90.1 541 26.8
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 1.8e-15 89.7 534 25.3
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 7.5e-14 84.3 506 25.9
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 1.1e-12 80.5 443 23.3
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 4.1e-12 78.6 266 27.1
TPR.G19009 Trifolium pratense HOM05D006144 ORTHO05D006357 9.2e-12 77.4 105 34.3
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 1.7e-10 73.2 506 25.5
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 1.7e-10 73.2 514 23.0
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 4.3e-09 68.6 80 46.2
Medtr8g079870 Medicago truncatula HOM05D006144 ORTHO05D006357 1.8e-07 63.2 99 40.4
SEGI_01818 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 7.6e-06 57.8 92 39.1


User provided reference genes

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