Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 1.3e-290 1002.3 500 100.0
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 4.0e-218 761.5 449 85.7
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 1.2e-214 750.0 454 84.8
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 1.5e-209 733.0 454 82.4
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 1.7e-168 596.7 464 66.4
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 1.1e-167 594.0 458 67.0
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 9.3e-167 590.9 464 65.7
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 1.2e-166 590.5 453 68.0
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 1.2e-166 590.5 464 65.9
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 2.1e-166 589.7 453 67.5
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 3.3e-164 582.4 464 64.7
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 1.8e-162 576.6 464 65.5
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 4.0e-162 575.5 459 65.6
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 5.8e-161 571.6 464 63.6
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 9.9e-161 570.9 464 63.8
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 1.4e-159 567.0 463 62.9
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 2.4e-159 566.2 460 64.3
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 3.3e-156 555.8 463 62.2
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 1.3e-155 553.9 465 61.9
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 4.8e-155 552.0 463 62.0
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 1.8e-154 550.1 467 60.2
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 2.4e-154 549.7 463 61.8
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 2.4e-154 549.7 470 60.2
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 6.9e-154 548.1 463 62.0
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 2.0e-153 546.6 463 61.6
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 2.2e-152 543.1 469 61.6
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 2.9e-152 542.7 461 61.0
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 6.4e-152 541.6 463 60.3
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 8.4e-152 541.2 463 60.5
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 1.1e-151 540.8 465 60.4
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 1.1e-151 540.8 463 62.2
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 1.4e-151 540.4 464 60.1
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 4.2e-151 538.9 469 59.3
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 1.3e-149 533.9 462 59.5
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 2.3e-149 533.1 459 62.3
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 3.0e-149 532.7 464 60.6
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 3.0e-149 532.7 485 57.3
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 3.0e-149 532.7 469 58.8
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 8.7e-149 531.2 463 59.6
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 1.9e-148 530.0 463 59.4
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 2.5e-148 529.6 456 60.7
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 2.5e-148 529.6 465 60.2
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 3.3e-148 529.3 464 59.9
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 3.3e-148 529.3 464 59.5
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 5.7e-148 528.5 469 58.4
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 1.3e-147 527.3 464 56.7
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 1.3e-147 527.3 487 56.9
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 1.3e-147 527.3 460 59.1
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 2.8e-147 526.2 460 59.8
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 4.8e-147 525.4 464 57.5
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 8.2e-147 524.6 461 59.7
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 1.1e-146 524.2 469 59.1
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 3.1e-146 522.7 466 58.8
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 6.9e-146 521.5 493 55.6
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 9.0e-146 521.2 456 60.7
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 9.0e-146 521.2 464 58.4
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 2.0e-145 520.0 464 58.8
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 1.3e-144 517.3 464 56.7
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 1.3e-144 517.3 464 56.7
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 1.3e-144 517.3 464 56.7
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 1.7e-144 516.9 464 56.7
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 1.7e-144 516.9 464 56.5
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 2.2e-144 516.5 464 56.7
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 2.2e-144 516.5 464 56.7
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 8.4e-144 514.6 461 56.8
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 2.5e-143 513.1 463 57.5
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 3.2e-143 512.7 419 62.8
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 3.2e-143 512.7 469 57.4
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 5.5e-143 511.9 464 56.0
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 5.5e-143 511.9 464 56.5
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 7.1e-143 511.5 464 56.2
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 9.3e-143 511.1 471 56.3
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 1.6e-142 510.4 465 56.1
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 2.1e-142 510.0 464 56.2
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 6.1e-142 508.4 459 59.7
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 3.0e-141 506.1 469 56.7
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 1.5e-140 503.8 469 56.7
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 7.4e-140 501.5 466 57.5
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 7.9e-134 481.5 467 53.3
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 8.8e-133 478.0 463 53.8
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 1.5e-132 477.2 480 53.5
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 4.3e-132 475.7 387 63.6
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 5.7e-132 475.3 465 55.3
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 3.7e-131 472.6 471 54.4
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 2.0e-129 466.8 461 54.4
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 5.1e-125 452.2 452 53.8
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 1.5e-121 440.7 414 56.0
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 2.2e-120 436.8 465 49.9
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 7.5e-108 395.2 475 48.6
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 8.5e-104 381.7 473 46.1
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 4.2e-103 379.4 477 44.0
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 8.0e-102 375.2 341 56.0
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 8.8e-101 371.7 467 45.6
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 2.0e-92 344.0 479 40.5
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 7.8e-65 252.3 273 47.6
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 2.6e-60 237.3 240 50.8
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 4.0e-45 186.8 151 65.6
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 3.5e-41 173.7 146 60.3
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 4.6e-41 173.3 147 59.9
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 4.6e-41 173.3 146 60.3
Duzib147G0073 Durio zibethinus HOM05D004524 ORTHO05D005477 2.7e-33 147.5 128 60.9
HPP92_018740 Vanilla planifolia HOM05D004524 ORTHO05D005477 3.9e-24 117.1 331 28.1
Migut.H00498 Erythranthe guttata HOM05D004524 ORTHO05D005477 3.3e-23 114.0 73 72.6
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 5.5e-18 96.7 97 50.5
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.4e-16 92.0 103 46.6
Cpa.g.sc15.77 Carica papaya HOM05D004524 ORTHO05D005477 2.3e-16 91.3 106 45.3
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 3.0e-16 90.9 61 75.4
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 3.0e-08 64.3 42 66.7
Lsat_1_v5_gn_8_103301 Lactuca sativa HOM05D004524 ORTHO05D005477 5.1e-08 63.5 62 45.2
Glyma.02G061902 Glycine max HOM05D004524 ORTHO05D005477 7.4e-07 59.7 35 80.0


User provided reference genes

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