Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G016050 Citrullus lanatus HOM05D008407 ORTHO05D008048 7.2e-72 273.9 143 100.0
CsaV3_6G042330 Cucumis sativus L. HOM05D008407 ORTHO05D008048 2.7e-42 175.6 145 69.7
MELO3C007475.2 Cucumis melo HOM05D008407 ORTHO05D008048 4.7e-39 164.9 145 66.9
Sed0000570 Sechium edule HOM05D008407 ORTHO05D008048 1.1e-35 153.7 150 60.0
TWI79G0560 Tripterygium wilfordii HOM05D008407 ORTHO05D008048 1.9e-19 99.8 147 41.5
Lj4g0011503 Lotus japonicus HOM05D008407 ORTHO05D008048 2.1e-18 96.3 139 41.7
PGR102G1446 Punica granatum HOM05D008407 ORTHO05D008048 3.5e-18 95.5 110 40.0
Duzib147G1678 Durio zibethinus HOM05D008407 ORTHO05D008048 2.3e-17 92.8 141 43.3
TPR.G2192 Trifolium pratense HOM05D008407 ORTHO05D008048 2.3e-17 92.8 134 40.3
QL06p031965 Quercus lobata HOM05D008407 ORTHO05D008048 3.9e-17 92.0 110 46.4
FvH4_1g22760 Fragaria vesca HOM05D008407 ORTHO05D008048 5.6e-16 88.2 123 39.8
FAN19G0490 Fragaria x ananassa HOM05D008407 ORTHO05D008048 5.6e-16 88.2 123 39.8
FAN26G1845 Fragaria x ananassa HOM05D008407 ORTHO05D008048 5.6e-16 88.2 123 39.8
Manes.13G079700 Manihot esculenta HOM05D008407 ORTHO05D008048 9.5e-16 87.4 138 41.3
Psat7g050960 Pisum sativum HOM05D008407 ORTHO05D008048 9.5e-16 87.4 115 47.8
FAN28G0580 Fragaria x ananassa HOM05D008407 ORTHO05D008048 1.2e-15 87.0 123 39.0
FAN23G0665 Fragaria x ananassa HOM05D008407 ORTHO05D008048 2.1e-15 86.3 123 39.0
Gohir.A02G135700 Gossypium hirsutum HOM05D008407 ORTHO05D008048 2.1e-15 86.3 148 37.2
CiPaw.03G133800 Carya illinoinensis HOM05D008407 ORTHO05D008048 2.8e-15 85.9 108 43.5
Haze_25053 Corylus avellana HOM05D008407 ORTHO05D008048 4.7e-15 85.1 118 41.5
Medtr8g091950 Medicago truncatula HOM05D008407 ORTHO05D008048 8.1e-15 84.3 80 50.0
Dinv19478 Davidia involucrata HOM05D008407 ORTHO05D008048 1.1e-14 84.0 152 40.1
RcHm_v2.0_Chr2g0117081 Rosa chinensis HOM05D008407 ORTHO05D008048 1.1e-14 84.0 132 37.1
Sabra05G0069800 Salix brachista HOM05D008407 ORTHO05D008048 1.4e-14 83.6 145 38.6
Haze_25045 Corylus avellana HOM05D008407 ORTHO05D008048 5.2e-14 81.6 111 40.5
Prupe.6G170400 Prunus persica HOM05D008407 ORTHO05D008048 4.4e-13 78.6 121 38.0
Cpa.g.sc145.13 Carica papaya HOM05D008407 ORTHO05D008048 9.9e-13 77.4 135 41.5
Glyma.05G184300 Glycine max HOM05D008407 ORTHO05D008048 2.9e-12 75.9 104 40.4
MD01G1020600 Malus domestica HOM05D008407 ORTHO05D008048 6.4e-12 74.7 133 35.3
arahy.Tifrunner.gnm1.ann1.IW8T8H Arachis hypogaea HOM05D004317 ORTHO05D005031 8.3e-12 74.3 78 41.0
COL.COLO4_03583 Corchorus olitorius HOM05D008407 ORTHO05D008048 1.1e-11 73.9 138 34.8
Hma1.2p1_0375F.1_g138780 Hydrangea macrophylla HOM05D008407 ORTHO05D008048 3.2e-11 72.4 105 43.8
Gohir.A11G053700 Gossypium hirsutum HOM05D008407 ORTHO05D008048 4.1e-11 72.0 154 33.8
arahy.Tifrunner.gnm1.ann1.80DI5I Arachis hypogaea HOM05D008407 ORTHO05D008048 9.2e-11 70.9 78 39.7
Duzib187G2009 Durio zibethinus HOM05D008407 ORTHO05D008048 2.1e-10 69.7 141 34.0
Gohir.D03G046566 Gossypium hirsutum HOM05D008407 ORTHO05D008048 2.1e-10 69.7 148 33.1
Gorai.003G047700 Gossypium raimondii HOM05D008407 ORTHO05D008048 2.1e-10 69.7 148 33.1
Lalb_Chr07g0184781 Lupinus albus HOM05D008407 ORTHO05D008048 2.1e-10 69.7 151 30.5
PGSC0003DMG400031207 Solanum tuberosum HOM05D017188 ORTHO05D008048 3.5e-10 68.9 112 36.6
arahy.Tifrunner.gnm1.ann1.FI1JAT Arachis hypogaea HOM05D008407 ORTHO05D008048 1.0e-09 67.4 126 35.7
Manes.14G007700 Manihot esculenta HOM05D009551 ORTHO05D008048 1.3e-09 67.0 95 41.1
Carub.0008s2565 Capsella rubella HOM05D011184 ORTHO05D008048 1.7e-09 66.6 137 35.0
Phvul.002G265200 Phaseolus vulgaris HOM05D008407 ORTHO05D008048 1.7e-09 66.6 108 36.1
arahy.Tifrunner.gnm1.ann1.18RYE7 Arachis hypogaea HOM05D008407 ORTHO05D008048 3.0e-09 65.9 126 35.7
Gorai.007G244900 Gossypium raimondii HOM05D008407 ORTHO05D008048 3.0e-09 65.9 82 42.7
Nitab4.5_0004977g0060 Nicotiana tabacum HOM05D017188 ORTHO05D008048 3.0e-09 65.9 73 45.2
BcaC07g41453 Brassica carinata HOM05D009551 ORTHO05D008048 5.1e-09 65.1 81 44.4
CANSAT01G0822 Cannabis sativa HOM05D008407 ORTHO05D008048 5.1e-09 65.1 70 47.1
Gohir.A11G197700 Gossypium hirsutum HOM05D008407 ORTHO05D008048 5.1e-09 65.1 82 41.5
Gohir.D11G231800 Gossypium hirsutum HOM05D008407 ORTHO05D008048 6.6e-09 64.7 82 41.5
Medtr4g005500 Medicago truncatula HOM05D014935 ORTHO05D008048 1.1e-08 63.9 143 31.5
Potri.005G085000 Populus trichocarpa HOM05D008407 ORTHO05D008048 1.1e-08 63.9 115 33.0
A06p12760 Brassica napus HOM05D009551 ORTHO05D008048 2.5e-08 62.8 82 41.5
BraA06t24436Z Brassica rapa HOM05D009551 ORTHO05D008048 2.5e-08 62.8 82 41.5
Thecc.01G114300 Theobroma cacao HOM05D008407 ORTHO05D008048 2.5e-08 62.8 116 37.1
A09p60720 Brassica napus HOM05D009551 ORTHO05D008048 3.3e-08 62.4 81 43.2
Nitab4.5_0002354g0030 Nicotiana tabacum HOM05D006700 ORTHO05D008196 3.3e-08 62.4 101 39.6
BcaC05g25541 Brassica carinata HOM05D009551 ORTHO05D008048 4.3e-08 62.0 120 33.3
C05p15070 Brassica napus HOM05D009551 ORTHO05D008048 4.3e-08 62.0 120 33.3
C08p44220 Brassica napus HOM05D009551 ORTHO05D008048 4.3e-08 62.0 81 43.2
BolC5t30222H Brassica oleracea HOM05D009551 ORTHO05D008048 4.3e-08 62.0 120 33.3
BolC8t51968H Brassica oleracea HOM05D009551 ORTHO05D008048 4.3e-08 62.0 81 43.2
BcaC01g02716 Brassica carinata HOM05D006130 ORTHO05D007491 5.6e-08 61.6 100 38.0
C03p61340 Brassica napus HOM05D011184 ORTHO05D008048 5.6e-08 61.6 100 38.0
CARHR278830 Cardamine hirsuta HOM05D011184 ORTHO05D008048 7.3e-08 61.2 100 38.0
BcaC07g41387 Brassica carinata HOM05D009551 ORTHO05D008048 1.2e-07 60.5 108 38.0
COL.COLO4_11001 Corchorus olitorius HOM05D008407 ORTHO05D008048 1.2e-07 60.5 138 31.2
Potri.010G252700 Populus trichocarpa HOM05D009551 ORTHO05D008048 1.2e-07 60.5 151 32.5
THA.LOC104799297 Tarenaya hassleriana HOM05D011184 ORTHO05D008048 1.2e-07 60.5 125 35.2
BcaB02g06671 Brassica carinata HOM05D009551 ORTHO05D008048 1.6e-07 60.1 82 40.2
Thhalv10008985m.g Eutrema salsugineum HOM05D009551 ORTHO05D008048 2.1e-07 59.7 122 33.6
BolC3t18394H Brassica oleracea HOM05D011184 ORTHO05D008048 2.8e-07 59.3 100 37.0
Sp2g27900 Schrenkiella parvula HOM05D011184 ORTHO05D008048 2.8e-07 59.3 100 36.0
BraA06t26099Z Brassica rapa HOM05D006130 ORTHO05D007491 3.6e-07 58.9 102 38.2
BcaB02g09833 Brassica carinata HOM05D011184 ORTHO05D008048 4.7e-07 58.5 119 34.5
Nitab4.5_0000818g0160 Nicotiana tabacum HOM05D017188 ORTHO05D008048 6.2e-07 58.2 103 35.9
A06p31620 Brassica napus HOM05D011184 ORTHO05D008048 8.1e-07 57.8 102 39.2
TPR.G38723 Trifolium pratense HOM05D014935 ORTHO05D008048 8.1e-07 57.8 93 38.7
Prupe.3G021100 Prunus persica HOM05D019125 ORTHO05D022577 1.1e-06 57.4 116 33.6
GSVIVG01022243001 Vitis vinifera HOM05D008407 ORTHO05D008048 1.1e-06 57.4 71 43.7
Lj3g0024474 Lotus japonicus HOM05D014935 ORTHO05D008048 1.4e-06 57.0 144 29.9
Ciclev10026701m.g Citrus clementina HOM05D008407 ORTHO05D008048 1.8e-06 56.6 141 31.2
Cfa002761 Carpinus fangiana HOM05D008407 ORTHO05D008048 2.4e-06 56.2 111 32.4
Solyc06g063300.4 Solanum lycopersicum HOM05D006700 ORTHO05D008196 2.4e-06 56.2 99 42.4
AT5G64820 Arabidopsis thaliana HOM05D011184 ORTHO05D008048 3.1e-06 55.8 135 28.1
Sopen06g022770 Solanum pennellii HOM05D009551 ORTHO05D008048 3.1e-06 55.8 99 42.4
PGSC0003DMG400026512 Solanum tuberosum HOM05D009551 ORTHO05D008048 3.1e-06 55.8 99 42.4
Peaxi162Scf00106g01716 Petunia axillaris HOM05D017188 ORTHO05D008048 4.0e-06 55.5 88 34.1
Glyma.08G142200 Glycine max HOM05D008407 ORTHO05D008048 5.2e-06 55.1 76 47.4
Nitab4.5_0003757g0050 Nicotiana tabacum HOM05D006700 ORTHO05D008196 5.2e-06 55.1 81 42.0
Nitab4.5_0004378g0030 Nicotiana tabacum HOM05D017188 ORTHO05D008048 5.2e-06 55.1 104 34.6
TWI12G0637 Tripterygium wilfordii HOM05D009551 ORTHO05D008048 5.2e-06 55.1 97 35.1


User provided reference genes

Program Settings