Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G014820 Citrullus lanatus HOM05D006487 ORTHO05D007982 6.8e-145 517.3 260 100.0
CsaV3_1G007510 Cucumis sativus L. HOM05D006487 ORTHO05D007982 3.4e-120 435.3 251 87.6
MELO3C002168.2 Cucumis melo HOM05D006487 ORTHO05D007982 6.0e-117 424.5 263 82.5
Sed0005317 Sechium edule HOM05D006487 ORTHO05D007982 3.0e-108 395.6 251 79.7
Haze_18332 Corylus avellana HOM05D006487 ORTHO05D007982 5.5e-86 321.6 252 66.7
TWI81G0553 Tripterygium wilfordii HOM05D006487 ORTHO05D007982 1.3e-82 310.5 250 65.6
Dinv03426 Davidia involucrata HOM05D006487 ORTHO05D007982 4.8e-82 308.5 250 64.4
Thecc.05G197400 Theobroma cacao HOM05D006487 ORTHO05D007982 1.1e-81 307.4 252 64.7
Prupe.5G243800 Prunus persica HOM05D006487 ORTHO05D007982 9.0e-81 304.3 250 64.0
Lj2g0009690 Lotus japonicus HOM05D006487 ORTHO05D007982 2.0e-80 303.1 257 62.6
Actinidia34682 Actinidia chinensis HOM05D006487 ORTHO05D007982 4.5e-80 302.0 250 63.2
CANSAT64G1132 Cannabis sativa HOM05D006487 ORTHO05D007982 5.8e-80 301.6 242 64.5
Gohir.A08G225300 Gossypium hirsutum HOM05D006487 ORTHO05D007982 1.9e-78 296.6 252 61.9
MD14G1245900 Malus domestica HOM05D006487 ORTHO05D007982 1.9e-78 296.6 255 63.1
Rhsim08G0124800 Rhododendron simsii HOM05D006487 ORTHO05D007982 1.9e-78 296.6 254 62.6
TAR629G0717 Trochodendron aralioides HOM05D006487 ORTHO05D007982 2.5e-78 296.2 256 62.5
COL.COLO4_24904 Corchorus olitorius HOM05D006487 ORTHO05D007982 7.1e-78 294.7 252 61.1
Glyma.16G213000 Glycine max HOM05D006487 ORTHO05D007982 7.1e-78 294.7 254 60.6
Hma1.2p1_0989F.1_g244820 Hydrangea macrophylla HOM05D006487 ORTHO05D007982 9.3e-78 294.3 250 62.4
Oeu023551.1 Olea europaea HOM05D006487 ORTHO05D007982 1.2e-77 293.9 244 62.3
Phvul.004G139000 Phaseolus vulgaris HOM05D006487 ORTHO05D007982 1.2e-77 293.9 251 61.4
Glyma.09G164600 Glycine max HOM05D006487 ORTHO05D007982 3.5e-77 292.4 252 60.3
VMungo0464G1082 Vigna mungo HOM05D006487 ORTHO05D007982 6.0e-77 291.6 251 61.0
GSVIVG01027119001 Vitis vinifera HOM05D006487 ORTHO05D007982 1.3e-76 290.4 244 62.7
Cpa.g.sc168.16 Carica papaya HOM05D006487 ORTHO05D007982 3.0e-76 289.3 250 62.0
PGR083G2465 Punica granatum HOM05D006487 ORTHO05D007982 3.0e-76 289.3 233 61.8
Gorai.004G262200 Gossypium raimondii HOM05D006487 ORTHO05D007982 3.9e-76 288.9 252 60.3
RcHm_v2.0_Chr7g0177071 Rosa chinensis HOM05D006487 ORTHO05D007982 1.5e-75 287.0 250 60.4
Nn4g25081 Nelumbo nucifera HOM05D006487 ORTHO05D007982 2.5e-75 286.2 254 61.4
Lalb_Chr22g0353991 Lupinus albus HOM05D006487 ORTHO05D007982 3.3e-75 285.8 251 60.2
Nitab4.5_0003040g0090 Nicotiana tabacum HOM05D006487 ORTHO05D007982 3.3e-75 285.8 251 59.8
Gohir.D08G245700 Gossypium hirsutum HOM05D006487 ORTHO05D007982 4.3e-75 285.4 252 59.5
Manes.02G218400 Manihot esculenta HOM05D006487 ORTHO05D007982 5.7e-75 285.0 262 58.0
Sopen03g029330 Solanum pennellii HOM05D006487 ORTHO05D007982 7.4e-75 284.6 251 60.6
FvH4_5g18410 Fragaria vesca HOM05D006487 ORTHO05D007982 1.3e-74 283.9 250 58.8
Solyc03g098620.3 Solanum lycopersicum HOM05D006487 ORTHO05D007982 1.6e-74 283.5 251 60.2
MBI06_g27513_MAGBIO Magnolia biondii HOM05D006487 ORTHO05D007982 2.1e-74 283.1 249 58.2
Ciclev10020398m.g Citrus clementina HOM05D006487 ORTHO05D007982 3.7e-74 282.3 247 59.9
Medtr6g077860 Medicago truncatula HOM05D006487 ORTHO05D007982 3.7e-74 282.3 253 59.7
Psat1g121120 Pisum sativum HOM05D006487 ORTHO05D007982 4.8e-74 282.0 250 60.0
PSO063G4419 Papaver somniferum HOM05D006487 ORTHO05D007982 6.3e-74 281.6 233 60.1
Nitab4.5_0000782g0060 Nicotiana tabacum HOM05D006487 ORTHO05D007982 1.1e-73 280.8 249 60.2
Ca_11836_v3 Cicer arietinum L. HOM05D006487 ORTHO05D007982 1.4e-73 280.4 254 59.8
FAN13G0937 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.4e-73 280.4 255 59.2
FAN18G0592 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.4e-73 280.4 250 57.2
PGSC0003DMG400010175 Solanum tuberosum HOM05D006487 ORTHO05D007982 5.3e-73 278.5 251 59.4
Eucgr.H00648 Eucalyptus grandis HOM05D006487 ORTHO05D007982 9.0e-73 277.7 186 72.6
Potri.004G069400 Populus trichocarpa HOM05D006487 ORTHO05D007982 1.2e-72 277.3 247 59.9
Lsat_1_v5_gn_0_10541 Lactuca sativa HOM05D006487 ORTHO05D007982 1.5e-72 276.9 251 57.4
CAN.G929.21 Capsicum annuum HOM05D006487 ORTHO05D007982 2.0e-72 276.6 251 58.6
arahy.Tifrunner.gnm1.ann1.FG107U Arachis hypogaea HOM05D006487 ORTHO05D007982 3.4e-72 275.8 257 60.3
FAN08G3399 Fragaria x ananassa HOM05D006487 ORTHO05D007982 4.5e-72 275.4 270 57.4
MSTRG.23212 Avicennia marina HOM05D006487 ORTHO05D007982 7.6e-72 274.6 252 57.9
Aqoxy3G04297 Aquilegia oxysepala HOM05D006487 ORTHO05D007982 1.3e-71 273.9 231 61.5
SGA_v2.0_scaffold90G27746 Striga asiatica HOM05D006487 ORTHO05D007982 1.3e-71 273.9 244 58.2
Migut.O00267 Erythranthe guttata HOM05D006487 ORTHO05D007982 1.7e-71 273.5 252 57.5
SalBow5G2999 Salvia bowleyana HOM05D006487 ORTHO05D007982 2.9e-71 272.7 236 59.7
AL1G54980 Arabidopsis lyrata HOM05D006487 ORTHO05D007982 3.8e-71 272.3 249 58.2
QL10p034099 Quercus lobata HOM05D006487 ORTHO05D007982 3.8e-71 272.3 242 59.5
Atru.chr9.84 Acer truncatum HOM05D006487 ORTHO05D007982 5.0e-71 271.9 251 57.0
Carub.0001s3750 Capsella rubella HOM05D006487 ORTHO05D007982 5.0e-71 271.9 249 57.0
PSO782G2052 Papaver somniferum HOM05D006487 ORTHO05D007982 5.0e-71 271.9 244 57.0
BcaB04g17434 Brassica carinata HOM05D006487 ORTHO05D007982 1.1e-70 270.8 247 56.7
arahy.Tifrunner.gnm1.ann1.49K0I5 Arachis hypogaea HOM05D006487 ORTHO05D007982 1.4e-70 270.4 257 59.1
Sp1g35330 Schrenkiella parvula HOM05D006487 ORTHO05D007982 1.4e-70 270.4 251 56.2
A08p04750 Brassica napus HOM05D006487 ORTHO05D007982 1.9e-70 270.0 259 56.8
BraA08t32504Z Brassica rapa HOM05D006487 ORTHO05D007982 1.9e-70 270.0 259 56.8
AUR62033020 Chenopodium quinoa HOM05D006487 ORTHO05D007982 1.9e-70 270.0 237 59.5
DCAR_011682 Daucus carota HOM05D006487 ORTHO05D007982 3.2e-70 269.2 253 57.7
Prupe.4G244900 Prunus persica HOM05D006487 ORTHO05D007982 5.5e-70 268.5 250 60.0
AUR62040775 Chenopodium quinoa HOM05D006487 ORTHO05D007982 1.6e-69 266.9 227 61.2
AT1G48380 Arabidopsis thaliana HOM05D006487 ORTHO05D007982 6.1e-69 265.0 260 55.0
HanXRQChr15g0492111 Helianthus annuus HOM05D006487 ORTHO05D007982 1.0e-68 264.2 255 56.9
CARHR037990 Cardamine hirsuta HOM05D006487 ORTHO05D007982 6.7e-68 261.5 254 56.3
Peaxi162Scf00171g00242 Petunia axillaris HOM05D006487 ORTHO05D007982 1.1e-67 260.8 203 65.5
Cc04_g08450 Coffea canephora HOM05D006487 ORTHO05D007982 3.3e-67 259.2 182 70.3
Thhalv10011620m.g Eutrema salsugineum HOM05D006487 ORTHO05D007982 1.3e-66 257.3 237 57.0
vmacro17744 Vaccinium macrocarpon HOM05D006487 ORTHO05D007982 1.3e-66 257.3 328 47.0
BolC8t47322H Brassica oleracea HOM05D006487 ORTHO05D007982 4.8e-66 255.4 255 54.5
Sabra04G0046600 Salix brachista HOM05D006487 ORTHO05D007982 1.1e-65 254.2 253 56.5
Sc07g0007560 Simmondsia chinensis HOM05D006487 ORTHO05D007982 4.1e-65 252.3 238 55.9
BcaC07g37138 Brassica carinata HOM05D006487 ORTHO05D007982 5.3e-65 251.9 256 54.3
C08p05120 Brassica napus HOM05D006487 ORTHO05D007982 2.0e-64 250.0 258 53.5
HPP92_014774 Vanilla planifolia HOM05D006487 ORTHO05D007982 2.6e-64 249.6 247 51.8
CDE04G1004 Ceratophyllum demersum HOM05D006487 ORTHO05D007982 1.3e-63 247.3 185 65.9
ATR0618G270 Amborella trichopoda HOM05D006487 ORTHO05D007982 1.9e-62 243.4 253 52.2
THA.LOC104820327 Tarenaya hassleriana HOM05D006487 ORTHO05D007982 2.1e-61 240.0 228 57.0
EL10Ac8g19478 Beta vulgaris HOM05D006487 ORTHO05D007982 3.9e-60 235.7 325 44.6
SEGI_16734 Sequoiadendron giganteum HOM05D006487 ORTHO05D007982 1.7e-58 230.3 166 63.3
Os07g0172200 Oryza sativa ssp. japonica HOM05D006487 ORTHO05D007982 6.9e-57 224.9 239 51.9
Hund22367 Selenicereus undatus HOM05D006487 ORTHO05D007982 6.9e-57 224.9 253 51.8
TAR629G1006 Trochodendron aralioides HOM05D006487 ORTHO05D007982 1.7e-55 220.3 145 73.1
Zm00001eb271770 Zea mays HOM05D006487 ORTHO05D007982 1.7e-55 220.3 254 49.6
TPR.G19888 Trifolium pratense HOM05D006487 ORTHO05D007982 2.2e-55 219.9 177 64.4
FAN04G2664 Fragaria x ananassa HOM05D006487 ORTHO05D007982 6.5e-55 218.4 262 50.4
Mapoly0080s0074 Marchantia polymorpha HOM05D006487 ORTHO05D007982 4.7e-53 212.2 245 46.1
Lj9A412T44 Lonicera japonica HOM05D006487 ORTHO05D007982 5.7e-51 205.3 222 53.2
SMO117G0078 Selaginella moellendorffii HOM05D006487 ORTHO05D007982 5.7e-51 205.3 186 54.8
FAN09G4505 Fragaria x ananassa HOM05D006487 ORTHO05D007982 1.8e-49 200.3 121 76.9
Pp3c25_9140 Physcomitrium patens HOM05D006487 ORTHO05D007982 7.0e-49 198.4 162 56.2
Pp3c5_25480 Physcomitrium patens HOM05D006487 ORTHO05D007982 9.1e-49 198.0 162 56.2
AagrBONN_evm.TU.Sc2ySwM_228.567 Anthoceros agrestis HOM05D006487 ORTHO05D007982 4.5e-48 195.7 231 43.7
FAN09G0815 Fragaria x ananassa HOM05D006487 ORTHO05D007982 2.5e-46 189.9 122 74.6
Cfa017861 Carpinus fangiana HOM05D006487 ORTHO05D007982 8.5e-39 164.9 141 61.7
Hma1.2p1_0989F.1_g244830 Hydrangea macrophylla HOM05D006487 ORTHO05D007982 4.7e-37 159.1 141 59.6
CiPaw.16G073400 Carya illinoinensis HOM05D006487 ORTHO05D007982 1.5e-35 154.1 141 57.4
Aa31LG10G5380 Aethionema arabicum HOM05D006487 ORTHO05D007982 1.3e-34 151.0 150 53.3
Os06g0730200 Oryza sativa ssp. japonica HOM05D006487 ORTHO05D007982 1.1e-30 137.9 117 61.5
Prupe.2G315400 Prunus persica HOM05D006487 ORTHO05D007982 5.5e-30 135.6 191 43.5
Cre13.g576500 Chlamydomonas reinhardtii HOM05D006487 ORTHO05D007982 8.9e-28 128.3 168 40.5
TPR.G27400 Trifolium pratense HOM05D006487 ORTHO05D007982 5.9e-24 115.5 98 63.3
Ah.14g085790 Amaranthus hybridus HOM05D006487 ORTHO05D007982 6.1e-21 105.5 77 66.2
PRCOL_00006754 Prasinoderma coloniale HOM05D006487 ORTHO05D007982 3.7e-18 96.3 201 32.3
CBR_g34174 Chara braunii HOM05D006487 ORTHO05D007982 4.9e-18 95.9 257 27.2
MCO12G143 Micromonas commoda HOM05D006487 ORTHO05D007982 2.4e-17 93.6 174 36.2
Ca_30285_v3 Cicer arietinum L. HOM05D006487 ORTHO05D007982 1.2e-13 81.3 107 46.7
CSS0035874 Camellia sinensis var. sinensis HOM05D006487 ORTHO05D007982 1.7e-10 70.9 97 45.4


User provided reference genes

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