Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G014370 Citrullus lanatus HOM05D005796 ORTHO05D007054 2.0e-144 515.8 262 100.0
CsaV3_1G007940 Cucumis sativus L. HOM05D005796 ORTHO05D007054 8.4e-119 430.6 266 84.2
MELO3C002210.2 Cucumis melo HOM05D005796 ORTHO05D007054 1.3e-116 423.3 266 83.8
Sed0020047 Sechium edule HOM05D005796 ORTHO05D007054 1.3e-100 370.2 264 76.9
Ciclev10021819m.g Citrus clementina HOM05D005796 ORTHO05D007054 3.7e-74 282.3 238 64.3
Solyc03g113280.3 Solanum lycopersicum HOM05D005796 ORTHO05D007054 4.8e-74 282.0 240 66.2
GSVIVG01008066001 Vitis vinifera HOM05D005796 ORTHO05D007054 1.4e-73 280.4 217 71.4
TAR481G0014 Trochodendron aralioides HOM05D005796 ORTHO05D007054 1.8e-73 280.0 181 77.9
TWI60G1143 Tripterygium wilfordii HOM05D005796 ORTHO05D007054 2.4e-73 279.6 206 71.4
Prupe.5G185800 Prunus persica HOM05D005796 ORTHO05D007054 4.1e-73 278.9 255 62.7
AUR62008352 Chenopodium quinoa HOM05D005796 ORTHO05D007054 9.1e-73 277.7 177 78.5
Nitab4.5_0005402g0010 Nicotiana tabacum HOM05D005796 ORTHO05D007054 1.2e-72 277.3 208 68.3
Nitab4.5_0004605g0110 Nicotiana tabacum HOM05D005796 ORTHO05D007054 1.6e-72 276.9 220 66.4
Dinv38663 Davidia involucrata HOM05D005796 ORTHO05D007054 2.0e-72 276.6 192 71.9
Actinidia04922 Actinidia chinensis HOM05D005796 ORTHO05D007054 1.0e-71 274.2 193 71.0
Peaxi162Scf00009g00426 Petunia axillaris HOM05D005796 ORTHO05D007054 1.0e-71 274.2 171 78.4
Thecc.03G078500 Theobroma cacao HOM05D005796 ORTHO05D007054 1.0e-71 274.2 200 72.0
CANSAT80G0862 Cannabis sativa HOM05D005796 ORTHO05D007054 1.3e-71 273.9 266 58.6
CiPaw.11G037800 Carya illinoinensis HOM05D005796 ORTHO05D007054 1.7e-71 273.5 239 65.3
PGSC0003DMG400025332 Solanum tuberosum HOM05D005796 ORTHO05D007054 1.7e-71 273.5 242 63.6
Atru.chr9.2321 Acer truncatum HOM05D005796 ORTHO05D007054 2.9e-71 272.7 195 72.8
EL10Ac5g10940 Beta vulgaris HOM05D005796 ORTHO05D007054 2.9e-71 272.7 180 76.7
Duzib084G0674 Durio zibethinus HOM05D005796 ORTHO05D007054 3.8e-71 272.3 178 74.7
Sopen03g032340 Solanum pennellii HOM05D005796 ORTHO05D007054 8.5e-71 271.2 240 64.2
RcHm_v2.0_Chr7g0180561 Rosa chinensis HOM05D005796 ORTHO05D007054 1.5e-70 270.4 263 57.8
arahy.Tifrunner.gnm1.ann1.U2VSD4 Arachis hypogaea HOM05D005796 ORTHO05D007054 2.5e-70 269.6 237 62.9
arahy.Tifrunner.gnm1.ann1.NXA9BP Arachis hypogaea HOM05D005796 ORTHO05D007054 4.2e-70 268.9 237 62.0
Manes.14G074300 Manihot esculenta HOM05D005796 ORTHO05D007054 4.2e-70 268.9 204 66.7
MD14G1193900 Malus domestica HOM05D005796 ORTHO05D007054 7.2e-70 268.1 178 76.4
Hma1.2p1_0002F.1_g003270 Hydrangea macrophylla HOM05D005796 ORTHO05D007054 9.4e-70 267.7 193 71.0
DCAR_026077 Daucus carota HOM05D005796 ORTHO05D007054 2.1e-69 266.5 178 74.2
MD06G1187500 Malus domestica HOM05D005796 ORTHO05D007054 2.7e-69 266.2 223 65.0
Gohir.A07G065400 Gossypium hirsutum HOM05D005796 ORTHO05D007054 3.6e-69 265.8 178 75.3
FAN13G2643 Fragaria x ananassa HOM05D005796 ORTHO05D007054 4.7e-69 265.4 193 69.4
Gorai.001G073800 Gossypium raimondii HOM05D005796 ORTHO05D007054 6.1e-69 265.0 178 75.3
Sc12g0006170 Simmondsia chinensis HOM05D005796 ORTHO05D007054 8.0e-69 264.6 178 74.7
Potri.015G065500 Populus trichocarpa HOM05D005796 ORTHO05D007054 1.0e-68 264.2 179 74.9
Cc04_g15610 Coffea canephora HOM05D005796 ORTHO05D007054 4.0e-68 262.3 209 66.5
PSO017G2472 Papaver somniferum HOM05D005796 ORTHO05D007054 5.2e-68 261.9 193 71.0
PSO478G3339 Papaver somniferum HOM05D005796 ORTHO05D007054 2.6e-67 259.6 193 70.5
MSTRG.4407 Avicennia marina HOM05D005796 ORTHO05D007054 3.4e-67 259.2 218 60.6
Lalb_Chr13g0303431 Lupinus albus HOM05D005796 ORTHO05D007054 3.4e-67 259.2 193 68.9
FAN18G3372 Fragaria x ananassa HOM05D005796 ORTHO05D007054 4.4e-67 258.8 215 64.7
Cpa.g.sc414.2 Carica papaya HOM05D005796 ORTHO05D007054 5.7e-67 258.5 177 73.4
HanXRQChr02g0045201 Helianthus annuus HOM05D005796 ORTHO05D007054 5.7e-67 258.5 166 75.9
Hund02671 Selenicereus undatus HOM05D005796 ORTHO05D007054 9.7e-67 257.7 177 73.4
Migut.D01857 Erythranthe guttata HOM05D005796 ORTHO05D007054 1.3e-66 257.3 213 62.0
SGA_v2.0_scaffold7G04086 Striga asiatica HOM05D005796 ORTHO05D007054 1.3e-66 257.3 180 70.0
Sp5g14000 Schrenkiella parvula HOM05D005796 ORTHO05D007054 2.2e-66 256.5 166 73.5
ATR0665G316 Amborella trichopoda HOM05D005796 ORTHO05D007054 3.7e-66 255.8 210 63.8
Aqoxy3G00785 Aquilegia oxysepala HOM05D005796 ORTHO05D007054 1.4e-65 253.8 192 69.3
FAN08G2559 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.4e-65 253.8 209 64.6
AL5G27300 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 1.8e-65 253.4 163 73.6
ECA247G3495 Erigeron canadensis HOM05D005796 ORTHO05D007054 1.8e-65 253.4 179 70.9
Eucgr.B00422 Eucalyptus grandis HOM05D005796 ORTHO05D007054 1.8e-65 253.4 162 77.2
Glyma.17G096600 Glycine max HOM05D005796 ORTHO05D007054 3.1e-65 252.7 186 67.7
CARHR156700 Cardamine hirsuta HOM05D005796 ORTHO05D007054 1.2e-64 250.8 162 72.2
Ca_21851_v3 Cicer arietinum L. HOM05D005796 ORTHO05D007054 1.6e-64 250.4 227 58.6
FAN04G0326 Fragaria x ananassa HOM05D005796 ORTHO05D007054 1.6e-64 250.4 279 53.4
Lsat_1_v5_gn_1_10700 Lactuca sativa HOM05D005796 ORTHO05D007054 3.5e-64 249.2 187 68.4
Oeu048731.1 Olea europaea HOM05D005796 ORTHO05D007054 3.5e-64 249.2 197 64.0
Phvul.003G193000 Phaseolus vulgaris HOM05D005796 ORTHO05D007054 3.5e-64 249.2 238 55.9
AUR62021745 Chenopodium quinoa HOM05D005796 ORTHO05D007054 4.5e-64 248.8 144 85.4
TPR.G38380 Trifolium pratense HOM05D005796 ORTHO05D007054 4.5e-64 248.8 220 56.8
Sabra15G0090700 Salix brachista HOM05D005796 ORTHO05D007054 1.0e-63 247.7 185 68.6
VMungo1215G0702 Vigna mungo HOM05D005796 ORTHO05D007054 1.0e-63 247.7 186 66.1
MBI03_g20464_MAGBIO Magnolia biondii HOM05D005796 ORTHO05D007054 1.7e-63 246.9 156 76.3
Carub.0005s1409 Capsella rubella HOM05D005796 ORTHO05D007054 2.9e-63 246.1 194 62.9
AT5G62720 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 5.0e-63 245.4 180 66.7
BraA01t02488Z Brassica rapa HOM05D005796 ORTHO05D007054 6.5e-63 245.0 166 69.9
AT3G47980 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 8.5e-63 244.6 163 71.2
BcaB05g22893 Brassica carinata HOM05D005796 ORTHO05D007054 8.5e-63 244.6 166 69.3
CDE02G2117 Ceratophyllum demersum HOM05D005796 ORTHO05D007054 1.1e-62 244.2 156 75.6
Carub.0008s2345 Capsella rubella HOM05D005796 ORTHO05D007054 1.5e-62 243.8 214 58.4
Aa31LG11G960 Aethionema arabicum HOM05D005796 ORTHO05D007054 2.5e-62 243.0 178 65.7
A01p25720 Brassica napus HOM05D005796 ORTHO05D007054 3.2e-62 242.7 166 68.7
Gohir.D07G069900 Gossypium hirsutum HOM05D005796 ORTHO05D007054 4.2e-62 242.3 178 71.3
Medtr4g107630 Medicago truncatula HOM05D005796 ORTHO05D007054 4.2e-62 242.3 177 65.5
AL8G39690 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 9.4e-62 241.1 208 62.0
C01p32410 Brassica napus HOM05D005796 ORTHO05D007054 9.4e-62 241.1 166 68.7
BolC1t03180H Brassica oleracea HOM05D005796 ORTHO05D007054 9.4e-62 241.1 166 68.7
BcaB02g09686 Brassica carinata HOM05D005796 ORTHO05D007054 1.6e-61 240.4 186 63.4
Lj4g0017253 Lotus japonicus HOM05D005796 ORTHO05D007054 2.1e-61 240.0 191 61.8
CARHR276510 Cardamine hirsuta HOM05D005796 ORTHO05D007054 2.7e-61 239.6 180 65.0
Sp2g25890 Schrenkiella parvula HOM05D005796 ORTHO05D007054 3.6e-61 239.2 199 62.3
THA.LOC104821456 Tarenaya hassleriana HOM05D005796 ORTHO05D007054 3.6e-61 239.2 186 63.4
A09p07830 Brassica napus HOM05D005796 ORTHO05D007054 4.7e-61 238.8 181 65.2
BraA09t36434Z Brassica rapa HOM05D005796 ORTHO05D007054 4.7e-61 238.8 181 65.2
BcaC04g23395 Brassica carinata HOM05D005796 ORTHO05D007054 1.8e-60 236.9 181 65.2
Os03g0684700 Oryza sativa ssp. japonica HOM05D005796 ORTHO05D007054 2.3e-60 236.5 153 72.5
BolC9t53794H Brassica oleracea HOM05D005796 ORTHO05D007054 4.0e-60 235.7 165 68.5
BraA06t25046Z Brassica rapa HOM05D005796 ORTHO05D007054 6.8e-60 235.0 262 52.3
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 8.8e-60 234.6 162 67.3
BcaC01g02511 Brassica carinata HOM05D005796 ORTHO05D007054 1.5e-59 233.8 191 61.8
BolC3t18656H Brassica oleracea HOM05D005796 ORTHO05D007054 1.5e-59 233.8 191 61.8
BraA06t25896Z Brassica rapa HOM05D005796 ORTHO05D007054 1.5e-59 233.8 191 61.3
Thhalv10004798m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 3.4e-59 232.6 181 64.1
unitig_0.g783 Utricularia gibba HOM05D005796 ORTHO05D007054 7.5e-59 231.5 162 67.3
A06p19660 Brassica napus HOM05D005796 ORTHO05D007054 9.8e-59 231.1 262 51.5
Zm00001eb217240 Zea mays HOM05D005796 ORTHO05D007054 6.3e-58 228.4 224 56.2
SEGI_40570 Sequoiadendron giganteum HOM05D005796 ORTHO05D007054 1.1e-57 227.6 177 61.0
BcaNung01383 Brassica carinata HOM05D005796 ORTHO05D007054 5.4e-57 225.3 185 61.6
Sed0018874 Sechium edule HOM05D005796 ORTHO05D007054 7.0e-57 224.9 176 71.0
C03p64010 Brassica napus HOM05D000012 ORTHO05D002455 1.6e-56 223.8 179 62.6
PGR083G2169 Punica granatum HOM05D005796 ORTHO05D007054 1.0e-55 221.1 176 67.6
BcaB02g09676 Brassica carinata HOM05D005796 ORTHO05D007054 1.3e-55 220.7 172 63.4
vmacro19431 Vaccinium macrocarpon HOM05D005796 ORTHO05D007054 1.3e-55 220.7 264 49.6
A06p29510 Brassica napus HOM05D000012 ORTHO05D002455 2.3e-55 219.9 179 61.5
Haze_07383 Corylus avellana HOM05D005796 ORTHO05D007054 8.6e-55 218.0 235 55.3
Thhalv10010656m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 6.6e-47 191.8 194 53.1
PGR083G0992 Punica granatum HOM05D005796 ORTHO05D007054 6.6e-47 191.8 142 70.4
COL.COLO4_37386 Corchorus olitorius HOM05D005796 ORTHO05D007054 8.6e-47 191.4 122 79.5
SalBow7G0869 Salvia bowleyana HOM05D005796 ORTHO05D007054 1.6e-45 187.2 128 74.2
Mapoly0029s0058 Marchantia polymorpha HOM05D005796 ORTHO05D007054 3.6e-45 186.0 155 56.1
Lj9A459G48 Lonicera japonica HOM05D005796 ORTHO05D007054 8.0e-45 184.9 128 75.0
C09p08810 Brassica napus HOM05D005796 ORTHO05D007054 1.4e-44 184.1 144 66.0
AagrBONN_evm.TU.Sc2ySwM_228.2536 Anthoceros agrestis HOM05D005796 ORTHO05D007054 4.0e-44 182.6 201 50.2
Aa31LG4G16620 Aethionema arabicum HOM05D005796 ORTHO05D007054 6.4e-42 175.3 142 60.6
SMO356G0151 Selaginella moellendorffii HOM05D005796 ORTHO05D007054 1.1e-41 174.5 145 57.9
BcaB01g00857 Brassica carinata HOM05D005796 ORTHO05D007054 7.8e-40 168.3 178 52.8
QL10p015509 Quercus lobata HOM05D005796 ORTHO05D007054 2.3e-39 166.8 95 80.0
BcaC09g49836 Brassica carinata HOM05D005796 ORTHO05D007054 1.9e-38 163.7 116 67.2
BcaNung07157 Brassica carinata HOM05D005796 ORTHO05D007054 1.9e-38 163.7 116 67.2
Zm00001eb053360 Zea mays HOM05D005796 ORTHO05D007054 1.1e-36 157.9 200 50.5
CAN.G4519.1 Capsicum annuum HOM05D005796 ORTHO05D007054 1.9e-33 147.1 82 82.9
Sabra12G0050500 Salix brachista HOM05D005796 ORTHO05D007054 1.7e-31 140.6 150 55.3
QL10p015507 Quercus lobata HOM05D005796 ORTHO05D007054 5.6e-22 109.0 168 50.0
FvH4_5g15530 Fragaria vesca HOM05D005796 ORTHO05D007054 3.6e-21 106.3 100 60.0
MCO14G168 Micromonas commoda HOM05D005796 ORTHO05D007054 1.9e-17 94.0 154 34.4
Nn4g23032 Nelumbo nucifera HOM05D005796 ORTHO05D007054 2.7e-16 90.1 98 52.0
Glyma.05G030200 Glycine max HOM05D005796 ORTHO05D007054 6.2e-13 79.0 50 72.0
Cre06.g295826 Chlamydomonas reinhardtii HOM05D005796 ORTHO05D007054 1.5e-11 74.3 129 31.0


User provided reference genes

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