Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 1.5e-247 859.4 549 100.0
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 5.7e-210 734.6 551 83.7
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 6.5e-206 721.1 551 83.5
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 1.0e-179 634.0 551 78.2
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 5.2e-163 578.6 553 75.9
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 4.8e-140 502.3 558 62.7
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 3.1e-139 499.6 557 65.4
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 4.5e-138 495.7 560 62.9
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.0e-134 484.6 559 61.7
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 8.7e-134 481.5 561 62.9
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 8.7e-134 481.5 561 61.7
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.8e-132 476.5 560 63.0
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 4.8e-132 475.7 560 62.5
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 1.1e-131 474.6 567 62.8
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.1e-131 474.6 560 64.3
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.4e-131 474.2 560 62.9
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 5.3e-131 472.2 560 60.2
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.2e-130 471.1 562 61.0
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 7.1e-128 461.8 563 63.2
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 9.3e-128 461.5 566 62.5
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 2.7e-127 459.9 559 63.1
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 4.6e-127 459.1 550 60.5
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 7.9e-127 458.4 559 64.6
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 6.7e-126 455.3 559 63.7
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 6.7e-126 455.3 583 57.5
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 1.6e-124 450.7 563 59.7
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 6.2e-124 448.7 562 62.3
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 6.2e-124 448.7 562 60.3
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 1.8e-123 447.2 570 63.0
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 1.8e-123 447.2 554 61.2
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 2.6e-122 443.4 554 59.6
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 1.0e-121 441.4 566 63.1
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 1.3e-121 441.0 561 62.6
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.3e-121 441.0 556 61.3
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 2.2e-121 440.3 562 60.5
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 2.9e-121 439.9 568 60.2
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 3.8e-121 439.5 553 58.6
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 2.5e-120 436.8 559 62.4
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 1.2e-119 434.5 556 61.2
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 2.1e-119 433.7 554 59.6
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 2.1e-119 433.7 563 58.6
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 2.7e-119 433.3 556 60.8
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 2.3e-118 430.3 563 58.1
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 3.9e-118 429.5 560 56.4
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 9.7e-117 424.9 571 61.3
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 9.7e-117 424.9 573 56.9
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 1.4e-115 421.0 600 55.5
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 1.8e-115 420.6 558 61.1
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 4.1e-115 419.5 560 58.9
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 2.0e-114 417.2 559 57.8
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 2.0e-114 417.2 559 57.6
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 2.6e-114 416.8 559 58.5
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 1.7e-113 414.1 561 63.6
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 9.4e-112 408.3 535 60.2
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 1.6e-111 407.5 561 58.3
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 1.6e-111 407.5 561 56.5
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 2.7e-111 406.8 563 57.4
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 1.4e-110 404.4 567 57.8
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.1e-109 401.4 550 60.4
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 7.4e-109 398.7 563 57.7
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 9.7e-109 398.3 559 59.2
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 9.7e-109 398.3 562 59.1
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 4.8e-108 396.0 556 55.2
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 8.2e-108 395.2 557 58.3
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 2.6e-106 390.2 570 58.1
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 4.5e-106 389.4 567 56.3
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 7.7e-106 388.7 594 51.5
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 1.3e-105 387.9 564 58.5
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 5.0e-105 386.0 568 56.9
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 3.6e-103 379.8 561 55.1
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 6.1e-103 379.0 559 55.6
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 6.1e-103 379.0 562 59.1
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 7.9e-103 378.6 559 54.0
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 1.0e-102 378.3 559 53.7
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 8.8e-102 375.2 563 54.4
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 1.7e-100 370.9 563 58.4
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 2.8e-100 370.2 554 56.0
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 8.2e-100 368.6 564 56.9
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 1.2e-98 364.8 564 53.4
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.1e-96 358.2 570 53.0
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 1.2e-95 354.8 571 52.7
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 1.6e-95 354.4 560 52.1
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 2.4e-91 340.5 569 52.7
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 2.6e-90 337.0 560 52.5
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 1.0e-89 335.1 562 52.8
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 2.9e-89 333.6 564 50.7
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 2.9e-89 333.6 556 53.2
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 1.9e-88 330.9 462 58.7
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 2.5e-88 330.5 557 54.8
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 3.2e-88 330.1 570 52.1
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.8e-86 324.3 567 50.8
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 5.2e-86 322.8 558 50.4
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 7.5e-85 318.9 611 47.6
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 1.8e-83 314.3 502 54.4
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 5.9e-82 309.3 566 49.8
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 2.1e-79 300.8 557 48.1
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 4.7e-79 299.7 570 52.1
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 6.8e-78 295.8 567 49.2
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 8.8e-78 295.4 560 48.6
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 1.3e-76 291.6 560 50.0
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 3.7e-76 290.0 555 52.4
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 1.4e-75 288.1 462 54.5
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 1.4e-75 288.1 569 45.0
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 5.4e-75 286.2 567 48.3
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 1.3e-73 281.6 597 45.6
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 6.6e-73 279.3 568 47.7
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 2.1e-71 274.2 570 47.4
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 1.8e-70 271.2 573 47.5
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 2.0e-69 267.7 415 52.0
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 7.5e-69 265.8 584 46.6
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 2.9e-68 263.8 556 47.7
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 1.4e-67 261.5 292 62.7
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 1.2e-66 258.5 212 70.8
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.6e-66 258.1 502 50.2
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 1.7e-65 254.6 613 44.5
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 8.6e-65 252.3 223 64.1
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.5e-64 251.5 219 66.7
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 3.3e-64 250.4 606 48.8
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 3.7e-60 236.9 169 75.7
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 5.4e-59 233.0 503 49.3
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 6.2e-55 219.5 197 65.5
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 8.6e-49 199.1 181 65.2
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 4.4e-45 186.8 546 38.8
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 2.2e-44 184.5 439 43.5
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 6.0e-42 176.4 329 48.0
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 8.1e-39 166.0 271 53.1
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 6.8e-38 162.9 408 40.7
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 4.2e-35 153.7 128 74.2
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 1.7e-33 148.3 285 48.1
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 5.8e-29 133.3 110 75.5
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 3.8e-28 130.6 134 64.9
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 7.9e-26 122.9 523 43.2
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 8.7e-25 119.4 112 67.0
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.3e-23 115.5 114 65.8
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 6.2e-23 113.2 77 71.4
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 4.5e-21 107.1 105 66.7
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 7.6e-21 106.3 74 68.9
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.3e-20 105.5 135 48.1
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 2.4e-19 101.3 64 82.8
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 6.7e-17 93.2 200 36.0
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 1.5e-16 92.0 58 86.2
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 4.3e-16 90.5 73 74.0
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 4.3e-16 90.5 73 74.0
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 2.1e-15 88.2 99 62.6
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 9.0e-14 82.8 58 81.0
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 4.9e-12 77.0 83 55.4
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.3e-09 68.9 61 63.9
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 2.5e-08 64.7 74 58.1
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 5.7e-08 63.5 114 50.9
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 3.1e-06 57.8 171 29.2


User provided reference genes

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