Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G014170 Citrullus lanatus HOM05D007939 ORTHO05D010027 4.8e-24 113.6 55 100.0
CsaV3_1G008140 Cucumis sativus L. HOM05D007939 ORTHO05D010027 5.1e-18 93.6 50 92.0
MELO3C002231.2 Cucumis melo HOM05D007939 ORTHO05D010027 1.1e-17 92.4 45 100.0
Sed0024093 Sechium edule HOM05D007939 ORTHO05D010027 3.3e-17 90.9 45 97.8
Aa31LG4G16500 Aethionema arabicum HOM05D007939 ORTHO05D010027 1.4e-15 85.5 45 88.9
CSS0005245 Camellia sinensis var. sinensis HOM05D007939 ORTHO05D010027 1.4e-15 85.5 45 91.1
Rhsim12G0160700 Rhododendron simsii HOM05D007939 ORTHO05D010027 1.4e-15 85.5 50 80.0
Ciclev10023252m.g Citrus clementina HOM05D007939 ORTHO05D010027 1.8e-15 85.1 45 88.9
COL.COLO4_05795 Corchorus olitorius HOM05D007939 ORTHO05D010027 1.8e-15 85.1 45 88.9
Nn4g22962 Nelumbo nucifera HOM05D007939 ORTHO05D010027 3.1e-15 84.3 45 88.9
CSS0025662 Camellia sinensis var. sinensis HOM05D007939 ORTHO05D010027 4.0e-15 84.0 45 88.9
Oeu041591.1 Olea europaea HOM05D007939 ORTHO05D010027 5.3e-15 83.6 47 87.2
Potri.012G074300 Populus trichocarpa HOM05D007939 ORTHO05D010027 5.3e-15 83.6 45 88.9
Oeu046758.2 Olea europaea HOM05D007939 ORTHO05D010027 6.9e-15 83.2 55 76.4
CiPaw.11G033900 Carya illinoinensis HOM05D007939 ORTHO05D010027 9.0e-15 82.8 45 86.7
MD14G1189000 Malus domestica HOM05D007939 ORTHO05D010027 9.0e-15 82.8 45 84.4
Thecc.03G001700 Theobroma cacao HOM05D007939 ORTHO05D010027 9.0e-15 82.8 45 86.7
BcaB02g10687 Brassica carinata HOM05D007939 ORTHO05D010027 1.2e-14 82.4 45 86.7
Cfa019042 Carpinus fangiana HOM05D007939 ORTHO05D010027 1.2e-14 82.4 45 86.7
Haze_07419 Corylus avellana HOM05D007939 ORTHO05D010027 1.2e-14 82.4 45 86.7
Manes.14G071800 Manihot esculenta HOM05D007939 ORTHO05D010027 1.2e-14 82.4 45 86.7
Hund02701 Selenicereus undatus HOM05D007939 ORTHO05D010027 1.2e-14 82.4 45 88.9
BcaB01g00871 Brassica carinata HOM05D007939 ORTHO05D010027 1.5e-14 82.0 45 84.4
BcaC01g01771 Brassica carinata HOM05D007939 ORTHO05D010027 1.5e-14 82.0 45 84.4
C03p72070 Brassica napus HOM05D007939 ORTHO05D010027 1.5e-14 82.0 45 84.4
BolC3t19505H Brassica oleracea HOM05D007939 ORTHO05D010027 1.5e-14 82.0 45 84.4
BraA06t25058Z Brassica rapa HOM05D007939 ORTHO05D010027 1.5e-14 82.0 45 84.4
CARHR156540 Cardamine hirsuta HOM05D007939 ORTHO05D010027 1.5e-14 82.0 45 86.7
Thhalv10010893m.g Eutrema salsugineum HOM05D007939 ORTHO05D010027 1.5e-14 82.0 45 84.4
Nn3g17057 Nelumbo nucifera HOM05D007939 ORTHO05D010027 1.5e-14 82.0 45 86.7
PGSC0003DMG400033058 Solanum tuberosum HOM05D007939 ORTHO05D010027 1.5e-14 82.0 53 79.2
Rhsim08G0164200 Rhododendron simsii HOM05D007939 ORTHO05D010027 2.6e-14 81.3 45 84.4
Lj9A455T57 Lonicera japonica HOM05D007939 ORTHO05D010027 4.5e-14 80.5 45 86.7
RcHm_v2.0_Chr7g0179931 Rosa chinensis HOM05D007939 ORTHO05D010027 4.5e-14 80.5 44 81.8
Solyc06g071260.4 Solanum lycopersicum HOM05D007939 ORTHO05D010027 4.5e-14 80.5 45 88.9
SGA_v2.0_scaffold7G04104 Striga asiatica HOM05D007939 ORTHO05D010027 4.5e-14 80.5 43 88.4
CAN.G628.63 Capsicum annuum HOM05D007939 ORTHO05D010027 5.8e-14 80.1 48 85.4
Prupe.5G181400 Prunus persica HOM05D007939 ORTHO05D010027 5.8e-14 80.1 45 82.2
Sabra12G0052700 Salix brachista HOM05D007939 ORTHO05D010027 5.8e-14 80.1 45 84.4
Sabra15G0093500 Salix brachista HOM05D007939 ORTHO05D010027 5.8e-14 80.1 48 79.2
Sp5g14120 Schrenkiella parvula HOM05D007939 ORTHO05D010027 5.8e-14 80.1 45 82.2
DCAR_021553 Daucus carota HOM05D007939 ORTHO05D010027 7.6e-14 79.7 45 84.4
AL5G27140 Arabidopsis lyrata HOM05D007939 ORTHO05D010027 1.3e-13 79.0 45 80.0
Gohir.A12G276700 Gossypium hirsutum HOM05D007939 ORTHO05D010027 1.3e-13 79.0 45 82.2
Gohir.D12G277700 Gossypium hirsutum HOM05D007939 ORTHO05D010027 1.3e-13 79.0 45 82.2
Gorai.008G298400 Gossypium raimondii HOM05D007939 ORTHO05D010027 1.3e-13 79.0 45 82.2
BolC3t18968H Brassica oleracea HOM05D007939 ORTHO05D010027 1.7e-13 78.6 48 79.2
C03p66950 Brassica napus HOM05D007939 ORTHO05D010027 2.2e-13 78.2 47 80.9
Glyma.05G032500 Glycine max HOM05D007939 ORTHO05D010027 2.9e-13 77.8 45 84.4
Cc04_g16150 Coffea canephora HOM05D007939 ORTHO05D010027 3.8e-13 77.4 44 81.8
Nitab4.5_0002101g0080 Nicotiana tabacum HOM05D007939 ORTHO05D010027 8.4e-13 76.3 44 86.4
HanXRQChr09g0271581 Helianthus annuus HOM05D007939 ORTHO05D010027 1.4e-12 75.5 50 76.0
SalBow3G2524 Salvia bowleyana HOM05D007939 ORTHO05D010027 1.4e-12 75.5 44 77.3
Solyc03g113670.4 Solanum lycopersicum HOM05D007939 ORTHO05D010027 1.4e-12 75.5 45 75.6
Carub.0005s1396 Capsella rubella HOM05D007939 ORTHO05D010027 1.9e-12 75.1 45 80.0
Lalb_Chr13g0298021 Lupinus albus HOM05D007939 ORTHO05D010027 1.9e-12 75.1 45 80.0
Atru.chr9.2381 Acer truncatum HOM05D007939 ORTHO05D010027 2.5e-12 74.7 45 80.0
Lj4g0008013 Lotus japonicus HOM05D007939 ORTHO05D010027 2.5e-12 74.7 45 77.8
Nitab4.5_0000642g0220 Nicotiana tabacum HOM05D007939 ORTHO05D010027 2.5e-12 74.7 45 75.6
PSO591G0029 Papaver somniferum HOM05D007939 ORTHO05D010027 2.5e-12 74.7 40 90.0
Migut.D01894 Erythranthe guttata HOM05D007939 ORTHO05D010027 3.2e-12 74.3 45 82.2
Phvul.003G196000 Phaseolus vulgaris HOM05D007939 ORTHO05D010027 3.2e-12 74.3 45 80.0
Nitab4.5_0000003g0340 Nicotiana tabacum HOM05D007939 ORTHO05D010027 4.2e-12 73.9 47 80.9
Medtr4g107140 Medicago truncatula HOM05D007939 ORTHO05D010027 7.1e-12 73.2 45 75.6
Nitab4.5_0002875g0050 Nicotiana tabacum HOM05D007939 ORTHO05D010027 7.1e-12 73.2 45 73.3
EL10Ac5g10844 Beta vulgaris HOM05D007939 ORTHO05D010027 1.2e-11 72.4 45 77.8
EL10Ac5g10864 Beta vulgaris HOM05D007939 ORTHO05D010027 1.2e-11 72.4 45 77.8
CAN.G853.35 Capsicum annuum HOM05D007939 ORTHO05D010027 1.6e-11 72.0 45 73.3
Peaxi162Scf00017g02235 Petunia axillaris HOM05D007939 ORTHO05D010027 1.6e-11 72.0 45 73.3
ATR0712G037 Amborella trichopoda HOM05D007939 ORTHO05D010027 2.1e-11 71.6 40 85.0
EL10Ac5g11334 Beta vulgaris HOM05D007939 ORTHO05D010027 4.6e-11 70.5 45 75.6
Lsat_1_v5_gn_4_74421 Lactuca sativa HOM05D007939 ORTHO05D010027 4.6e-11 70.5 50 70.0
Peaxi162Scf00689g00418 Petunia axillaris HOM05D007939 ORTHO05D010027 1.3e-10 68.9 47 74.5
unitig_21.g20455 Utricularia gibba HOM05D002627 ORTHO05D010027 2.3e-10 68.2 45 68.9
Zm00001eb302590 Zea mays HOM05D007939 ORTHO05D010027 1.5e-09 65.5 38 81.6
QL10p013938 Quercus lobata HOM05D007939 ORTHO05D010027 4.3e-09 63.9 44 70.5
Os03g0824500 Oryza sativa ssp. japonica HOM05D007939 ORTHO05D010027 5.7e-09 63.5 37 81.1
Zm00001eb151290 Zea mays HOM05D007939 ORTHO05D010027 9.7e-09 62.8 42 69.0
Zm00001eb123900 Zea mays HOM05D007939 ORTHO05D010027 2.2e-08 61.6 42 66.7


User provided reference genes

Program Settings