Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G014120 Citrullus lanatus HOM05D006519 ORTHO05D008306 2.9e-168 595.1 295 100.0
CsaV3_1G008220 Cucumis sativus L. HOM05D006519 ORTHO05D008306 9.4e-143 510.4 295 86.4
MELO3C002238.2 Cucumis melo HOM05D006519 ORTHO05D008306 1.0e-141 506.9 295 86.4
Sed0010209 Sechium edule HOM05D006519 ORTHO05D008306 1.7e-136 489.6 295 83.7
Prupe.5G179000 Prunus persica HOM05D006519 ORTHO05D008306 1.6e-105 386.7 294 68.0
CiPaw.11G031700 Carya illinoinensis HOM05D006519 ORTHO05D008306 1.9e-103 379.8 291 66.3
Haze_07439 Corylus avellana HOM05D006519 ORTHO05D008306 5.6e-103 378.3 296 65.2
MD06G1181000 Malus domestica HOM05D006519 ORTHO05D008306 5.6e-103 378.3 291 68.4
Ciclev10021480m.g Citrus clementina HOM05D006519 ORTHO05D008306 1.4e-101 373.6 289 65.1
RcHm_v2.0_Chr7g0179701 Rosa chinensis HOM05D006519 ORTHO05D008306 3.1e-101 372.5 292 63.4
CANSAT80G0931 Cannabis sativa HOM05D006519 ORTHO05D008306 5.2e-101 371.7 291 66.3
Gorai.012G002000 Gossypium raimondii HOM05D006519 ORTHO05D008306 6.4e-99 364.8 292 63.7
TWI81G0852 Tripterygium wilfordii HOM05D006519 ORTHO05D008306 8.3e-99 364.4 290 63.1
Psat0s1227g0160 Pisum sativum HOM05D006519 ORTHO05D008306 1.9e-98 363.2 255 69.8
Nn3g17016 Nelumbo nucifera HOM05D006519 ORTHO05D008306 2.4e-98 362.8 298 62.8
Actinidia34959 Actinidia chinensis HOM05D006519 ORTHO05D008306 3.2e-98 362.5 288 64.2
FvH4_5g16400 Fragaria vesca HOM05D006519 ORTHO05D008306 3.2e-98 362.5 257 66.5
FAN18G3891 Fragaria x ananassa HOM05D006519 ORTHO05D008306 3.2e-98 362.5 257 66.5
THA.LOC104809258 Tarenaya hassleriana HOM05D006519 ORTHO05D008306 4.1e-98 362.1 248 70.6
Glyma.05G033800 Glycine max HOM05D006519 ORTHO05D008306 9.2e-98 360.9 249 70.3
TAR629G1196 Trochodendron aralioides HOM05D006519 ORTHO05D008306 9.2e-98 360.9 293 66.2
Duzib068G0259 Durio zibethinus HOM05D006519 ORTHO05D008306 1.2e-97 360.5 290 64.5
FAN13G2537 Fragaria x ananassa HOM05D006519 ORTHO05D008306 1.6e-97 360.1 279 63.4
PSO591G0501 Papaver somniferum HOM05D006519 ORTHO05D008306 1.6e-97 360.1 306 61.1
Potri.012G076100 Populus trichocarpa HOM05D006519 ORTHO05D008306 2.1e-97 359.8 294 61.6
Gohir.D04G001000 Gossypium hirsutum HOM05D006519 ORTHO05D008306 3.5e-97 359.0 292 63.4
TPR.G37507 Trifolium pratense HOM05D006519 ORTHO05D008306 6.0e-97 358.2 264 68.2
GSVIVG01007824001 Vitis vinifera HOM05D006519 ORTHO05D008306 1.7e-96 356.7 297 62.6
FAN08G1114 Fragaria x ananassa HOM05D006519 ORTHO05D008306 3.0e-96 355.9 289 61.9
CSS0037543 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 3.9e-96 355.5 257 68.5
DCAR_031285 Daucus carota HOM05D006519 ORTHO05D008306 3.9e-96 355.5 294 63.3
Sabra12G0054300 Salix brachista HOM05D006519 ORTHO05D008306 3.9e-96 355.5 294 60.5
Gohir.A05G415200 Gossypium hirsutum HOM05D006519 ORTHO05D008306 5.1e-96 355.1 284 63.4
Medtr4g106410 Medicago truncatula HOM05D006519 ORTHO05D008306 6.6e-96 354.8 263 68.1
HanXRQChr09g0271821 Helianthus annuus HOM05D006519 ORTHO05D008306 1.1e-95 354.0 291 62.9
ECA232G3316 Erigeron canadensis HOM05D006519 ORTHO05D008306 1.5e-95 353.6 289 61.6
arahy.Tifrunner.gnm1.ann1.IBQC5J Arachis hypogaea HOM05D006519 ORTHO05D008306 4.3e-95 352.1 291 61.5
arahy.Tifrunner.gnm1.ann1.L198ZR Arachis hypogaea HOM05D006519 ORTHO05D008306 4.3e-95 352.1 291 61.9
CSS0018091 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 4.3e-95 352.1 261 67.0
Sc12g0005660 Simmondsia chinensis HOM05D006519 ORTHO05D008306 9.5e-95 350.9 293 61.8
Lj4g0003537 Lotus japonicus HOM05D006519 ORTHO05D008306 2.8e-94 349.4 295 62.0
Sopen03g032910 Solanum pennellii HOM05D006519 ORTHO05D008306 5.2e-93 345.1 296 61.5
Thecc.03G004500 Theobroma cacao HOM05D006519 ORTHO05D008306 5.2e-93 345.1 289 62.3
Lalb_Chr07g0182571 Lupinus albus HOM05D006519 ORTHO05D008306 6.8e-93 344.7 275 63.3
Solyc03g113860.2 Solanum lycopersicum HOM05D006519 ORTHO05D008306 6.8e-93 344.7 295 60.3
Ca_21889_v3 Cicer arietinum L. HOM05D006519 ORTHO05D008306 1.2e-92 344.0 255 67.8
MBI14_g12785_MAGBIO Magnolia biondii HOM05D006519 ORTHO05D008306 1.2e-92 344.0 289 62.6
Lsat_1_v5_gn_4_73480 Lactuca sativa HOM05D006519 ORTHO05D008306 1.5e-92 343.6 291 60.5
AT5G50110 Arabidopsis thaliana HOM05D006519 ORTHO05D008306 2.6e-92 342.8 268 64.2
Nitab4.5_0003386g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 5.8e-92 341.7 291 59.8
Oeu016332.2 Olea europaea HOM05D006519 ORTHO05D008306 2.9e-91 339.3 291 61.2
Cc04_g13570 Coffea canephora HOM05D006519 ORTHO05D008306 4.9e-91 338.6 295 59.0
CAN.G853.13 Capsicum annuum HOM05D006519 ORTHO05D008306 1.4e-90 337.0 301 58.8
Sp6g11980 Schrenkiella parvula HOM05D006519 ORTHO05D008306 1.4e-90 337.0 288 59.0
Hund02710 Selenicereus undatus HOM05D006519 ORTHO05D008306 1.4e-90 337.0 288 61.5
A03p27660 Brassica napus HOM05D006519 ORTHO05D008306 2.4e-90 336.3 288 59.0
BraA03t11979Z Brassica rapa HOM05D006519 ORTHO05D008306 2.4e-90 336.3 288 59.0
Carub.0008s1012 Capsella rubella HOM05D006519 ORTHO05D008306 2.4e-90 336.3 269 62.1
Ah.11g046180 Amaranthus hybridus HOM05D006519 ORTHO05D008306 3.2e-90 335.9 288 59.0
CARHR258520 Cardamine hirsuta HOM05D006519 ORTHO05D008306 4.1e-90 335.5 248 65.7
PGSC0003DMG400024585 Solanum tuberosum HOM05D006519 ORTHO05D008306 7.1e-90 334.7 295 59.0
BcaC01g04830 Brassica carinata HOM05D006519 ORTHO05D008306 1.6e-89 333.6 288 58.3
Migut.I00056 Erythranthe guttata HOM05D006519 ORTHO05D008306 1.6e-89 333.6 249 67.1
BcaB01g02918 Brassica carinata HOM05D006519 ORTHO05D008306 2.1e-89 333.2 297 58.9
BolC3t15659H Brassica oleracea HOM05D006519 ORTHO05D008306 2.1e-89 333.2 288 58.0
Aa31sc174G50 Aethionema arabicum HOM05D006519 ORTHO05D008306 4.6e-89 332.0 292 58.2
MSTRG.11426 Avicennia marina HOM05D006519 ORTHO05D008306 4.6e-89 332.0 295 61.7
C03p33370 Brassica napus HOM05D006519 ORTHO05D008306 1.3e-88 330.5 288 57.6
AUR62008282 Chenopodium quinoa HOM05D006519 ORTHO05D008306 5.1e-88 328.6 280 59.6
EL10Ac5g10829 Beta vulgaris HOM05D006519 ORTHO05D008306 3.6e-86 322.4 347 51.9
PGR083G2560 Punica granatum HOM05D006519 ORTHO05D008306 3.6e-86 322.4 285 58.2
Atru.chr9.2404 Acer truncatum HOM05D006519 ORTHO05D008306 3.1e-85 319.3 289 60.6
Eucgr.B00339 Eucalyptus grandis HOM05D006519 ORTHO05D008306 8.4e-83 311.2 223 69.1
SalBow5G4476 Salvia bowleyana HOM05D006519 ORTHO05D008306 1.9e-82 310.1 293 55.6
SalBow5G0752 Salvia bowleyana HOM05D006519 ORTHO05D008306 2.4e-82 309.7 293 55.6
Phvul.003G197000 Phaseolus vulgaris HOM05D006519 ORTHO05D008306 5.1e-80 302.0 211 70.1
AL8G24100 Arabidopsis lyrata HOM05D006519 ORTHO05D008306 1.1e-79 300.8 223 66.4
COL.COLO4_04635 Corchorus olitorius HOM05D006519 ORTHO05D008306 1.1e-79 300.8 249 63.1
Thhalv10014373m.g Eutrema salsugineum HOM05D006519 ORTHO05D008306 1.5e-79 300.4 284 54.9
Rhsim12G0161700 Rhododendron simsii HOM05D006519 ORTHO05D008306 1.9e-79 300.1 278 59.7
ATR0314G030 Amborella trichopoda HOM05D006519 ORTHO05D008306 3.3e-79 299.3 245 63.3
Peaxi162Scf00017g02523 Petunia axillaris HOM05D006519 ORTHO05D008306 1.2e-78 297.4 224 66.5
Zm00001eb279990 Zea mays HOM05D006519 ORTHO05D008306 2.1e-73 280.0 243 58.0
Mapoly0003s0145 Marchantia polymorpha HOM05D006519 ORTHO05D008306 1.3e-72 277.3 247 57.9
SGA_v2.0_scaffold467G52031 Striga asiatica HOM05D006519 ORTHO05D008306 2.3e-72 276.6 210 64.8
Lj9C454G3 Lonicera japonica HOM05D006519 ORTHO05D008306 5.3e-69 265.4 285 52.6
Pp3c21_11830 Physcomitrium patens HOM05D006519 ORTHO05D008306 1.2e-68 264.2 264 50.4
AUR62031043 Chenopodium quinoa HOM05D006519 ORTHO05D008306 1.3e-67 260.8 230 58.7
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 4.9e-67 258.8 210 61.0
vmacro16588 Vaccinium macrocarpon HOM05D006519 ORTHO05D008306 4.0e-61 239.2 191 63.9
SMO236G0037 Selaginella moellendorffii HOM05D006519 ORTHO05D008306 1.9e-58 230.3 239 51.5
MD14G1186900 Malus domestica HOM05D006519 ORTHO05D008306 1.8e-56 223.8 182 63.7
Hma1.2p1_0002F.1_g002810 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 2.3e-56 223.4 236 53.8
Manes.06G100700 Manihot esculenta HOM05D006519 ORTHO05D008306 2.3e-56 223.4 210 58.1
MD14G1186100 Malus domestica HOM05D006519 ORTHO05D008306 3.9e-56 222.6 229 55.0
Hma1.2p1_0002F.1_g002800 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 1.3e-51 207.6 166 62.7
VMungo1215G1861 Vigna mungo HOM05D006519 ORTHO05D008306 2.2e-51 206.8 196 55.6
MD13G1183500 Malus domestica HOM05D006519 ORTHO05D008306 4.9e-51 205.7 145 70.3
Nitab4.5_0001642g0020 Nicotiana tabacum HOM05D006519 ORTHO05D008306 2.5e-47 193.4 146 65.8
AagrBONN_evm.TU.Sc2ySwM_228.2029 Anthoceros agrestis HOM05D006519 ORTHO05D008306 1.3e-46 191.0 194 53.1
MCO15G300 Micromonas commoda HOM05D006519 ORTHO05D008306 1.5e-44 184.1 249 45.8
Cre09.g394584 Chlamydomonas reinhardtii HOM05D006519 ORTHO05D008306 3.8e-43 179.5 327 36.4
HPP92_010835 Vanilla planifolia HOM05D006519 ORTHO05D008306 1.1e-42 177.9 173 55.5
SEGI_15669 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 3.1e-37 159.8 126 60.3
Cpa.g.sc35.56 Carica papaya HOM05D006519 ORTHO05D008306 3.4e-36 156.4 102 73.5
Glyma.17G093302 Glycine max HOM05D006519 ORTHO05D008306 5.9e-36 155.6 114 66.7
Actinidia19081 Actinidia chinensis HOM05D006519 ORTHO05D008306 1.0e-35 154.8 152 51.3
arahy.Tifrunner.gnm1.ann1.KZGX7R Arachis hypogaea HOM05D006519 ORTHO05D008306 1.8e-32 144.1 105 64.8
Nitab4.5_0001642g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 1.4e-29 134.4 133 53.4
C05p16930 Brassica napus HOM05D006519 ORTHO05D008306 3.1e-29 133.3 99 63.6
HanXRQChr11g0328331 Helianthus annuus HOM05D006519 ORTHO05D008306 3.1e-29 133.3 104 61.5
arahy.Tifrunner.gnm1.ann1.J4WABN Arachis hypogaea HOM05D006519 ORTHO05D008306 7.0e-29 132.1 97 61.9
Os06g0239000 Oryza sativa ssp. japonica HOM05D006519 ORTHO05D008306 1.8e-24 117.5 101 59.4
arahy.Tifrunner.gnm1.ann1.9L22J7 Arachis hypogaea HOM05D006519 ORTHO05D014446 1.1e-23 114.8 102 57.8
CDE06G0478 Ceratophyllum demersum HOM05D006519 ORTHO05D008306 1.3e-22 111.3 97 56.7
BcaC05g25762 Brassica carinata HOM05D006519 ORTHO05D008306 2.9e-19 100.1 80 62.5
PRCOL_00000545 Prasinoderma coloniale HOM05D006519 ORTHO05D008306 1.2e-17 94.7 150 41.3
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 6.1e-17 92.4 125 43.2
CBR_g30328 Chara braunii HOM05D000019 ORTHO05D000048 3.0e-16 90.1 97 53.6
arahy.Tifrunner.gnm1.ann1.RNN7F2 Arachis hypogaea HOM05D006519 ORTHO05D008306 4.4e-15 86.3 98 48.0
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 2.8e-14 83.6 67 58.2
arahy.Tifrunner.gnm1.ann1.PY279F Arachis hypogaea HOM05D006519 ORTHO05D008306 4.1e-13 79.7 65 61.5
Dinv20697 Davidia involucrata HOM05D006519 ORTHO05D008306 1.2e-12 78.2 129 42.6
SEGI_16810 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 3.5e-12 76.6 49 71.4
Potri.015G071001 Populus trichocarpa HOM05D006519 ORTHO05D008306 1.5e-10 71.2 50 70.0


User provided reference genes

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