Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G013980 Citrullus lanatus HOM05D007233 ORTHO05D009043 4.0e-72 274.6 136 100.0
Sed0016181 Sechium edule HOM05D007233 ORTHO05D009043 6.8e-64 247.3 136 89.0
MELO3C004843.2 Cucumis melo HOM05D007233 ORTHO05D009043 1.1e-61 240.0 134 87.3
CsaV3_1G014310 Cucumis sativus L. HOM05D007233 ORTHO05D009043 1.0e-59 233.4 134 84.3
Thecc.09G294400 Theobroma cacao HOM05D007233 ORTHO05D009043 3.5e-52 208.4 134 76.1
Potri.004G190200 Populus trichocarpa HOM05D007233 ORTHO05D009043 2.3e-51 205.7 134 76.1
Sabra04G0127900 Salix brachista HOM05D007233 ORTHO05D009043 2.3e-51 205.7 134 73.9
COL.COLO4_31139 Corchorus olitorius HOM05D007233 ORTHO05D009043 3.0e-51 205.3 136 73.5
Manes.04G010800 Manihot esculenta HOM05D007233 ORTHO05D009043 6.6e-51 204.1 134 74.6
ClCG08G000500 Citrullus lanatus HOM05D007233 ORTHO05D009043 1.3e-49 199.9 99 100.0
Gohir.D13G228300 Gossypium hirsutum HOM05D007233 ORTHO05D009043 2.1e-49 199.1 134 72.4
Lj3g0012043 Lotus japonicus HOM05D007233 ORTHO05D009043 2.1e-49 199.1 137 70.8
TAR369G0714 Trochodendron aralioides HOM05D007233 ORTHO05D009043 1.1e-48 196.8 133 70.7
CSS0019792 Camellia sinensis var. sinensis HOM05D007233 ORTHO05D009043 3.1e-48 195.3 137 70.8
Haze_23494 Corylus avellana HOM05D007233 ORTHO05D009043 3.1e-48 195.3 138 71.7
CiPaw.14G104900 Carya illinoinensis HOM05D007233 ORTHO05D009043 4.0e-48 194.9 141 69.5
Ciclev10030019m.g Citrus clementina HOM05D007233 ORTHO05D009043 4.0e-48 194.9 135 68.9
PGR119G2223 Punica granatum HOM05D007233 ORTHO05D009043 4.0e-48 194.9 132 72.0
VMungo1127G1048 Vigna mungo HOM05D007233 ORTHO05D009043 9.0e-48 193.7 136 69.1
QL01p014111 Quercus lobata HOM05D007233 ORTHO05D009043 1.5e-47 193.0 129 69.0
Phvul.011G088600 Phaseolus vulgaris HOM05D007233 ORTHO05D009043 2.6e-47 192.2 136 67.6
SalBow3G1176 Salvia bowleyana HOM05D007233 ORTHO05D009043 4.5e-47 191.4 138 66.7
GSVIVG01031420001 Vitis vinifera HOM05D007233 ORTHO05D009043 4.5e-47 191.4 134 67.2
Lalb_Chr03g0027851 Lupinus albus HOM05D007233 ORTHO05D009043 5.8e-47 191.0 137 68.6
AT1G08390 Arabidopsis thaliana HOM05D007233 ORTHO05D009043 7.6e-47 190.7 138 65.9
Carub.0001s0774 Capsella rubella HOM05D007233 ORTHO05D009043 7.6e-47 190.7 137 66.4
TPR.G32017 Trifolium pratense HOM05D007233 ORTHO05D009043 7.6e-47 190.7 135 68.9
Ca_10766_v3 Cicer arietinum L. HOM05D007233 ORTHO05D009043 9.9e-47 190.3 135 69.6
Prupe.6G116400 Prunus persica HOM05D007233 ORTHO05D009043 9.9e-47 190.3 132 68.9
AL1G18800 Arabidopsis lyrata HOM05D007233 ORTHO05D009043 2.2e-46 189.1 137 65.0
BcaB07g34087 Brassica carinata HOM05D007233 ORTHO05D009043 2.2e-46 189.1 137 65.7
C05p06530 Brassica napus HOM05D007233 ORTHO05D009043 2.2e-46 189.1 137 65.7
BolC5t29413H Brassica oleracea HOM05D007233 ORTHO05D009043 2.2e-46 189.1 137 65.7
A06p05410 Brassica napus HOM05D007233 ORTHO05D009043 2.9e-46 188.7 137 65.7
BraA06t23750Z Brassica rapa HOM05D007233 ORTHO05D009043 2.9e-46 188.7 137 65.7
Sp1g07040 Schrenkiella parvula HOM05D007233 ORTHO05D009043 4.9e-46 188.0 137 64.2
Duzib170G0414 Durio zibethinus HOM05D007233 ORTHO05D009043 6.4e-46 187.6 134 70.9
Medtr4g056300 Medicago truncatula HOM05D007233 ORTHO05D009043 6.4e-46 187.6 135 68.1
THA.LOC104826400 Tarenaya hassleriana HOM05D007233 ORTHO05D009043 6.4e-46 187.6 138 65.9
Gohir.A13G223500 Gossypium hirsutum HOM05D007233 ORTHO05D009043 2.4e-45 185.7 134 70.9
MSTRG.17742 Avicennia marina HOM05D007233 ORTHO05D009043 7.1e-45 184.1 138 66.7
Aqoxy1G01014 Aquilegia oxysepala HOM05D007233 ORTHO05D009043 1.6e-44 183.0 133 66.9
Aa31LG1G6480 Aethionema arabicum HOM05D007233 ORTHO05D009043 4.6e-44 181.4 140 62.1
Thhalv10009077m.g Eutrema salsugineum HOM05D007233 ORTHO05D009043 7.9e-44 180.6 137 63.5
Glyma.11G190700 Glycine max HOM05D007233 ORTHO05D009043 1.0e-43 180.3 144 63.2
Migut.N02527 Erythranthe guttata HOM05D007233 ORTHO05D009043 3.0e-43 178.7 138 65.2
SGA_v2.0_scaffold93G28323 Striga asiatica HOM05D007233 ORTHO05D009043 3.9e-43 178.3 142 61.3
Hund07722 Selenicereus undatus HOM05D007233 ORTHO05D009043 5.1e-43 177.9 134 64.2
SHI05395 Sapria himalayana HOM05D007233 ORTHO05D009043 6.7e-43 177.6 135 65.9
FvH4_3g30010 Fragaria vesca HOM05D007233 ORTHO05D009043 8.7e-43 177.2 133 60.9
Rhsim13G0103700 Rhododendron simsii HOM05D007233 ORTHO05D009043 1.1e-42 176.8 129 69.8
vmacro03232 Vaccinium macrocarpon HOM05D007233 ORTHO05D009043 1.5e-42 176.4 129 69.8
EL10Ac9g21047 Beta vulgaris HOM05D007233 ORTHO05D009043 1.9e-42 176.0 139 61.9
CARHR008260 Cardamine hirsuta HOM05D007233 ORTHO05D009043 1.9e-42 176.0 140 62.1
FAN25G1956 Fragaria x ananassa HOM05D007233 ORTHO05D009043 1.9e-42 176.0 133 60.2
Lsat_1_v5_gn_1_61521 Lactuca sativa HOM05D007233 ORTHO05D009043 5.6e-42 174.5 138 63.8
CANSAT78G0435 Cannabis sativa HOM05D007233 ORTHO05D009043 9.6e-42 173.7 136 61.0
unitig_699.g19183 Utricularia gibba HOM05D007233 ORTHO05D009043 1.6e-41 172.9 135 63.7
Eucgr.F03331 Eucalyptus grandis HOM05D007233 ORTHO05D009043 2.8e-41 172.2 143 62.9
FAN21G0394 Fragaria x ananassa HOM05D007233 ORTHO05D009043 2.8e-41 172.2 133 59.4
HanXRQChr11g0345871 Helianthus annuus HOM05D007233 ORTHO05D009043 1.1e-40 170.2 136 62.5
RcHm_v2.0_Chr5g0055931 Rosa chinensis HOM05D007233 ORTHO05D009043 1.1e-40 170.2 133 60.2
ATR0665G357 Amborella trichopoda HOM05D007233 ORTHO05D009043 1.2e-39 166.8 129 64.3
Dinv29405 Davidia involucrata HOM05D007233 ORTHO05D009043 2.0e-39 166.0 169 53.8
Cc01_g10010 Coffea canephora HOM05D007233 ORTHO05D009043 5.8e-39 164.5 142 58.5
arahy.Tifrunner.gnm1.ann1.5NF9YD Arachis hypogaea HOM05D007233 ORTHO05D009043 1.3e-38 163.3 156 56.4
MD11G1153700 Malus domestica HOM05D007233 ORTHO05D009043 1.7e-38 162.9 132 62.1
AUR62031769 Chenopodium quinoa HOM05D007233 ORTHO05D009043 2.9e-38 162.2 142 56.3
DCAR_015489 Daucus carota HOM05D007233 ORTHO05D009043 8.4e-38 160.6 137 59.9
Peaxi162Scf00150g00710 Petunia axillaris HOM05D007233 ORTHO05D009043 1.4e-37 159.8 138 58.7
Nitab4.5_0000442g0180 Nicotiana tabacum HOM05D007233 ORTHO05D009043 4.2e-37 158.3 133 61.7
Solyc11g066690.2 Solanum lycopersicum HOM05D007233 ORTHO05D009043 7.1e-37 157.5 138 56.5
Sopen11g026420 Solanum pennellii HOM05D007233 ORTHO05D009043 7.1e-37 157.5 138 56.5
PGSC0003DMG400000464 Solanum tuberosum HOM05D007233 ORTHO05D009043 4.6e-36 154.8 138 55.1
Ah.01g016160 Amaranthus hybridus HOM05D007233 ORTHO05D009043 1.0e-35 153.7 145 55.2
MBI04_g22192_MAGBIO Magnolia biondii HOM05D007233 ORTHO05D009043 1.0e-35 153.7 106 67.9
ECA248G0451 Erigeron canadensis HOM05D007233 ORTHO05D009043 1.3e-35 153.3 138 55.1
PSO063G0378 Papaver somniferum HOM05D007233 ORTHO05D009043 1.5e-34 149.8 133 58.6
PSO339G4613 Papaver somniferum HOM05D007233 ORTHO05D009043 1.9e-34 149.4 133 57.9
CAN.G644.46 Capsicum annuum HOM05D007233 ORTHO05D009043 2.5e-34 149.1 138 56.5
Atru.chr3.3421 Acer truncatum HOM05D007233 ORTHO05D009043 9.0e-32 140.6 96 66.7
Cpa.g.sc47.40 Carica papaya HOM05D007233 ORTHO05D009043 1.0e-30 137.1 100 67.0
Gorai.013G259000 Gossypium raimondii HOM05D007233 ORTHO05D009043 4.9e-30 134.8 108 65.7
Haze_23472 Corylus avellana HOM05D007233 ORTHO05D009043 2.7e-28 129.0 134 57.5
TWI31G0123 Tripterygium wilfordii HOM05D007233 ORTHO05D009043 2.2e-25 119.4 118 52.5
Zm00001eb053200 Zea mays HOM05D007233 ORTHO05D009043 6.3e-25 117.9 142 48.6
Pp3c26_4940 Physcomitrium patens HOM05D007233 ORTHO05D009043 1.1e-24 117.1 136 44.1
Pp3c26_4950 Physcomitrium patens HOM05D007233 ORTHO05D009043 1.1e-24 117.1 136 44.1
Cfa020420 Carpinus fangiana HOM05D007233 ORTHO05D009043 1.4e-24 116.7 95 64.2
Cfa010203 Carpinus fangiana HOM05D007233 ORTHO05D009043 3.1e-24 115.5 98 62.2
Haze_23479 Corylus avellana HOM05D007233 ORTHO05D009043 4.1e-24 115.2 94 61.7
Nn6g35132 Nelumbo nucifera HOM05D007233 ORTHO05D009043 4.1e-24 115.2 85 61.2
Os03g0684300 Oryza sativa ssp. japonica HOM05D007233 ORTHO05D009043 4.1e-24 115.2 140 44.3
Psat0s3169g0040 Pisum sativum HOM05D007233 ORTHO05D009043 6.9e-24 114.4 101 61.4
Mapoly0016s0182 Marchantia polymorpha HOM05D007233 ORTHO05D009043 7.6e-23 110.9 131 45.0
Haze_23491 Corylus avellana HOM05D007233 ORTHO05D009043 1.0e-22 110.5 148 46.6
arahy.Tifrunner.gnm1.ann1.9UEW9D Arachis hypogaea HOM05D007233 ORTHO05D009043 9.4e-21 104.0 122 46.7
AagrBONN_evm.TU.Sc2ySwM_344.3909 Anthoceros agrestis HOM05D007233 ORTHO05D009043 2.8e-17 92.4 88 46.6
Sc12g0003860 Simmondsia chinensis HOM05D007233 ORTHO05D009043 4.1e-16 88.6 80 56.2
Oeu035529.3 Olea europaea HOM05D007233 ORTHO05D009043 2.0e-15 86.3 79 57.0
CDE02G1642 Ceratophyllum demersum HOM05D007233 ORTHO05D009043 1.0e-14 84.0 81 55.6
Duzib168G0428 Durio zibethinus HOM05D007233 ORTHO05D009043 2.2e-14 82.8 101 48.5
Haze_23488 Corylus avellana HOM05D007233 ORTHO05D009043 4.2e-13 78.6 90 51.1
arahy.Tifrunner.gnm1.ann1.3ZRX2Z Arachis hypogaea HOM05D007233 ORTHO05D009043 7.4e-10 67.8 66 53.0
Potri.002G256001 Populus trichocarpa HOM05D007233 ORTHO05D009043 1.3e-09 67.0 40 82.5
Oeu000616.2 Olea europaea HOM05D007233 ORTHO05D009043 2.6e-07 59.3 89 39.3
Actinidia14340 Actinidia chinensis HOM05D007233 ORTHO05D009043 2.2e-06 56.2 57 54.4


User provided reference genes

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