Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 3.0e-279 964.5 488 100.0
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 1.8e-244 849.0 486 88.9
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 7.5e-238 827.0 488 86.7
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 3.4e-230 801.6 486 83.3
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.1e-225 786.6 487 83.4
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 3.7e-221 771.5 487 82.1
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 3.0e-186 655.6 493 73.2
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 3.9e-170 602.1 491 63.5
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 3.7e-168 595.5 489 62.4
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 6.9e-167 591.3 485 61.9
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 2.0e-166 589.7 486 61.5
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 7.9e-163 577.8 494 60.9
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 5.1e-162 575.1 489 59.7
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 5.1e-162 575.1 479 61.2
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 2.0e-161 573.2 490 60.4
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 3.3e-161 572.4 493 60.9
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 1.7e-160 570.1 490 61.0
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 2.8e-160 569.3 487 58.9
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 3.7e-160 568.9 487 59.5
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 3.7e-160 568.9 491 60.3
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 3.7e-160 568.9 485 61.0
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 6.3e-160 568.2 439 65.6
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 6.3e-160 568.2 491 60.3
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 6.3e-160 568.2 491 60.3
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 4.1e-159 565.5 487 60.0
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 1.2e-158 563.9 490 58.2
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 7.7e-158 561.2 587 52.3
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 1.3e-157 560.5 490 59.8
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 4.2e-156 555.4 482 60.4
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 5.5e-156 555.1 486 59.7
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 1.2e-155 553.9 482 60.4
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 2.1e-155 553.1 487 60.0
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 4.7e-155 552.0 478 58.8
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 2.3e-154 549.7 478 58.8
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 3.9e-154 548.9 482 59.5
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 1.5e-153 547.0 486 57.6
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 1.5e-153 547.0 490 57.6
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 2.0e-153 546.6 486 58.6
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 7.4e-153 544.7 434 62.2
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 9.7e-153 544.3 487 58.1
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 1.3e-152 543.9 490 57.6
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 8.2e-152 541.2 482 59.1
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 8.2e-152 541.2 491 57.2
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.4e-151 540.4 478 57.9
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 1.4e-151 540.4 487 58.1
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 2.4e-151 539.7 489 58.7
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 4.1e-151 538.9 493 57.6
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 4.1e-151 538.9 493 57.6
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 5.3e-151 538.5 497 58.4
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 9.1e-151 537.7 493 56.6
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 3.5e-150 535.8 493 56.8
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 4.5e-150 535.4 490 57.1
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 2.9e-149 532.7 488 57.0
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 2.9e-149 532.7 488 57.4
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 6.5e-149 531.6 485 57.1
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 8.5e-149 531.2 485 57.3
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 1.1e-148 530.8 496 56.5
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 1.1e-148 530.8 498 56.6
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 1.9e-148 530.0 439 59.5
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 3.2e-148 529.3 489 56.2
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 4.2e-148 528.9 493 57.0
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 1.6e-147 526.9 490 56.3
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 2.1e-147 526.6 492 57.3
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 4.7e-147 525.4 498 57.0
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 4.7e-147 525.4 487 56.7
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 3.0e-146 522.7 488 54.3
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 4.0e-146 522.3 493 55.8
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 6.7e-146 521.5 491 56.6
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 6.7e-146 521.5 496 56.0
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 5.7e-145 518.5 493 56.0
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 4.8e-144 515.4 482 56.4
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 2.4e-143 513.1 430 61.6
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 1.6e-142 510.4 495 55.2
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 2.0e-142 510.0 431 60.6
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 4.5e-142 508.8 487 56.9
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 1.0e-141 507.7 485 56.1
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 1.3e-141 507.3 429 60.6
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 1.7e-141 506.9 420 62.4
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 3.8e-141 505.8 486 55.1
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 5.0e-141 505.4 464 54.5
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 6.5e-141 505.0 489 55.4
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 6.5e-141 505.0 487 54.0
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 8.5e-141 504.6 490 56.1
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 3.2e-140 502.7 434 58.1
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 3.6e-139 499.2 488 55.1
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 3.6e-139 499.2 484 55.8
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 6.1e-139 498.4 434 58.5
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 4.0e-138 495.7 434 57.8
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 2.0e-137 493.4 480 53.8
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 4.4e-137 492.3 429 57.1
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 9.8e-137 491.1 474 55.3
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 6.3e-136 488.4 488 53.9
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 6.3e-136 488.4 441 56.5
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 8.3e-136 488.0 472 53.8
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 1.4e-135 487.3 495 53.9
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 1.8e-135 486.9 494 54.5
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 2.7e-134 483.0 495 53.5
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 2.7e-134 483.0 443 58.5
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 2.9e-133 479.6 490 53.3
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 2.7e-131 473.0 501 51.5
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 4.7e-131 472.2 443 56.9
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 3.0e-130 469.5 426 56.8
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 4.4e-129 465.7 484 51.2
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 4.9e-128 462.2 497 50.9
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 1.2e-126 457.6 438 55.3
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 2.0e-126 456.8 435 56.6
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 3.5e-126 456.1 480 51.0
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 6.6e-125 451.8 488 52.7
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 6.6e-125 451.8 499 50.9
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 6.6e-125 451.8 437 54.0
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 3.2e-119 433.0 497 47.1
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 5.9e-118 428.7 431 52.0
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 2.8e-115 419.9 448 51.6
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 8.3e-112 408.3 313 61.3
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 3.2e-111 406.4 425 53.9
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 1.6e-110 404.1 487 48.5
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 6.6e-109 398.7 406 53.9
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 5.8e-105 385.6 395 53.4
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 2.1e-99 367.1 426 50.2
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 5.8e-97 359.0 289 60.6
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 1.1e-95 354.8 434 46.3
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 1.4e-95 354.4 346 52.0
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 1.7e-93 347.4 494 42.1
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.1e-92 344.7 369 51.8
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 1.2e-89 334.7 444 44.8
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 1.3e-88 331.3 288 58.3
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 4.9e-88 329.3 474 40.7
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 5.3e-82 309.3 479 39.7
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 6.7e-77 292.4 291 52.9
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 8.1e-75 285.4 223 58.7
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 2.0e-73 280.8 299 48.8
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 2.6e-73 280.4 184 70.7
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 2.7e-70 270.4 451 37.7
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 9.0e-66 255.4 318 49.1
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 1.2e-62 245.0 165 70.3
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 9.6e-60 235.3 238 56.7
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 4.5e-49 199.9 173 57.8
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 8.5e-48 195.7 132 67.4
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 6.3e-43 179.5 415 32.5
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 1.4e-39 168.3 329 32.2
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 2.2e-32 144.4 128 57.0
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 5.3e-26 123.2 83 66.3
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 7.0e-26 122.9 70 75.7
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 3.5e-25 120.6 80 61.2
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 5.0e-24 116.7 206 34.0
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 4.1e-18 97.1 131 51.1
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 1.0e-16 92.4 51 76.5
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 2.3e-16 91.3 59 67.8
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 1.1e-15 89.0 59 66.1
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 1.8e-13 81.6 140 37.9
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 2.6e-12 77.8 57 66.7
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 4.9e-11 73.6 43 72.1
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 2.3e-08 64.7 397 25.4
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 2.1e-06 58.2 69 44.9


User provided reference genes

Program Settings