Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 1.5e-173 612.8 326 100.0
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 1.4e-110 403.7 291 78.0
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 4.4e-109 398.7 292 78.1
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 9.8e-109 397.5 292 77.7
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 5.2e-94 348.6 291 71.8
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 2.6e-93 346.3 304 65.8
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 2.6e-93 346.3 291 71.8
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 3.2e-91 339.3 274 67.5
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 7.3e-88 328.2 264 68.9
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 2.8e-87 326.2 290 62.1
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 4.7e-87 325.5 294 61.6
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 4.7e-87 325.5 294 61.6
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 6.2e-87 325.1 303 65.3
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 1.8e-86 323.6 295 66.4
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 2.4e-86 323.2 291 62.5
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 1.2e-85 320.9 293 61.8
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 1.5e-85 320.5 300 65.7
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 2.6e-85 319.7 298 62.1
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 2.6e-85 319.7 298 62.1
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 2.6e-85 319.7 314 63.1
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 3.4e-85 319.3 304 62.8
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 5.8e-85 318.5 298 61.7
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 7.6e-85 318.2 302 63.2
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 4.9e-84 315.5 292 64.0
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 6.4e-84 315.1 301 58.1
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 8.4e-84 314.7 301 62.8
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 1.4e-83 313.9 297 59.9
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 3.2e-83 312.8 291 60.5
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 4.1e-83 312.4 301 63.5
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 5.4e-83 312.0 286 65.0
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 1.2e-82 310.8 299 62.2
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 2.1e-82 310.1 320 58.4
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 2.7e-82 309.7 294 63.3
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 6.0e-82 308.5 295 65.8
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 1.3e-81 307.4 294 59.5
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 1.3e-81 307.4 292 66.1
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 8.7e-81 304.7 288 58.7
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 1.5e-80 303.9 301 56.8
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 3.3e-80 302.8 288 62.5
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 5.6e-80 302.0 260 65.8
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 7.3e-80 301.6 298 56.7
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 7.3e-80 301.6 303 64.0
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 1.2e-79 300.8 243 66.3
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 1.2e-79 300.8 313 56.9
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 2.1e-79 300.1 214 70.6
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 3.6e-79 299.3 300 57.7
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 1.1e-78 297.7 287 63.8
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.1e-78 297.7 287 63.8
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 1.4e-78 297.4 307 54.4
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 3.1e-78 296.2 239 66.9
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 4.0e-78 295.8 235 67.2
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 6.9e-78 295.0 287 59.2
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 9.0e-78 294.7 287 63.4
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 1.2e-77 294.3 292 56.2
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.0e-77 293.5 286 59.4
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 3.4e-77 292.7 290 58.6
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 4.4e-77 292.4 306 58.8
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 4.4e-77 292.4 300 57.3
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 7.6e-77 291.6 296 57.1
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 1.3e-76 290.8 291 58.4
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.7e-76 290.4 240 65.0
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 1.4e-75 287.3 209 69.9
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 4.2e-75 285.8 235 65.5
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 2.1e-74 283.5 247 61.9
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 2.1e-74 283.5 229 67.7
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 3.5e-74 282.7 244 61.9
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 3.5e-74 282.7 289 56.7
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 4.6e-74 282.3 276 59.4
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 7.8e-74 281.6 209 69.4
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 1.3e-73 280.8 235 63.4
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 1.3e-73 280.8 212 67.9
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 3.9e-73 279.3 242 66.9
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 8.7e-73 278.1 239 62.8
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 4.3e-72 275.8 214 65.9
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.8e-71 273.1 194 72.2
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 6.2e-71 271.9 289 58.1
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 8.1e-71 271.6 212 65.1
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 1.8e-70 270.4 215 64.2
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 5.3e-70 268.9 274 57.3
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 1.2e-69 267.7 254 60.2
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 1.5e-69 267.3 234 58.1
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 1.3e-68 264.2 236 58.9
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 3.8e-68 262.7 258 59.7
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 6.4e-68 261.9 260 64.2
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 1.1e-67 261.2 263 55.9
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 1.9e-67 260.4 291 53.3
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 2.1e-66 256.9 238 56.3
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 2.1e-66 256.9 204 69.1
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 1.0e-65 254.6 244 56.6
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 1.3e-65 254.2 311 48.9
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 3.9e-65 252.7 213 62.9
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 8.7e-65 251.5 304 51.6
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 8.7e-65 251.5 189 67.7
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 1.9e-64 250.4 192 66.1
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 5.6e-64 248.8 242 57.0
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 2.1e-63 246.9 209 60.3
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 3.7e-63 246.1 251 54.6
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 1.5e-61 240.7 190 66.8
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 2.2e-60 236.9 247 53.8
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 2.7e-58 229.9 244 54.1
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 4.6e-58 229.2 228 58.3
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 7.9e-58 228.4 161 72.7
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 2.3e-57 226.9 208 58.2
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 1.1e-54 218.0 120 85.0
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 4.2e-51 206.1 226 57.1
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 2.9e-44 183.3 207 48.3
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.5e-32 144.4 134 59.0
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 4.4e-32 142.9 191 47.1
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.2e-31 140.6 152 53.3
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 7.7e-29 132.1 158 45.6
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 1.7e-23 114.4 204 33.3
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 2.4e-22 110.5 64 79.7
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 1.2e-21 108.2 135 51.9
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 1.5e-19 101.3 120 50.0
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 3.2e-19 100.1 89 61.8
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 9.4e-19 98.6 115 49.6
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 6.1e-18 95.9 61 78.7
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 4.0e-17 93.2 92 58.7
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 1.7e-15 87.8 58 79.3
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 3.1e-14 83.6 55 70.9
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 1.6e-13 81.3 128 35.2
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 6.5e-12 75.9 107 38.3
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 5.5e-11 72.8 42 78.6
Cpa.g.sc685.1 Carica papaya HOM05D006234 ORTHO05D007813 1.0e-09 68.6 109 40.4
RcHm_v2.0_Chr6g0279701 Rosa chinensis HOM05D006234 ORTHO05D007813 1.7e-07 61.2 51 62.7
SalBow6G1357 Salvia bowleyana HOM05D003575 ORTHO05D003587 1.7e-07 61.2 43 72.1
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.2e-07 60.8 171 29.8
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 4.8e-07 59.7 183 29.5
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 8.3e-07 58.9 159 30.8
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.4e-06 57.4 134 34.3
SalBow3G0890 Salvia bowleyana HOM05D001251 ORTHO05D007813 3.1e-06 57.0 30 86.7
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 4.1e-06 56.6 159 32.1
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 5.4e-06 56.2 144 29.2
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 5.4e-06 56.2 159 30.2


User provided reference genes

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