Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 7.1e-167 590.5 294 100.0
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 1.6e-89 333.6 194 87.1
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 5.0e-88 328.6 194 86.1
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 3.1e-77 292.7 195 76.4
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 1.4e-66 257.3 186 69.9
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 7.1e-66 255.0 182 70.9
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 1.1e-63 247.7 186 68.3
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 1.5e-63 247.3 195 62.6
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 1.9e-63 246.9 213 61.5
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 5.6e-63 245.4 193 64.8
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 5.3e-61 238.8 178 69.1
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 6.9e-61 238.4 186 64.0
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 1.2e-60 237.7 184 64.7
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 1.5e-60 237.3 192 63.5
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 2.0e-60 236.9 192 65.6
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 2.0e-60 236.9 193 63.2
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 2.0e-60 236.9 204 59.8
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 2.6e-60 236.5 198 62.1
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 3.4e-60 236.1 182 64.8
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 3.4e-60 236.1 194 62.9
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 4.5e-60 235.7 182 64.8
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 5.8e-60 235.3 258 53.1
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 9.9e-60 234.6 197 62.4
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 9.9e-60 234.6 188 62.8
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 1.3e-59 234.2 184 66.3
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 1.7e-59 233.8 228 55.3
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 1.7e-59 233.8 224 56.2
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 2.2e-59 233.4 218 56.9
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 2.9e-59 233.0 230 56.1
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 3.8e-59 232.6 194 61.3
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.8e-59 232.6 198 58.6
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 6.4e-59 231.9 235 54.0
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 8.4e-59 231.5 205 60.0
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 1.1e-58 231.1 198 59.6
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.4e-58 230.7 192 62.5
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 1.4e-58 230.7 180 64.4
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 1.9e-58 230.3 225 55.1
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 3.2e-58 229.6 192 62.5
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 3.2e-58 229.6 184 62.5
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 4.2e-58 229.2 196 59.2
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 5.4e-58 228.8 184 62.5
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 7.1e-58 228.4 183 64.5
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 7.1e-58 228.4 180 62.8
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 7.1e-58 228.4 236 54.7
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 9.3e-58 228.0 192 60.9
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 9.3e-58 228.0 192 60.9
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 9.3e-58 228.0 196 60.2
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 1.2e-57 227.6 197 59.9
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 1.6e-57 227.3 186 62.9
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 2.1e-57 226.9 182 62.6
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.7e-57 226.5 198 57.1
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 3.5e-57 226.1 183 62.8
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 3.5e-57 226.1 228 53.5
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.0e-56 224.6 198 56.6
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 1.0e-56 224.6 210 57.1
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 1.3e-56 224.2 220 54.5
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 1.3e-56 224.2 191 59.7
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 1.8e-56 223.8 196 56.6
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.3e-56 223.4 198 56.1
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.3e-56 223.4 198 56.1
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 2.3e-56 223.4 198 56.6
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 2.3e-56 223.4 196 59.2
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 2.3e-56 223.4 202 58.4
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 3.0e-56 223.0 186 61.3
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 8.7e-56 221.5 198 55.6
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 2.5e-55 219.9 197 54.8
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 7.4e-55 218.4 223 54.7
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 1.3e-54 217.6 215 55.8
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 2.1e-54 216.9 212 56.6
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 6.9e-53 211.8 194 57.7
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 1.2e-52 211.1 194 58.2
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 2.2e-51 206.8 183 60.7
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 6.4e-51 205.3 194 56.2
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 8.4e-51 204.9 185 56.2
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 1.6e-49 200.7 182 59.3
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 6.0e-49 198.7 195 52.8
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 1.0e-48 198.0 194 53.1
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 1.0e-48 198.0 202 53.5
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 6.7e-48 195.3 250 45.6
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 8.7e-48 194.9 199 53.8
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 2.1e-46 190.3 198 51.0
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 6.2e-46 188.7 199 55.8
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 5.8e-44 182.2 196 54.6
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 3.8e-43 179.5 198 52.0
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 1.1e-42 177.9 197 51.3
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 5.5e-42 175.6 125 68.0
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 1.2e-41 174.5 196 50.0
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 2.7e-41 173.3 187 51.9
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 3.5e-41 172.9 220 43.2
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 4.6e-41 172.6 184 53.3
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 7.9e-41 171.8 171 55.6
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 1.3e-40 171.0 183 54.1
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 2.3e-40 170.2 183 54.1
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 2.3e-40 170.2 183 54.1
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 3.3e-39 166.4 186 53.8
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 2.8e-38 163.3 186 52.7
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 3.7e-38 162.9 199 48.2
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 3.1e-37 159.8 222 44.1
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 4.1e-37 159.5 176 47.7
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 5.3e-37 159.1 191 49.2
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 5.9e-36 155.6 178 48.3
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 1.0e-35 154.8 123 62.6
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 2.2e-35 153.7 192 50.5
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 1.3e-32 144.4 200 46.0
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 1.5e-31 141.0 182 48.9
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 9.7e-31 138.3 182 48.4
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 2.3e-24 117.1 160 46.9
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 9.4e-18 95.1 100 52.0
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.6e-17 94.4 64 64.1
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.1e-15 88.2 96 51.0
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 4.4e-15 86.3 74 50.0
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 4.5e-12 76.3 131 34.4
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 3.0e-08 63.5 81 43.2
vmacro02831 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 6.7e-08 62.4 86 46.5


User provided reference genes

Program Settings