Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G012620 Citrullus lanatus HOM05D007994 ORTHO05D010092 1.3e-154 549.7 271 100.0
CsaV3_1G014550 Cucumis sativus L. HOM05D007994 ORTHO05D010092 2.1e-133 479.2 271 87.8
MELO3C004786.2 Cucumis melo HOM05D007994 ORTHO05D010092 2.6e-131 472.2 271 85.6
Sed0020093 Sechium edule HOM05D007994 ORTHO05D010092 1.0e-103 380.6 272 72.4
Sabra09G0116600 Salix brachista HOM05D007994 ORTHO05D010092 9.4e-73 277.7 269 53.2
Dinv12515 Davidia involucrata HOM05D007994 ORTHO05D010092 3.6e-72 275.8 273 53.8
TAR623G0693 Trochodendron aralioides HOM05D007994 ORTHO05D010092 5.7e-70 268.5 273 55.7
Potri.009G148200 Populus trichocarpa HOM05D007994 ORTHO05D010092 7.5e-70 268.1 270 53.3
Duzib168G2077 Durio zibethinus HOM05D007994 ORTHO05D010092 1.3e-69 267.3 271 52.8
Thecc.09G290600 Theobroma cacao HOM05D007994 ORTHO05D010092 1.4e-68 263.8 268 53.0
Manes.11G158100 Manihot esculenta HOM05D007994 ORTHO05D010092 1.8e-68 263.5 272 51.5
TWI75G1300 Tripterygium wilfordii HOM05D007994 ORTHO05D010092 2.0e-67 260.0 267 49.8
Cfa010076 Carpinus fangiana HOM05D007994 ORTHO05D010092 3.5e-67 259.2 273 52.7
Cc01_g09740 Coffea canephora HOM05D007994 ORTHO05D010092 5.9e-67 258.5 273 49.8
COL.COLO4_19306 Corchorus olitorius HOM05D007994 ORTHO05D010092 1.0e-66 257.7 273 50.9
Duzib170G0069 Durio zibethinus HOM05D007994 ORTHO05D010092 3.8e-66 255.8 270 51.5
Aqoxy4G02880 Aquilegia oxysepala HOM05D007994 ORTHO05D010092 6.5e-66 255.0 257 52.5
CiPaw.13G140400 Carya illinoinensis HOM05D007994 ORTHO05D010092 8.5e-66 254.6 267 50.2
Gorai.006G110000 Gossypium raimondii HOM05D007994 ORTHO05D010092 1.5e-65 253.8 245 55.5
Gohir.A09G093700 Gossypium hirsutum HOM05D007994 ORTHO05D010092 1.9e-65 253.4 271 51.7
Gohir.D09G093400 Gossypium hirsutum HOM05D007994 ORTHO05D010092 8.0e-64 248.1 271 51.7
Haze_23442 Corylus avellana HOM05D007994 ORTHO05D010092 2.4e-60 236.5 246 52.8
QL01p013577 Quercus lobata HOM05D007994 ORTHO05D010092 7.0e-60 235.0 216 56.0
Atru.chr3.3364 Acer truncatum HOM05D007994 ORTHO05D010092 6.1e-56 221.9 266 50.0
MSTRG.12356 Avicennia marina HOM05D007994 ORTHO05D010092 8.9e-55 218.0 272 43.0
PSO384G4503 Papaver somniferum HOM05D007994 ORTHO05D010092 2.0e-54 216.9 242 46.3
Lalb_Chr19g0136731 Lupinus albus HOM05D007994 ORTHO05D010092 4.9e-53 212.2 268 43.3
THA.LOC104814803 Tarenaya hassleriana HOM05D007994 ORTHO05D010092 1.2e-51 207.6 266 45.5
CANSAT54G1189 Cannabis sativa HOM05D007994 ORTHO05D010092 2.0e-51 206.8 257 46.7
Glyma.11G188500 Glycine max HOM05D007994 ORTHO05D010092 2.9e-50 203.0 266 44.4
Prupe.6G120200 Prunus persica HOM05D007994 ORTHO05D010092 1.6e-48 197.2 272 44.9
MD03G1135900 Malus domestica HOM05D007994 ORTHO05D010092 1.0e-47 194.5 276 45.7
Phvul.011G091200 Phaseolus vulgaris HOM05D007994 ORTHO05D010092 1.4e-47 194.1 261 43.3
Lj3g0008283 Lotus japonicus HOM05D007994 ORTHO05D010092 1.8e-47 193.7 281 40.6
VMungo1080G0008 Vigna mungo HOM05D007994 ORTHO05D010092 1.2e-46 191.0 285 38.2
RcHm_v2.0_Chr5g0054991 Rosa chinensis HOM05D007994 ORTHO05D010092 1.3e-42 177.6 273 41.4
PGSC0003DMG400026538 Solanum tuberosum HOM05D007994 ORTHO05D010092 2.2e-37 160.2 268 38.4
FAN16G1405 Fragaria x ananassa HOM05D007994 ORTHO05D010092 1.6e-35 154.1 272 36.4
Solyc11g066940.2 Solanum lycopersicum HOM05D007994 ORTHO05D010092 3.7e-29 132.9 265 35.8
Phvul.005G126500 Phaseolus vulgaris HOM05D007994 ORTHO05D010092 7.1e-28 128.6 127 46.5
GSVIVG01031390001 Vitis vinifera HOM05D007994 ORTHO05D010092 2.7e-27 126.7 97 58.8
Migut.N02511 Erythranthe guttata HOM05D007994 ORTHO05D010092 1.7e-26 124.0 263 33.1
FAN11G1628 Fragaria x ananassa HOM05D007994 ORTHO05D010092 1.7e-26 124.0 235 37.4
Nn2g14036 Nelumbo nucifera HOM05D007994 ORTHO05D010092 3.9e-26 122.9 100 57.0
Eucgr.J00433 Eucalyptus grandis HOM05D007994 ORTHO05D010092 1.1e-25 121.3 125 48.0
SEGI_15329 Sequoiadendron giganteum HOM05D007994 ORTHO05D010092 1.5e-25 120.9 297 33.3
PSO339G3278 Papaver somniferum HOM05D007994 ORTHO05D010092 4.3e-25 119.4 119 45.4
vmacro14359 Vaccinium macrocarpon HOM05D007994 ORTHO05D010092 4.3e-25 119.4 115 52.2
CSS0019289 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.8e-24 116.7 124 54.8
VMungo1127G0625 Vigna mungo HOM05D007994 ORTHO05D010092 2.8e-24 116.7 111 50.5
Peaxi162Scf00002g05422 Petunia axillaris HOM05D007994 ORTHO05D010092 8.1e-24 115.2 267 31.1
PGR119G1356 Punica granatum HOM05D007994 ORTHO05D010092 4.9e-21 105.9 149 41.6
SalBow3G1236 Salvia bowleyana HOM05D007994 ORTHO05D010092 7.1e-20 102.1 262 29.4
Ciclev10029500m.g Citrus clementina HOM05D007994 ORTHO05D010092 1.2e-19 101.3 97 51.5
Rhsim01G0207500 Rhododendron simsii HOM05D007994 ORTHO05D010092 1.6e-19 100.9 74 58.1
Actinidia35451 Actinidia chinensis HOM05D000078 ORTHO05D010092 3.5e-19 99.8 69 59.4
Sopen11g026660 Solanum pennellii HOM05D007994 ORTHO05D010092 7.8e-19 98.6 92 53.3
BcaC01g02012 Brassica carinata HOM05D007994 ORTHO05D010092 2.1e-16 90.5 240 30.4
C03p69540 Brassica napus HOM05D007994 ORTHO05D010092 2.1e-16 90.5 240 30.4
BolC3t19209H Brassica oleracea HOM05D007994 ORTHO05D010092 2.1e-16 90.5 240 30.4
A06p21760 Brassica napus HOM05D007994 ORTHO05D010092 2.8e-16 90.1 240 30.0
BraA06t25263Z Brassica rapa HOM05D007994 ORTHO05D010092 2.8e-16 90.1 240 30.0
Rhsim12G0093900 Rhododendron simsii HOM05D007994 ORTHO05D010092 1.2e-14 84.7 61 59.0
Oeu058281.1 Olea europaea HOM05D007994 ORTHO05D010092 2.6e-14 83.6 66 54.5
TPR.G15591 Trifolium pratense HOM05D007994 ORTHO05D010092 1.1e-12 78.2 68 51.5
ATR0820G083 Amborella trichopoda HOM05D007994 ORTHO05D010092 2.7e-11 73.6 57 47.4
Medtr4g055130 Medicago truncatula HOM05D007994 ORTHO05D010092 2.7e-11 73.6 64 45.3
BcaB01g01144 Brassica carinata HOM05D007994 ORTHO05D010092 3.5e-11 73.2 45 60.0
AL5G22890 Arabidopsis lyrata HOM05D007994 ORTHO05D010092 1.7e-10 70.9 49 53.1
Carub.0005s1038 Capsella rubella HOM05D007994 ORTHO05D010092 1.7e-10 70.9 49 53.1
Carub.0015s0006 Capsella rubella HOM05D007994 ORTHO05D010092 1.7e-10 70.9 49 53.1
HanXRQChr17g0544541 Helianthus annuus HOM05D003287 ORTHO05D003688 6.6e-10 68.9 240 26.2
CARHR151480 Cardamine hirsuta HOM05D007994 ORTHO05D010092 8.7e-10 68.6 70 44.3
Sp5g16480 Schrenkiella parvula HOM05D007994 ORTHO05D010092 1.5e-09 67.8 49 51.0
AT3G44716 Arabidopsis thaliana HOM05D007994 ORTHO05D010092 4.3e-09 66.2 71 40.8
Solyc05g006700.4 Solanum lycopersicum HOM05D003287 ORTHO05D003688 4.3e-09 66.2 246 26.8
Duzib248G0322 Durio zibethinus HOM05D003287 ORTHO05D003688 7.3e-09 65.5 248 27.8
CAN.G27.49 Capsicum annuum HOM05D003287 ORTHO05D003688 1.6e-08 64.3 230 27.0
Peaxi162Scf00209g00931 Petunia axillaris HOM05D003287 ORTHO05D003688 1.6e-08 64.3 240 25.4
Sc04g0008570 Simmondsia chinensis HOM05D003287 ORTHO05D003688 2.1e-08 63.9 235 27.2
Duzib251G0030 Durio zibethinus HOM05D003287 ORTHO05D003688 2.8e-08 63.5 237 29.1
PGSC0003DMG400022598 Solanum tuberosum HOM05D003287 ORTHO05D003688 2.8e-08 63.5 236 25.4
Sopen05g002650 Solanum pennellii HOM05D003287 ORTHO05D003688 3.6e-08 63.2 243 26.3
Gohir.A03G145300 Gossypium hirsutum HOM05D003287 ORTHO05D003688 6.2e-08 62.4 231 28.1
Gorai.005G189100 Gossypium raimondii HOM05D003287 ORTHO05D003688 6.2e-08 62.4 231 28.1
FvH4_4g35530 Fragaria vesca HOM05D003287 ORTHO05D003688 8.1e-08 62.0 245 26.5
Nitab4.5_0000408g0030 Nicotiana tabacum HOM05D003287 ORTHO05D003688 8.1e-08 62.0 230 26.1
TWI18G0836 Tripterygium wilfordii HOM05D003287 ORTHO05D003688 8.1e-08 62.0 245 27.8
MD11G1158400 Malus domestica HOM05D007994 ORTHO05D010092 1.1e-07 61.6 87 44.8
Prupe.3G121800 Prunus persica HOM05D003287 ORTHO05D003688 1.4e-07 61.2 233 27.0
FAN07G0260 Fragaria x ananassa HOM05D003287 ORTHO05D003688 2.4e-07 60.5 239 26.4
TWI75G1209 Tripterygium wilfordii HOM05D003287 ORTHO05D003688 2.4e-07 60.5 304 24.7
FAN22G2046 Fragaria x ananassa HOM05D003287 ORTHO05D003688 3.1e-07 60.1 236 26.7
Psat7g190280 Pisum sativum HOM05D007994 ORTHO05D010092 4.0e-07 59.7 53 43.4
Cc11_g13740 Coffea canephora HOM05D003287 ORTHO05D003688 6.9e-07 58.9 228 26.3
FAN12G3100 Fragaria x ananassa HOM05D003287 ORTHO05D003688 6.9e-07 58.9 236 27.1
RcHm_v2.0_Chr4g0445181 Rosa chinensis HOM05D003287 ORTHO05D003688 6.9e-07 58.9 238 27.3
FAN17G0444 Fragaria x ananassa HOM05D003287 ORTHO05D003688 9.0e-07 58.5 239 25.9
FvH4_4g30030 Fragaria vesca HOM05D003287 ORTHO05D003688 1.2e-06 58.2 236 26.7
Nitab4.5_0002052g0030 Nicotiana tabacum HOM05D003287 ORTHO05D003688 1.2e-06 58.2 237 26.6
Cpa.g.sc5.295 Carica papaya HOM05D003287 ORTHO05D003688 1.5e-06 57.8 239 27.2
TWI09G0698 Tripterygium wilfordii HOM05D002950 ORTHO05D009601 1.5e-06 57.8 274 24.1
CSS0035567 Camellia sinensis var. sinensis HOM05D003287 ORTHO05D003688 2.6e-06 57.0 210 26.2
Sabra10G0120400 Salix brachista HOM05D003287 ORTHO05D003688 2.6e-06 57.0 251 24.7
Hma1.2p1_0265F.1_g106450 Hydrangea macrophylla HOM05D003287 ORTHO05D003688 4.5e-06 56.2 257 27.6
Medtr4g053310 Medicago truncatula HOM05D007994 ORTHO05D010092 4.5e-06 56.2 36 50.0
MD16G1081500 Malus domestica HOM05D003287 ORTHO05D003688 5.8e-06 55.8 229 26.6
MD13G1082400 Malus domestica HOM05D003287 ORTHO05D003688 7.6e-06 55.5 246 25.6
Peaxi162Scf00026g00214 Petunia axillaris HOM05D003287 ORTHO05D003688 7.6e-06 55.5 248 25.8
QL03p066527 Quercus lobata HOM05D003287 ORTHO05D003688 7.6e-06 55.5 237 25.7
ECA246G1951 Erigeron canadensis HOM05D003287 ORTHO05D003688 9.9e-06 55.1 248 23.4
Gorai.013G094000 Gossypium raimondii HOM05D005706 ORTHO05D007474 9.9e-06 55.1 243 23.0


User provided reference genes

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