Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 0.0e+00 1237.2 625 100.0
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 1.4e-308 1062.4 594 91.4
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 6.7e-308 1060.1 565 94.9
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 8.3e-298 1026.5 565 91.0
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 1.3e-255 886.3 566 79.5
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 4.3e-254 881.3 565 77.0
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 2.4e-252 875.5 566 77.6
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 1.2e-251 873.2 566 79.0
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 1.5e-251 872.8 567 77.4
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 5.8e-251 870.9 565 77.9
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 3.8e-250 868.2 566 77.4
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 4.9e-250 867.8 565 78.2
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 1.1e-249 866.7 565 78.1
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 1.9e-249 865.9 566 77.0
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 2.7e-248 862.1 563 76.9
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 4.6e-248 861.3 548 78.3
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 7.8e-248 860.5 563 76.7
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 1.0e-247 860.1 569 76.3
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 3.0e-247 858.6 562 76.5
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 3.9e-247 858.2 634 70.8
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 3.9e-247 858.2 567 77.2
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 8.7e-247 857.1 556 78.1
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 1.5e-246 856.3 556 78.2
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 1.9e-246 855.9 569 76.4
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 2.5e-246 855.5 567 75.8
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 5.6e-246 854.4 566 75.8
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 1.6e-245 852.8 556 78.1
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 2.1e-245 852.4 571 75.3
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 4.8e-245 851.3 561 77.0
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 8.1e-245 850.5 568 76.6
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.8e-244 849.4 566 76.5
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 3.1e-244 848.6 567 75.3
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.1e-244 848.6 556 77.0
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.1e-244 848.6 556 77.2
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 1.2e-243 846.7 556 76.8
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 1.2e-243 846.7 565 75.6
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 5.8e-243 844.3 561 76.3
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 7.6e-243 844.0 567 75.0
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 7.6e-243 844.0 553 76.9
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 9.9e-243 843.6 560 77.0
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.3e-242 843.2 563 76.7
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.3e-242 843.2 559 75.7
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.7e-242 842.8 553 76.7
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 2.2e-242 842.4 568 75.7
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.2e-242 842.4 563 76.7
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 2.2e-242 842.4 560 76.1
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.8e-242 841.6 560 76.8
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 6.4e-242 840.9 553 76.5
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 1.4e-241 839.7 568 75.5
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.0e-239 833.6 576 74.1
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 1.0e-239 833.6 569 74.2
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 1.0e-239 833.6 582 72.7
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 5.1e-239 831.2 584 73.3
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 1.5e-238 829.7 554 76.0
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 4.3e-238 828.2 559 75.5
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 1.6e-237 826.2 566 73.7
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 1.6e-237 826.2 570 73.0
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 6.2e-237 824.3 555 75.3
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 5.3e-236 821.2 557 75.6
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 3.4e-235 818.5 552 74.5
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 5.8e-235 817.8 555 74.6
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 7.6e-235 817.4 607 70.7
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 1.3e-234 816.6 576 72.6
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 3.8e-234 815.1 566 72.8
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 1.1e-233 813.5 555 74.4
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 1.9e-233 812.8 555 74.4
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 3.2e-233 812.0 552 73.7
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 7.1e-233 810.8 576 71.4
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 7.1e-233 810.8 556 73.6
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 2.7e-232 808.9 562 72.4
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 2.7e-232 808.9 544 74.1
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 2.7e-232 808.9 566 73.7
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 4.6e-232 808.1 547 75.0
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 1.3e-231 806.6 566 72.4
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 3.0e-231 805.4 560 73.2
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 5.1e-231 804.7 552 73.9
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 6.7e-231 804.3 565 71.3
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 8.7e-231 803.9 566 73.1
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 4.3e-230 801.6 552 73.4
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 4.3e-230 801.6 555 75.0
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 1.3e-229 800.0 559 72.5
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 2.1e-229 799.3 555 72.4
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.8e-229 798.9 564 73.8
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 4.8e-229 798.1 552 73.4
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 6.2e-229 797.7 590 69.8
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 8.2e-229 797.3 557 73.2
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 8.2e-229 797.3 557 73.2
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 8.2e-229 797.3 577 71.6
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 2.4e-228 795.8 565 72.7
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 5.3e-228 794.7 557 72.9
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.5e-227 793.1 565 71.2
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.0e-227 792.7 554 73.3
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 3.4e-227 792.0 556 72.1
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 8.4e-226 787.3 587 71.0
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 1.2e-224 783.5 534 74.0
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 2.7e-224 782.3 562 71.4
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 4.6e-224 781.6 562 71.4
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 1.0e-223 780.4 554 72.2
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.3e-223 780.0 606 67.2
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 3.9e-223 778.5 573 70.2
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 2.2e-221 772.7 591 68.2
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 4.1e-220 768.5 622 66.6
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 3.4e-219 765.4 551 70.6
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 3.4e-219 765.4 526 72.8
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 2.2e-218 762.7 536 71.3
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 3.2e-217 758.8 555 67.9
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.2e-216 756.9 556 70.9
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.3e-215 753.4 533 72.4
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 6.7e-215 751.1 570 68.1
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 2.5e-214 749.2 555 68.6
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 1.4e-212 743.4 557 69.1
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 9.1e-212 740.7 556 69.1
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 1.2e-211 740.3 557 66.1
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 9.4e-209 730.7 553 67.8
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 1.6e-208 729.9 632 61.4
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 1.7e-205 719.9 580 63.8
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 2.4e-204 716.1 476 75.4
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 1.6e-200 703.4 434 80.9
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 3.8e-194 682.2 562 61.4
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 3.2e-193 679.1 566 63.6
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 3.6e-192 675.6 505 64.8
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 8.0e-192 674.5 477 70.9
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 3.7e-189 665.6 478 69.9
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 1.4e-183 647.1 548 60.0
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 1.8e-175 620.2 562 58.7
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 3.5e-163 579.3 394 73.9
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 2.3e-162 576.6 394 73.1
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.1e-161 574.3 413 70.7
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 2.5e-161 573.2 394 72.8
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 5.4e-156 555.4 359 78.3
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 3.9e-154 549.3 367 74.1
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 4.7e-144 515.8 558 50.2
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 1.4e-132 477.6 535 46.7
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 7.9e-123 445.3 272 79.4
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 1.3e-122 444.5 339 68.4
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 2.1e-107 394.0 336 62.8
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 5.1e-98 362.8 220 79.1
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 1.1e-79 302.0 195 73.3
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 7.7e-78 295.8 200 77.0
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 4.2e-60 236.9 200 63.0
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 7.3e-52 209.5 152 68.4
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.3e-50 204.5 141 72.3
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 4.9e-48 196.8 147 68.7
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 8.9e-42 176.0 189 52.4
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 2.2e-40 171.4 118 69.5
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 4.6e-30 137.1 91 81.3
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 9.9e-25 119.4 83 74.7
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 2.4e-23 114.8 96 60.4
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 7.1e-23 113.2 111 53.2
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 1.5e-20 105.5 92 59.8
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 4.3e-20 104.0 71 69.0
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 4.3e-20 104.0 90 64.4
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 9.9e-09 66.2 55 58.2
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 3.8e-08 64.3 108 37.0
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 5.4e-07 60.5 304 24.3


User provided reference genes

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