Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 5.8e-123 444.1 208 100.0
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 2.9e-106 388.7 209 89.0
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 2.9e-106 388.7 209 89.0
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 2.7e-104 382.1 209 87.6
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 1.1e-94 350.1 194 84.0
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 2.0e-83 312.8 197 75.6
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 1.3e-50 203.8 187 54.0
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 1.6e-48 196.8 208 50.5
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 6.8e-47 191.4 198 51.0
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 1.5e-46 190.3 194 50.0
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 2.2e-45 186.4 208 48.1
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 2.9e-45 186.0 161 54.7
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 2.9e-45 186.0 187 49.2
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 3.7e-45 185.7 184 49.5
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 1.4e-44 183.7 148 58.8
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 1.4e-44 183.7 183 49.7
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 5.4e-44 181.8 208 45.7
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 2.7e-43 179.5 171 53.8
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 7.8e-43 177.9 208 47.6
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 2.3e-42 176.4 162 53.7
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 1.1e-41 174.1 191 48.2
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 1.2e-40 170.6 154 59.1
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 1.6e-40 170.2 165 52.7
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 3.6e-40 169.1 183 47.0
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 6.2e-40 168.3 187 49.2
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 1.4e-39 167.2 194 44.8
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 3.1e-39 166.0 165 52.1
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 1.5e-38 163.7 156 51.3
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 1.5e-38 163.7 148 56.8
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 1.5e-38 163.7 195 47.7
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 3.4e-38 162.5 171 48.0
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 4.4e-38 162.2 173 49.7
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 4.4e-38 162.2 171 49.1
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 4.9e-37 158.7 154 50.0
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 4.9e-37 158.7 154 51.9
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 2.4e-36 156.4 176 46.6
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 4.1e-36 155.6 184 45.1
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 4.1e-36 155.6 161 50.3
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 9.2e-36 154.5 167 47.9
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 9.2e-36 154.5 186 45.7
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 1.6e-35 153.7 191 45.5
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 2.1e-35 153.3 169 47.9
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 2.1e-35 153.3 186 46.8
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 3.5e-35 152.5 182 42.9
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 1.3e-34 150.6 152 48.0
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 2.3e-34 149.8 162 46.9
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 3.9e-34 149.1 156 50.0
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 5.1e-34 148.7 168 45.2
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 5.1e-34 148.7 186 41.9
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 8.6e-34 147.9 159 48.4
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 8.6e-34 147.9 151 50.3
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 8.6e-34 147.9 187 43.3
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 1.9e-33 146.7 162 46.9
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 1.9e-33 146.7 151 47.0
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 2.5e-33 146.4 197 40.6
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 4.3e-33 145.6 160 46.9
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 4.3e-33 145.6 160 46.9
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 1.2e-32 144.1 148 48.6
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 1.6e-32 143.7 161 47.2
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 2.8e-32 142.9 157 47.8
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 3.6e-32 142.5 200 41.5
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 4.7e-32 142.1 166 44.0
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 1.4e-31 140.6 192 44.3
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 2.4e-31 139.8 195 40.0
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 4.0e-31 139.0 167 46.1
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 5.2e-31 138.7 161 44.1
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 6.8e-31 138.3 156 47.4
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 5.8e-30 135.2 152 47.4
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 5.8e-30 135.2 171 42.1
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 5.8e-30 135.2 175 42.9
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 9.9e-30 134.4 158 47.5
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 1.3e-29 134.0 155 48.4
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 8.4e-29 131.3 147 44.2
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 8.4e-29 131.3 147 44.2
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 1.1e-28 131.0 157 42.7
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 4.2e-28 129.0 158 44.9
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 4.2e-28 129.0 213 39.4
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 5.4e-28 128.6 174 39.7
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 7.1e-28 128.3 160 40.6
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 9.2e-28 127.9 182 39.6
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 2.1e-27 126.7 144 45.1
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 3.5e-27 125.9 209 39.7
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 4.6e-27 125.6 170 38.2
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 4.6e-27 125.6 207 38.6
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 1.7e-26 123.6 143 44.8
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 2.3e-26 123.2 165 41.2
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 3.9e-26 122.5 149 45.6
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 1.1e-25 120.9 167 37.1
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 1.5e-25 120.6 152 38.2
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 3.3e-25 119.4 166 38.6
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 5.6e-25 118.6 138 45.7
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.6e-24 117.1 145 41.4
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 2.8e-24 116.3 164 43.3
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 3.6e-24 115.9 174 36.8
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 3.6e-24 115.9 157 40.8
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 4.7e-24 115.5 166 39.2
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 4.7e-24 115.5 141 42.6
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 8.1e-24 114.8 153 37.9
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.4e-23 114.0 141 41.1
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 1.8e-23 113.6 171 36.8
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 1.8e-23 113.6 147 40.1
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 2.4e-23 113.2 171 38.0
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 3.1e-23 112.8 167 35.3
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 4.0e-23 112.5 171 36.8
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 5.3e-23 112.1 171 36.8
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 5.3e-23 112.1 171 36.8
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 9.0e-23 111.3 144 38.9
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 1.2e-22 110.9 168 36.3
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.5e-22 110.5 149 41.6
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 2.0e-22 110.2 147 40.1
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 2.6e-22 109.8 148 41.9
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 3.4e-22 109.4 141 38.3
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 3.4e-22 109.4 148 41.9
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 5.8e-22 108.6 143 40.6
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 7.6e-22 108.2 168 38.1
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 7.6e-22 108.2 168 38.1
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 9.9e-22 107.8 167 36.5
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 9.9e-22 107.8 167 36.5
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 9.9e-22 107.8 163 38.0
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 1.3e-21 107.5 145 41.4
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 2.2e-21 106.7 174 37.4
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 2.2e-21 106.7 102 51.0
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 2.2e-21 106.7 149 40.9
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 1.1e-20 104.4 144 38.9
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.1e-20 104.4 178 36.0
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 1.9e-20 103.6 153 37.9
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 1.9e-20 103.6 142 40.8
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 1.9e-20 103.6 168 35.1
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 2.4e-20 103.2 176 35.8
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 3.2e-20 102.8 184 36.4
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 4.2e-20 102.4 144 40.3
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 5.4e-20 102.1 173 35.3
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 5.4e-20 102.1 173 35.8
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 5.4e-20 102.1 173 35.3
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 7.1e-20 101.7 145 40.0
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 7.1e-20 101.7 151 38.4
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 9.3e-20 101.3 182 35.2
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 9.3e-20 101.3 136 41.2
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 1.2e-19 100.9 146 36.3
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 1.2e-19 100.9 167 35.9
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 1.2e-19 100.9 198 35.4
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 1.6e-19 100.5 182 35.2
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 2.1e-19 100.1 143 39.9
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 2.1e-19 100.1 136 41.2
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 2.1e-19 100.1 136 41.2
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 2.7e-19 99.8 176 34.7
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 3.5e-19 99.4 151 39.1
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 3.5e-19 99.4 181 32.0
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 7.8e-19 98.2 146 39.0
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 7.8e-19 98.2 174 36.8
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 1.0e-18 97.8 171 33.9
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 1.3e-18 97.4 183 34.4
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 1.3e-18 97.4 184 34.2
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 1.3e-18 97.4 154 38.3
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.7e-18 97.1 148 37.8
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 3.0e-18 96.3 178 36.0
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 3.9e-18 95.9 137 40.1
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 5.1e-18 95.5 120 45.0
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 6.6e-18 95.1 136 41.9
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 1.1e-17 94.4 136 40.4
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 1.9e-17 93.6 171 33.3
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 2.5e-17 93.2 145 40.0
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 3.3e-17 92.8 145 37.2
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 3.3e-17 92.8 136 38.2
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 1.3e-16 90.9 138 35.5
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 6.2e-16 88.6 167 32.9
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 6.2e-16 88.6 136 38.2
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 4.0e-15 85.9 136 38.2
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 1.5e-14 84.0 126 39.7
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 2.0e-14 83.6 136 38.2
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 2.0e-14 83.6 136 38.2
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 2.6e-14 83.2 96 40.6
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 2.6e-14 83.2 116 40.5
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 3.4e-14 82.8 136 38.2
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 3.4e-14 82.8 136 38.2
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 3.4e-14 82.8 136 38.2
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 7.9e-11 71.6 93 40.9
SEGI_28043 Sequoiadendron giganteum HOM05D003761 ORTHO05D004412 8.7e-10 68.2 116 35.3
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 4.3e-09 65.9 90 41.1
SEGI_00399 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 7.4e-09 65.1 129 32.6
RcHm_v2.0_Chr5g0000571 Rosa chinensis HOM05D003761 ORTHO05D004412 9.6e-09 64.7 68 50.0
Prupe.7G122800 Prunus persica HOM05D007206 ORTHO05D009176 4.0e-07 59.3 106 32.1
SEGI_39801 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 2.6e-06 56.6 128 27.3
SEGI_30342 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 3.4e-06 56.2 128 27.3
ATR0580G453 Amborella trichopoda HOM05D007206 ORTHO05D009176 5.8e-06 55.5 96 35.4
C09p61320 Brassica napus HOM05D003328 ORTHO05D003722 7.6e-06 55.1 119 31.9
BolC9t58973H Brassica oleracea HOM05D003328 ORTHO05D003722 7.6e-06 55.1 119 31.9
Cpa.g.sc27.233 Carica papaya HOM05D003761 ORTHO05D004412 9.9e-06 54.7 38 52.6


User provided reference genes

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