Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 6.4e-285 983.4 499 100.0
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.4e-271 939.1 503 95.4
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 4.5e-254 880.9 504 89.7
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 3.9e-242 841.3 496 84.9
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 4.1e-191 671.8 393 87.8
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 1.1e-186 657.1 497 67.8
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 1.8e-186 656.4 493 67.1
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 4.6e-182 641.7 494 65.4
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 7.3e-180 634.4 494 65.8
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 6.2e-179 631.3 500 65.0
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 5.2e-178 628.2 491 64.4
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 2.6e-177 625.9 499 63.7
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 2.6e-177 625.9 497 64.4
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 3.4e-177 625.5 495 64.2
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.3e-176 623.6 491 63.7
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 8.3e-176 620.9 499 65.7
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 1.1e-175 620.5 487 64.3
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 2.4e-175 619.4 503 62.6
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 2.7e-174 615.9 493 65.3
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 1.9e-172 609.8 495 63.2
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 4.3e-172 608.6 499 62.9
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 1.2e-171 607.1 497 63.0
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.6e-171 606.7 510 63.5
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 6.2e-171 604.7 485 63.7
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 8.1e-171 604.4 491 64.0
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 2.4e-170 602.8 500 62.6
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 8.9e-170 600.9 498 62.0
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 8.9e-170 600.9 507 61.3
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 1.2e-169 600.5 503 61.8
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 2.0e-169 599.7 497 61.4
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 5.8e-169 598.2 517 60.7
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 5.8e-169 598.2 499 62.7
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 9.9e-169 597.4 505 62.0
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 9.9e-169 597.4 505 62.0
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 2.2e-168 596.3 494 63.0
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 2.9e-168 595.9 504 61.5
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 3.8e-168 595.5 504 61.3
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 1.4e-167 593.6 490 62.7
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 1.9e-167 593.2 491 61.7
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 1.9e-167 593.2 492 61.6
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 9.3e-167 590.9 490 62.2
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 1.6e-166 590.1 497 61.2
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 2.1e-166 589.7 490 63.1
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 1.3e-165 587.0 498 61.4
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 1.3e-165 587.0 498 61.4
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 2.3e-165 586.3 491 62.3
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 1.5e-164 583.6 497 61.4
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 1.9e-164 583.2 504 59.1
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 2.5e-164 582.8 491 61.9
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 3.3e-164 582.4 514 60.5
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 1.6e-163 580.1 491 62.1
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 2.8e-163 579.3 492 61.0
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 4.8e-163 578.6 504 60.9
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 5.3e-162 575.1 496 59.3
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 9.0e-162 574.3 503 58.6
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 2.6e-161 572.8 486 60.1
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 3.4e-161 572.4 503 58.6
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 4.4e-161 572.0 495 60.8
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 5.8e-161 571.6 489 61.8
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 7.6e-161 571.2 508 59.6
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 2.2e-160 569.7 500 59.0
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 4.9e-160 568.5 492 61.8
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 8.4e-160 567.8 502 57.8
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 1.9e-159 566.6 507 57.8
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 3.2e-159 565.8 492 60.6
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 7.1e-159 564.7 462 62.8
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 3.0e-157 559.3 490 59.0
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 3.9e-157 558.9 535 55.5
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 1.5e-156 557.0 499 58.1
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 7.3e-156 554.7 493 57.6
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 1.3e-155 553.9 564 55.0
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 1.6e-155 553.5 493 58.8
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 1.1e-154 550.8 503 56.9
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 3.1e-154 549.3 492 59.1
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 2.0e-153 546.6 498 58.8
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 4.5e-153 545.4 490 57.8
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 1.6e-150 537.0 509 56.4
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 2.7e-150 536.2 431 64.7
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 7.9e-150 534.6 442 61.8
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 4.3e-148 528.9 452 61.5
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 9.6e-148 527.7 505 57.4
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 1.1e-146 524.2 440 60.9
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 7.6e-145 518.1 475 57.1
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 2.2e-144 516.5 439 62.0
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.4e-143 513.8 465 59.8
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 2.1e-142 510.0 492 55.7
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 2.3e-141 506.5 458 59.0
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 1.2e-137 494.2 491 55.8
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 1.7e-136 490.3 439 57.6
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 2.9e-136 489.6 479 55.5
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 9.3e-135 484.6 488 54.3
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 6.7e-133 478.4 396 62.9
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 1.9e-132 476.9 474 55.3
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 7.4e-132 474.9 393 63.4
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 1.4e-117 427.6 347 63.1
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.3e-115 421.0 487 49.7
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.8e-115 419.9 354 61.3
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 1.8e-114 417.2 392 55.9
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 1.8e-114 417.2 351 62.4
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 1.6e-110 404.1 434 49.8
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 2.1e-110 403.7 387 55.0
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 2.3e-109 400.2 497 44.7
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 8.8e-109 398.3 503 48.1
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 1.3e-107 394.4 574 43.4
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 1.7e-107 394.0 393 55.0
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 1.7e-107 394.0 336 59.8
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 3.5e-105 386.3 500 44.8
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 3.8e-104 382.9 484 48.1
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 5.0e-104 382.5 338 58.6
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 2.2e-99 367.1 336 56.5
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.0e-93 348.2 272 64.0
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 4.0e-93 346.3 493 42.8
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 8.8e-93 345.1 370 52.4
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 2.8e-91 340.1 258 68.6
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 4.9e-91 339.3 291 61.2
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 1.6e-89 334.3 327 55.0
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.6e-86 324.3 369 48.0
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 6.8e-85 318.9 579 39.2
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 4.1e-82 309.7 234 70.5
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 1.2e-81 308.1 292 53.8
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 2.0e-81 307.4 237 67.5
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 2.8e-78 297.0 244 63.1
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 3.7e-75 286.6 243 59.3
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 6.0e-73 279.3 362 46.1
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.9e-67 259.6 215 59.5
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.8e-62 243.8 164 71.3
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.1e-61 240.4 216 55.6
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 8.9e-61 238.8 221 55.7
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 4.1e-58 229.9 176 63.6
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 1.2e-57 228.4 176 69.3
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.7e-57 227.3 358 40.2
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 2.8e-54 217.2 272 48.2
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 5.8e-52 209.5 392 38.3
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 8.4e-51 205.7 204 53.4
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 5.1e-48 196.4 206 51.9
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 1.1e-45 188.7 145 62.1
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 2.4e-45 187.6 503 31.8
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 3.4e-44 183.7 211 49.3
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.9e-39 167.9 179 52.5
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 2.0e-36 157.9 161 51.6
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 1.3e-30 138.7 104 71.2
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 1.6e-30 138.3 482 28.2
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 4.8e-30 136.7 592 27.7
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 3.4e-28 130.6 126 59.5
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 1.3e-27 128.6 105 63.8
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 1.1e-26 125.6 113 61.9
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.4e-26 125.2 112 61.6
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.1e-25 121.3 119 58.8
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 1.8e-24 118.2 147 42.9
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 3.2e-18 97.4 61 65.6
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 4.2e-18 97.1 64 76.6
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.3e-16 91.3 85 58.8
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 5.1e-16 90.1 186 38.2
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 5.1e-16 90.1 79 59.5
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 4.3e-15 87.0 97 54.6
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.1e-13 82.4 78 56.4
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.9e-13 79.7 78 51.3
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.5e-12 78.6 75 58.7
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 1.7e-11 75.1 85 45.9
Atru.chr10.196 Acer truncatum HOM05D004308 ORTHO05D005139 3.2e-10 70.9 54 61.1
Atru.chr10.219 Acer truncatum HOM05D004308 ORTHO05D005139 3.9e-08 63.9 134 38.8
AUR62037285 Chenopodium quinoa HOM05D004308 ORTHO05D005139 5.1e-08 63.5 38 76.3


User provided reference genes

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