Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G010070 Citrullus lanatus HOM05D007099 ORTHO05D009081 1.0e-143 513.5 270 100.0
ClCG03G010420 Citrullus lanatus HOM05D055850 ORTHO05D149867 8.9e-39 164.9 178 51.7
ClCG06G009830 Citrullus lanatus HOM05D009184 ORTHO05D015610 4.1e-36 156.0 136 66.9
ClCG08G008070 Citrullus lanatus HOM05D007099 ORTHO05D009081 1.9e-28 130.6 77 87.0
Sed0026927 Sechium edule HOM05D007099 ORTHO05D009081 7.8e-27 125.2 71 85.9
MELO3C019879.2 Cucumis melo HOM05D007099 ORTHO05D009081 3.0e-26 123.2 77 80.5
CsaV3_2G032930 Cucumis sativus L. HOM05D007099 ORTHO05D009081 3.3e-25 119.8 77 77.9
ClCG09G012510 Citrullus lanatus HOM05D009184 ORTHO05D015610 1.5e-22 110.9 80 77.5
Aqoxy12s037 Aquilegia oxysepala HOM05D007099 ORTHO05D009081 3.4e-22 109.8 70 72.9
EL10Ac3g05283 Beta vulgaris HOM05D007099 ORTHO05D009081 5.8e-22 109.0 71 71.8
Cc11_g04750 Coffea canephora HOM05D007099 ORTHO05D009081 2.2e-21 107.1 71 70.4
Lj2P1221T100 Lonicera japonica HOM05D007099 ORTHO05D009081 2.9e-21 106.7 70 70.0
Hund03588 Selenicereus undatus HOM05D007099 ORTHO05D009081 2.9e-21 106.7 71 70.4
CANSAT56G2898 Cannabis sativa HOM05D007099 ORTHO05D009081 3.7e-21 106.3 89 60.7
Manes.15G073400 Manihot esculenta HOM05D007099 ORTHO05D009081 3.7e-21 106.3 77 67.5
Hund07474 Selenicereus undatus HOM05D007099 ORTHO05D009081 3.7e-21 106.3 71 69.0
Gorai.001G161900 Gossypium raimondii HOM05D007099 ORTHO05D009081 4.9e-21 105.9 71 69.0
MD07G1069700 Malus domestica HOM05D007099 ORTHO05D009081 6.4e-21 105.5 70 71.4
MD07G1070600 Malus domestica HOM05D007099 ORTHO05D009081 6.4e-21 105.5 70 71.4
Prupe.2G087000 Prunus persica HOM05D007099 ORTHO05D009081 6.4e-21 105.5 70 71.4
Prupe.2G087700 Prunus persica HOM05D007099 ORTHO05D009081 6.4e-21 105.5 70 71.4
Prupe.8G094900 Prunus persica HOM05D007099 ORTHO05D009081 6.4e-21 105.5 70 71.4
Peaxi162Scf01092g00115 Petunia axillaris HOM05D007099 ORTHO05D009081 8.3e-21 105.1 86 59.3
COL.COLO4_06718 Corchorus olitorius HOM05D007099 ORTHO05D009081 1.1e-20 104.8 70 70.0
MD03G1252400 Malus domestica HOM05D007099 ORTHO05D009081 1.4e-20 104.4 70 70.0
Rhsim11G0096700 Rhododendron simsii HOM05D007099 ORTHO05D009081 1.4e-20 104.4 71 67.6
CAN.G371.64 Capsicum annuum HOM05D007099 ORTHO05D009081 1.9e-20 104.0 86 59.3
CARHR128610 Cardamine hirsuta HOM05D007099 ORTHO05D009081 1.9e-20 104.0 82 59.8
CiPaw.13G036200 Carya illinoinensis HOM05D007099 ORTHO05D009081 1.9e-20 104.0 71 70.4
Nitab4.5_0000068g0330 Nicotiana tabacum HOM05D007099 ORTHO05D009081 2.4e-20 103.6 70 70.0
Nitab4.5_0012613g0010 Nicotiana tabacum HOM05D007099 ORTHO05D009081 2.4e-20 103.6 70 70.0
Thhalv10017324m.g Eutrema salsugineum HOM05D007099 ORTHO05D009081 4.1e-20 102.8 82 59.8
THA.LOC104825605 Tarenaya hassleriana HOM05D007099 ORTHO05D009081 5.4e-20 102.4 70 70.0
Aa31LG1G28210 Aethionema arabicum HOM05D007099 ORTHO05D009081 7.1e-20 102.1 70 70.0
Potri.001G424950 Populus trichocarpa HOM05D007099 ORTHO05D009081 9.2e-20 101.7 70 68.6
AL4G30490 Arabidopsis lyrata HOM05D007099 ORTHO05D009081 1.2e-19 101.3 82 58.5
AT2G34520 Arabidopsis thaliana HOM05D007099 ORTHO05D009081 1.2e-19 101.3 82 58.5
BcaB06g28779 Brassica carinata HOM05D007099 ORTHO05D009081 1.2e-19 101.3 82 58.5
BcaC02g11514 Brassica carinata HOM05D007099 ORTHO05D009081 1.2e-19 101.3 82 58.5
A04p26440 Brassica napus HOM05D007099 ORTHO05D009081 1.2e-19 101.3 82 58.5
A05p11160 Brassica napus HOM05D007099 ORTHO05D009081 1.2e-19 101.3 82 58.5
C04p14510 Brassica napus HOM05D007099 ORTHO05D009081 1.2e-19 101.3 82 58.5
C04p63850 Brassica napus HOM05D007099 ORTHO05D009081 1.2e-19 101.3 82 58.5
BolC4t23034H Brassica oleracea HOM05D007099 ORTHO05D009081 1.2e-19 101.3 82 58.5
BraA04t18148Z Brassica rapa HOM05D007099 ORTHO05D009081 1.2e-19 101.3 82 58.5
BraA05t20062Z Brassica rapa HOM05D007099 ORTHO05D009081 1.2e-19 101.3 82 58.5
Sp4g16780 Schrenkiella parvula HOM05D007099 ORTHO05D009081 1.2e-19 101.3 82 58.5
Solyc04g079380.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 1.2e-19 101.3 86 57.0
Sopen04g032990 Solanum pennellii HOM05D007099 ORTHO05D009081 1.2e-19 101.3 86 57.0
PGSC0003DMG400007997 Solanum tuberosum HOM05D007099 ORTHO05D009081 1.2e-19 101.3 86 57.0
BcaB02g09535 Brassica carinata HOM05D007099 ORTHO05D009081 1.6e-19 100.9 105 50.5
BolC4t27852H Brassica oleracea HOM05D007099 ORTHO05D009081 1.6e-19 100.9 104 50.0
Carub.0004s1619 Capsella rubella HOM05D007099 ORTHO05D009081 1.6e-19 100.9 82 58.5
FvH4_7g06080 Fragaria vesca HOM05D007099 ORTHO05D009081 1.6e-19 100.9 76 64.5
BcaB02g09534 Brassica carinata HOM05D007099 ORTHO05D009081 2.1e-19 100.5 82 57.3
FAN16G1526 Fragaria x ananassa HOM05D007099 ORTHO05D009081 2.1e-19 100.5 70 68.6
RcHm_v2.0_Chr1g0333591 Rosa chinensis HOM05D007099 ORTHO05D009081 2.1e-19 100.5 70 68.6
RcHm_v2.0_Chr5g0056441 Rosa chinensis HOM05D007099 ORTHO05D009081 2.1e-19 100.5 70 70.0
FAN06G3861 Fragaria x ananassa HOM05D007099 ORTHO05D009081 2.7e-19 100.1 70 68.6
FAN10G1031 Fragaria x ananassa HOM05D007099 ORTHO05D009081 2.7e-19 100.1 70 68.6
Zm00001eb261270 Zea mays HOM05D002252 ORTHO05D002451 2.7e-19 100.1 70 71.4
FAN12G2091 Fragaria x ananassa HOM05D007099 ORTHO05D009081 3.5e-19 99.8 70 67.1
Ah.07g205590 Amaranthus hybridus HOM05D007099 ORTHO05D009081 4.6e-19 99.4 71 64.8
TPR.G27292 Trifolium pratense HOM05D007099 ORTHO05D009081 7.8e-19 98.6 70 67.1
Cfa011224 Carpinus fangiana HOM05D007099 ORTHO05D009081 1.3e-18 97.8 77 62.3
Haze_02608 Corylus avellana HOM05D007099 ORTHO05D009081 1.3e-18 97.8 77 62.3
HanXRQChr10g0308131 Helianthus annuus HOM05D007099 ORTHO05D009081 1.3e-18 97.8 71 67.6
arahy.Tifrunner.gnm1.ann1.5L8EUV Arachis hypogaea HOM05D007099 ORTHO05D009081 1.7e-18 97.4 70 65.7
Cfa011223 Carpinus fangiana HOM05D007099 ORTHO05D009081 1.7e-18 97.4 77 62.3
AUR62006089 Chenopodium quinoa HOM05D007099 ORTHO05D009081 1.7e-18 97.4 71 63.4
AUR62019404 Chenopodium quinoa HOM05D007099 ORTHO05D009081 1.7e-18 97.4 71 63.4
FvH4_3g30490 Fragaria vesca HOM05D007099 ORTHO05D009081 1.7e-18 97.4 70 67.1
FAN11G0918 Fragaria x ananassa HOM05D007099 ORTHO05D009081 1.7e-18 97.4 70 67.1
Lsat_1_v5_gn_9_15021 Lactuca sativa HOM05D007099 ORTHO05D009081 1.7e-18 97.4 71 67.6
VMungo0647G1684 Vigna mungo HOM05D007099 ORTHO05D009081 1.7e-18 97.4 70 65.7
Sabra16G0287600 Salix brachista HOM05D007099 ORTHO05D009081 2.3e-18 97.1 70 64.3
Lalb_Chr00c21g0405211 Lupinus albus HOM05D007099 ORTHO05D009081 3.0e-18 96.7 70 65.7
Lalb_Chr00c21g0405401 Lupinus albus HOM05D007099 ORTHO05D009081 3.0e-18 96.7 70 65.7
Lalb_Chr00c24g0407161 Lupinus albus HOM05D007099 ORTHO05D009081 3.0e-18 96.7 70 65.7
Gohir.A01G126800 Gossypium hirsutum HOM05D007099 ORTHO05D009081 3.9e-18 96.3 83 59.0
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 6.6e-18 95.5 99 50.5
QL04p041158 Quercus lobata HOM05D007099 ORTHO05D009081 6.6e-18 95.5 77 61.0
QL10p027581 Quercus lobata HOM05D007099 ORTHO05D009081 8.6e-18 95.1 77 59.7
SalBow8G2603 Salvia bowleyana HOM05D007099 ORTHO05D009081 1.5e-17 94.4 70 64.3
Atru.chr1.3070 Acer truncatum HOM05D007099 ORTHO05D009081 2.5e-17 93.6 70 67.1
Atru.chr3.1047 Acer truncatum HOM05D007099 ORTHO05D009081 2.5e-17 93.6 70 67.1
arahy.Tifrunner.gnm1.ann1.BT1F12 Arachis hypogaea HOM05D007099 ORTHO05D009081 3.3e-17 93.2 72 61.1
arahy.Tifrunner.gnm1.ann1.N1QJ6Q Arachis hypogaea HOM05D007099 ORTHO05D009081 3.3e-17 93.2 70 60.0
PSO541G4216 Papaver somniferum HOM05D007099 ORTHO05D009081 4.3e-17 92.8 71 64.8
PSO675G8234 Papaver somniferum HOM05D007099 ORTHO05D009081 4.3e-17 92.8 71 64.8
Glyma.05G091932 Glycine max HOM05D007099 ORTHO05D009081 7.3e-17 92.0 69 63.8
PSO675G5170 Papaver somniferum HOM05D007099 ORTHO05D009081 7.3e-17 92.0 70 64.3
Ciclev10022860m.g Citrus clementina HOM05D007099 ORTHO05D009081 9.5e-17 91.7 70 65.7
PSO541G5582 Papaver somniferum HOM05D007099 ORTHO05D009081 1.6e-16 90.9 71 62.0
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 2.8e-16 90.1 66 65.2
DCAR_014524 Daucus carota HOM05D007099 ORTHO05D009081 3.6e-16 89.7 71 59.2
SHI18971 Sapria himalayana HOM05D007099 ORTHO05D009081 4.7e-16 89.4 70 62.9
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 4.0e-15 86.3 69 58.0
ECA234G1703 Erigeron canadensis HOM05D007099 ORTHO05D009081 5.8e-14 82.4 71 53.5
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 2.9e-13 80.1 80 52.5
Rhsim10G0009600 Rhododendron simsii HOM05D000071 ORTHO05D000029 1.9e-12 77.4 61 60.7
arahy.Tifrunner.gnm1.ann1.HLYH4Q Arachis hypogaea HOM05D007099 ORTHO05D009081 1.2e-11 74.7 52 63.5
Solyc00g500363.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 3.5e-11 73.2 52 63.5
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 6.0e-11 72.4 126 41.3
Nn1g10177 Nelumbo nucifera HOM05D007099 ORTHO05D009081 8.6e-10 68.6 46 69.6
Mapoly0991s0001 Marchantia polymorpha HOM05D007099 ORTHO05D009081 1.2e-08 64.7 46 69.6
Nitab4.5_0004300g0130 Nicotiana tabacum HOM05D002864 ORTHO05D007972 2.1e-08 63.9 39 66.7
ClCG06G009840 Citrullus lanatus HOM05D007099 ORTHO05D151258 3.6e-08 63.2 44 68.2
SMO134G0293 Selaginella moellendorffii HOM05D007099 ORTHO05D009081 4.7e-08 62.8 69 47.8
Lalb_Chr11g0070131 Lupinus albus HOM05D007099 ORTHO05D009081 8.1e-08 62.0 46 65.2
Lalb_Chr11g0070211 Lupinus albus HOM05D007099 ORTHO05D009081 8.1e-08 62.0 46 65.2
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 1.4e-07 61.2 118 38.1
Solyc09g050030.1 Solanum lycopersicum HOM05D007099 ORTHO05D009081 6.8e-07 58.9 46 60.9
Peaxi162Scf44104g00001 Petunia axillaris HOM05D007099 ORTHO05D009081 5.8e-06 55.8 37 67.6


User provided reference genes

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