Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G010010 Citrullus lanatus HOM05D002698 ORTHO05D002903 1.8e-64 249.2 133 100.0
CsaV3_1G018430 Cucumis sativus L. HOM05D002698 ORTHO05D002903 1.1e-42 176.8 105 89.5
MELO3C021699.2 Cucumis melo HOM05D002698 ORTHO05D002903 2.1e-41 172.6 105 89.5
Sed0002138 Sechium edule HOM05D002698 ORTHO05D002903 1.7e-30 136.3 106 77.4
Sed0024160 Sechium edule HOM05D002698 ORTHO05D002903 4.8e-30 134.8 106 76.4
Glyma.15G113900 Glycine max HOM05D002698 ORTHO05D002903 5.0e-19 98.2 102 58.8
Lj6g0023919 Lotus japonicus HOM05D002698 ORTHO05D002903 5.5e-18 94.7 102 59.8
Ca_00713_v3 Cicer arietinum L. HOM05D002698 ORTHO05D002903 1.2e-17 93.6 102 55.9
Glyma.09G009400 Glycine max HOM05D002698 ORTHO05D002903 1.6e-17 93.2 102 55.9
VMungo0540G1252 Vigna mungo HOM05D002698 ORTHO05D002903 1.8e-16 89.7 104 51.9
CiPaw.10G077000 Carya illinoinensis HOM05D002698 ORTHO05D002903 2.3e-16 89.4 100 60.0
arahy.Tifrunner.gnm1.ann1.38NIYD Arachis hypogaea HOM05D002698 ORTHO05D002903 3.0e-16 89.0 102 52.9
arahy.Tifrunner.gnm1.ann1.83IVCD Arachis hypogaea HOM05D002698 ORTHO05D002903 3.0e-16 89.0 102 52.9
Lalb_Chr18g0056901 Lupinus albus HOM05D002698 ORTHO05D002903 4.0e-16 88.6 93 58.1
Phvul.006G143900 Phaseolus vulgaris HOM05D002698 ORTHO05D002903 4.0e-16 88.6 101 54.5
Medtr2g025490 Medicago truncatula HOM05D002698 ORTHO05D002903 1.2e-15 87.0 104 53.8
Haze_06906 Corylus avellana HOM05D002698 ORTHO05D002903 5.7e-15 84.7 124 50.0
Psat1g177000 Pisum sativum HOM05D002698 ORTHO05D002903 7.5e-15 84.3 105 53.3
TPR.G13112 Trifolium pratense HOM05D002698 ORTHO05D002903 4.9e-14 81.6 105 53.3
Duzib235G0585 Durio zibethinus HOM05D002698 ORTHO05D002903 6.3e-14 81.3 95 55.8
QL10p003592 Quercus lobata HOM05D002698 ORTHO05D002903 1.1e-13 80.5 102 52.9
THA.LOC104806327 Tarenaya hassleriana HOM05D002698 ORTHO05D002903 1.4e-13 80.1 95 51.6
Cfa000116 Carpinus fangiana HOM05D002698 ORTHO05D002903 1.8e-13 79.7 102 57.8
FvH4_3g01090 Fragaria vesca HOM05D002698 ORTHO05D002903 3.2e-13 79.0 99 54.5
CSS0002004 Camellia sinensis var. sinensis HOM05D002698 ORTHO05D002903 4.1e-13 78.6 101 53.5
Hma1.2p1_0660F.1_g197560 Hydrangea macrophylla HOM05D002698 ORTHO05D002903 4.1e-13 78.6 102 52.0
Atru.chr1.2479 Acer truncatum HOM05D002698 ORTHO05D002903 7.0e-13 77.8 102 56.9
FAN25G3628 Fragaria x ananassa HOM05D002698 ORTHO05D002903 1.2e-12 77.0 99 52.5
Duzib192G0540 Durio zibethinus HOM05D002698 ORTHO05D002903 2.0e-12 76.3 97 55.7
SalBow1G0917 Salvia bowleyana HOM05D002698 ORTHO05D002903 2.0e-12 76.3 99 46.5
Cpa.g.sc152.68 Carica papaya HOM05D002698 ORTHO05D002903 2.7e-12 75.9 90 56.7
CiPaw.09G101400 Carya illinoinensis HOM05D002698 ORTHO05D002903 3.5e-12 75.5 93 54.8
Manes.16G001101 Manihot esculenta HOM05D002698 ORTHO05D002903 3.5e-12 75.5 101 54.5
Cc09_g00960 Coffea canephora HOM05D002698 ORTHO05D002903 4.5e-12 75.1 100 49.0
Nn1g07341 Nelumbo nucifera HOM05D002698 ORTHO05D002903 4.5e-12 75.1 105 45.7
Prupe.4G012100 Prunus persica HOM05D002698 ORTHO05D002903 4.5e-12 75.1 101 53.5
Lalb_Chr20g0119181 Lupinus albus HOM05D002698 ORTHO05D002903 7.8e-12 74.3 102 57.8
RcHm_v2.0_Chr5g0001661 Rosa chinensis HOM05D002698 ORTHO05D002903 7.8e-12 74.3 100 52.0
FAN21G0791 Fragaria x ananassa HOM05D002698 ORTHO05D002903 1.0e-11 73.9 92 58.7
PGR004G0123 Punica granatum HOM05D002698 ORTHO05D002903 1.0e-11 73.9 80 58.8
THA.LOC104813516 Tarenaya hassleriana HOM05D002698 ORTHO05D002903 1.3e-11 73.6 100 49.0
TAR626G1298 Trochodendron aralioides HOM05D002698 ORTHO05D002903 1.3e-11 73.6 96 54.2
Potri.011G023200 Populus trichocarpa HOM05D002698 ORTHO05D002903 1.7e-11 73.2 81 51.9
MSTRG.14616 Avicennia marina HOM05D002698 ORTHO05D002903 2.3e-11 72.8 108 45.4
TWI63G0242 Tripterygium wilfordii HOM05D002698 ORTHO05D002903 2.9e-11 72.4 96 51.0
Sabra11G0014200 Salix brachista HOM05D002698 ORTHO05D002903 5.0e-11 71.6 106 43.4
A01p13680 Brassica napus HOM05D002698 ORTHO05D002903 6.6e-11 71.2 93 52.7
BraA01t01313Z Brassica rapa HOM05D002698 ORTHO05D002903 6.6e-11 71.2 93 52.7
MSTRG.7172 Avicennia marina HOM05D002698 ORTHO05D002903 8.6e-11 70.9 100 47.0
MSTRG.16018 Avicennia marina HOM05D002698 ORTHO05D002903 1.5e-10 70.1 97 46.4
Thecc.06G231800 Theobroma cacao HOM05D002698 ORTHO05D002903 3.3e-10 68.9 96 52.1
vmacro15775 Vaccinium macrocarpon HOM05D002698 ORTHO05D002903 3.3e-10 68.9 94 52.1
Ciclev10016689m.g Citrus clementina HOM05D002698 ORTHO05D002903 5.6e-10 68.2 96 53.1
Potri.004G001500 Populus trichocarpa HOM05D002698 ORTHO05D002903 7.3e-10 67.8 82 52.4
Sabra04G0000500 Salix brachista HOM05D002698 ORTHO05D002903 2.1e-09 66.2 83 50.6
TWI38G1017 Tripterygium wilfordii HOM05D002698 ORTHO05D002903 2.8e-09 65.9 81 50.6
Eucgr.E03955 Eucalyptus grandis HOM05D002698 ORTHO05D002903 3.6e-09 65.5 85 50.6
Nitab4.5_0001198g0160 Nicotiana tabacum HOM05D002698 ORTHO05D002903 4.7e-09 65.1 99 45.5
Actinidia02321 Actinidia chinensis HOM05D002698 ORTHO05D002903 6.1e-09 64.7 83 54.2
DCAR_027850 Daucus carota HOM05D002698 ORTHO05D002903 6.1e-09 64.7 106 45.3
Gorai.010G250800 Gossypium raimondii HOM05D002698 ORTHO05D002903 6.1e-09 64.7 93 53.8
Actinidia26869 Actinidia chinensis HOM05D002698 ORTHO05D002903 8.0e-09 64.3 79 55.7
Gohir.D06G215500 Gossypium hirsutum HOM05D002698 ORTHO05D002903 8.0e-09 64.3 93 53.8
Nitab4.5_0000143g0370 Nicotiana tabacum HOM05D002698 ORTHO05D002903 8.0e-09 64.3 99 44.4
Gohir.A06G206000 Gossypium hirsutum HOM05D002698 ORTHO05D002903 1.0e-08 63.9 93 55.9
PSO302G0017 Papaver somniferum HOM05D002698 ORTHO05D002903 1.0e-08 63.9 95 45.3
Hund21155 Selenicereus undatus HOM05D002698 ORTHO05D002903 1.0e-08 63.9 105 45.7
Gohir.A10G009700 Gossypium hirsutum HOM05D002698 ORTHO05D002903 1.4e-08 63.5 80 53.8
Gohir.D10G009450 Gossypium hirsutum HOM05D002698 ORTHO05D002903 1.8e-08 63.2 81 51.9
COL.COLO4_31867 Corchorus olitorius HOM05D002698 ORTHO05D002903 2.3e-08 62.8 101 50.5
Rhsim02G0103900 Rhododendron simsii HOM05D002698 ORTHO05D002903 2.3e-08 62.8 92 51.1
Gorai.011G010300 Gossypium raimondii HOM05D002698 ORTHO05D002903 3.1e-08 62.4 80 52.5
Peaxi162Scf00990g00122 Petunia axillaris HOM05D002698 ORTHO05D002903 3.1e-08 62.4 80 56.2
AUR62021875 Chenopodium quinoa HOM05D002698 ORTHO05D002903 5.2e-08 61.6 119 43.7
CSS0045965 Camellia sinensis var. sinensis HOM05D002698 ORTHO05D002903 8.9e-08 60.8 83 47.0
PGSC0003DMG400023559 Solanum tuberosum HOM05D002698 ORTHO05D002903 8.9e-08 60.8 79 53.2
Nitab4.5_0008006g0040 Nicotiana tabacum HOM05D002698 ORTHO05D002903 1.2e-07 60.5 79 50.6
BcaC09g51141 Brassica carinata HOM05D002698 ORTHO05D002903 1.5e-07 60.1 89 48.3
C01p16560 Brassica napus HOM05D002698 ORTHO05D002903 1.5e-07 60.1 89 48.3
BolC1t01606H Brassica oleracea HOM05D002698 ORTHO05D002903 1.5e-07 60.1 89 48.3
BcaNung02502 Brassica carinata HOM05D002698 ORTHO05D002903 2.6e-07 59.3 91 48.4
Oeu049727.2 Olea europaea HOM05D002698 ORTHO05D002903 2.6e-07 59.3 80 52.5
Solyc04g014710.3 Solanum lycopersicum HOM05D002698 ORTHO05D002903 2.6e-07 59.3 79 50.6
Sopen04g006820 Solanum pennellii HOM05D002698 ORTHO05D002903 2.6e-07 59.3 79 50.6
Ah.14g087700 Amaranthus hybridus HOM05D002698 ORTHO05D002903 4.4e-07 58.5 81 51.9
BraA03t14412Z Brassica rapa HOM05D002698 ORTHO05D002903 4.4e-07 58.5 105 42.9
DCAR_002218 Daucus carota HOM05D002698 ORTHO05D002903 4.4e-07 58.5 78 48.7
Duzib160G0780 Durio zibethinus HOM05D002698 ORTHO05D002903 4.4e-07 58.5 85 51.8
PSO210G7768 Papaver somniferum HOM05D002698 ORTHO05D002903 4.4e-07 58.5 95 43.2
CAN.G1263.13 Capsicum annuum HOM05D002698 ORTHO05D002903 5.8e-07 58.2 77 49.4
Oeu044416.1 Olea europaea HOM05D002698 ORTHO05D002903 9.8e-07 57.4 83 43.4
C07p51790 Brassica napus HOM05D002698 ORTHO05D002903 1.7e-06 56.6 91 47.3
MD05G1356800 Malus domestica HOM05D002698 ORTHO05D002903 1.7e-06 56.6 100 42.0
Peaxi162Scf00558g00219 Petunia axillaris HOM05D002698 ORTHO05D002903 2.9e-06 55.8 86 53.5
BcaNung01695 Brassica carinata HOM05D002698 ORTHO05D002903 4.9e-06 55.1 106 41.5
AUR62012780 Chenopodium quinoa HOM05D002698 ORTHO05D002903 4.9e-06 55.1 103 46.6
Dinv07390 Davidia involucrata HOM05D002698 ORTHO05D002903 4.9e-06 55.1 59 64.4
SGA_v2.0_scaffold7G03756 Striga asiatica HOM05D002698 ORTHO05D002903 4.9e-06 55.1 98 41.8
EL10Ac8g20172 Beta vulgaris HOM05D002698 ORTHO05D002903 6.4e-06 54.7 71 47.9
BcaNung03745 Brassica carinata HOM05D002698 ORTHO05D002903 6.4e-06 54.7 99 43.4
TAR629G1840 Trochodendron aralioides HOM05D002698 ORTHO05D002903 6.4e-06 54.7 104 40.4
Ah.09g234290 Amaranthus hybridus HOM05D002698 ORTHO05D002903 8.3e-06 54.3 89 46.1
AT4G22320 Arabidopsis thaliana HOM05D002698 ORTHO05D002903 8.3e-06 54.3 115 41.7
BolC7t45681H Brassica oleracea HOM05D002698 ORTHO05D002903 8.3e-06 54.3 102 43.1


User provided reference genes

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