Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G009570 Citrullus lanatus HOM05D007312 ORTHO05D009209 1.7e-134 482.6 242 100.0
MELO3C021735.2 Cucumis melo HOM05D007312 ORTHO05D009209 4.8e-68 261.9 143 95.1
CsaV3_1G046220 Cucumis sativus L. HOM05D007312 ORTHO05D009209 4.9e-65 251.9 130 97.7
BcaB04g18176 Brassica carinata HOM05D007312 ORTHO05D009209 2.9e-49 199.5 129 77.5
MD05G1250400 Malus domestica HOM05D007312 ORTHO05D009209 2.9e-49 199.5 127 81.1
Potri.012G124500 Populus trichocarpa HOM05D007312 ORTHO05D009209 8.5e-49 198.0 129 79.8
Atru.chr10.560 Acer truncatum HOM05D007312 ORTHO05D009209 1.1e-48 197.6 129 77.5
BraA08t33069Z Brassica rapa HOM05D007312 ORTHO05D009209 2.5e-48 196.4 154 66.9
Sp1g26990 Schrenkiella parvula HOM05D007312 ORTHO05D009209 3.2e-48 196.1 130 77.7
BolC8t48163H Brassica oleracea HOM05D007312 ORTHO05D009209 4.2e-48 195.7 153 67.3
TWI63G0684 Tripterygium wilfordii HOM05D007312 ORTHO05D009209 4.2e-48 195.7 129 78.3
QL11p016282 Quercus lobata HOM05D007312 ORTHO05D009209 5.5e-48 195.3 129 79.1
Duzib052G0161 Durio zibethinus HOM05D007312 ORTHO05D009209 9.4e-48 194.5 130 78.5
Thhalv10009117m.g Eutrema salsugineum HOM05D007312 ORTHO05D009209 1.2e-47 194.1 130 77.7
Gohir.A12G046700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 1.2e-47 194.1 126 79.4
BcaC07g37774 Brassica carinata HOM05D007312 ORTHO05D009209 1.6e-47 193.7 125 79.2
Cc09_g06000 Coffea canephora HOM05D007312 ORTHO05D009209 4.6e-47 192.2 129 78.3
Manes.16G055800 Manihot esculenta HOM05D007312 ORTHO05D009209 6.1e-47 191.8 130 76.9
AT1G31170 Arabidopsis thaliana HOM05D007312 ORTHO05D009209 2.3e-46 189.9 130 76.2
CiPaw.09G076400 Carya illinoinensis HOM05D007312 ORTHO05D009209 2.3e-46 189.9 126 77.8
PGR042G3076 Punica granatum HOM05D007312 ORTHO05D009209 3.0e-46 189.5 119 79.8
CARHR030640 Cardamine hirsuta HOM05D007312 ORTHO05D009209 3.9e-46 189.1 130 76.2
Ciclev10017175m.g Citrus clementina HOM05D007312 ORTHO05D009209 5.1e-46 188.7 130 75.4
A08p10710 Brassica napus HOM05D007312 ORTHO05D009209 8.8e-46 188.0 126 76.2
TPR.G38271 Trifolium pratense HOM05D007312 ORTHO05D009209 8.8e-46 188.0 147 67.3
AL1G49340 Arabidopsis lyrata HOM05D007312 ORTHO05D009209 2.0e-45 186.8 130 74.6
Medtr4g084180 Medicago truncatula HOM05D007312 ORTHO05D009209 2.0e-45 186.8 130 76.2
Nitab4.5_0007745g0050 Nicotiana tabacum HOM05D007312 ORTHO05D009209 3.3e-45 186.0 129 76.0
MSTRG.7597 Avicennia marina HOM05D007312 ORTHO05D009209 4.3e-45 185.7 125 77.6
Carub.0001s2957 Capsella rubella HOM05D007312 ORTHO05D009209 4.3e-45 185.7 124 76.6
CANSAT35G0781 Cannabis sativa HOM05D007312 ORTHO05D009209 5.7e-45 185.3 116 80.2
Aa31LG2G15110 Aethionema arabicum HOM05D007312 ORTHO05D009209 7.4e-45 184.9 107 82.2
Eucgr.E04250 Eucalyptus grandis HOM05D007312 ORTHO05D009209 7.4e-45 184.9 133 72.2
Ca_18754_v3 Cicer arietinum L. HOM05D007312 ORTHO05D009209 1.3e-44 184.1 130 75.4
Sopen02g017880 Solanum pennellii HOM05D007312 ORTHO05D009209 1.3e-44 184.1 129 75.2
PGSC0003DMG400010438 Solanum tuberosum HOM05D007312 ORTHO05D009209 1.3e-44 184.1 129 75.2
Sabra12G0094300 Salix brachista HOM05D007312 ORTHO05D009209 1.7e-44 183.7 124 77.4
Nitab4.5_0001288g0230 Nicotiana tabacum HOM05D007312 ORTHO05D009209 2.8e-44 183.0 129 74.4
SGA_v2.0_scaffold298G47689 Striga asiatica HOM05D007312 ORTHO05D009209 2.8e-44 183.0 129 75.2
ECA234G3951 Erigeron canadensis HOM05D007312 ORTHO05D009209 3.7e-44 182.6 128 71.1
TAR624G0630 Trochodendron aralioides HOM05D007312 ORTHO05D009209 8.2e-44 181.4 115 78.3
Lsat_1_v5_gn_3_106761 Lactuca sativa HOM05D007312 ORTHO05D009209 1.1e-43 181.0 116 80.2
Peaxi162Scf00149g00224 Petunia axillaris HOM05D007312 ORTHO05D009209 1.1e-43 181.0 129 76.7
GSVIVG01012104001 Vitis vinifera HOM05D007312 ORTHO05D009209 1.1e-43 181.0 125 73.6
Hma1.2p1_1005F.1_g246920 Hydrangea macrophylla HOM05D007312 ORTHO05D009209 1.4e-43 180.6 135 72.6
MBI18_g11473_MAGBIO Magnolia biondii HOM05D007312 ORTHO05D009209 1.4e-43 180.6 121 75.2
Os06g0174300 Oryza sativa ssp. japonica HOM05D007312 ORTHO05D009209 1.4e-43 180.6 146 63.7
Solyc02g068710.3 Solanum lycopersicum HOM05D007312 ORTHO05D009209 1.8e-43 180.3 129 74.4
RcHm_v2.0_Chr5g0020311 Rosa chinensis HOM05D007312 ORTHO05D009209 2.4e-43 179.9 131 74.8
Phvul.002G097300 Phaseolus vulgaris HOM05D007312 ORTHO05D009209 4.1e-43 179.1 131 73.3
Glyma.20G019100 Glycine max HOM05D007312 ORTHO05D009209 1.2e-42 177.6 133 72.9
EL10Ac5g12681 Beta vulgaris HOM05D007312 ORTHO05D009209 2.0e-42 176.8 125 73.6
VMungo0251G1106 Vigna mungo HOM05D007312 ORTHO05D009209 2.0e-42 176.8 131 72.5
Zm00001eb375250 Zea mays HOM05D007312 ORTHO05D009209 2.6e-42 176.4 111 76.6
HanXRQChr12g0381571 Helianthus annuus HOM05D007312 ORTHO05D009209 3.4e-42 176.0 128 72.7
CSS0025621 Camellia sinensis var. sinensis HOM05D007312 ORTHO05D009209 4.5e-42 175.6 129 69.8
PSO541G3426 Papaver somniferum HOM05D007312 ORTHO05D009209 4.5e-42 175.6 124 70.2
Actinidia22408 Actinidia chinensis HOM05D007312 ORTHO05D009209 7.7e-42 174.9 115 75.7
Ah.01g020500 Amaranthus hybridus HOM05D007312 ORTHO05D009209 1.3e-41 174.1 120 75.8
CDE02G1125 Ceratophyllum demersum HOM05D007312 ORTHO05D009209 1.3e-41 174.1 129 72.9
SalBow8G4543 Salvia bowleyana HOM05D007312 ORTHO05D009209 2.2e-41 173.3 125 74.4
Hund14701 Selenicereus undatus HOM05D007312 ORTHO05D009209 2.2e-41 173.3 123 75.6
RhsimUnG0109200 Rhododendron simsii HOM05D007312 ORTHO05D009209 8.5e-41 171.4 124 73.4
AUR62010557 Chenopodium quinoa HOM05D007312 ORTHO05D009209 1.9e-40 170.2 111 77.5
FvH4_3g12430 Fragaria vesca HOM05D007312 ORTHO05D009209 1.9e-40 170.2 126 74.6
THA.LOC104798553 Tarenaya hassleriana HOM05D007312 ORTHO05D009209 1.9e-40 170.2 131 70.2
unitig_32.g10991 Utricularia gibba HOM05D000532 ORTHO05D009209 1.9e-40 170.2 98 81.6
Lj4g0021225 Lotus japonicus HOM05D007312 ORTHO05D009209 2.5e-40 169.9 133 70.7
Rhsim13G0146500 Rhododendron simsii HOM05D007312 ORTHO05D009209 5.5e-40 168.7 124 72.6
Lj2A350T56 Lonicera japonica HOM05D007312 ORTHO05D009209 7.2e-40 168.3 107 78.5
Migut.M01988 Erythranthe guttata HOM05D007312 ORTHO05D009209 1.2e-39 167.5 91 85.7
Lalb_Chr16g0385171 Lupinus albus HOM05D007312 ORTHO05D009209 1.2e-39 167.5 129 68.2
Psat7g129800 Pisum sativum HOM05D007312 ORTHO05D009209 7.9e-39 164.9 118 74.6
CAN.G149.9 Capsicum annuum HOM05D007312 ORTHO05D009209 1.0e-38 164.5 91 85.7
HPP92_010212 Vanilla planifolia HOM05D007312 ORTHO05D009209 1.0e-38 164.5 104 80.8
arahy.Tifrunner.gnm1.ann1.FJ5394 Arachis hypogaea HOM05D007312 ORTHO05D009209 1.1e-37 161.0 89 86.5
vmacro03527 Vaccinium macrocarpon HOM05D007312 ORTHO05D009209 1.1e-37 161.0 98 80.6
AUR62017332 Chenopodium quinoa HOM05D007312 ORTHO05D009209 2.0e-37 160.2 111 73.9
arahy.Tifrunner.gnm1.ann1.XDA00H Arachis hypogaea HOM05D007312 ORTHO05D009209 3.3e-37 159.5 126 68.3
Haze_06075 Corylus avellana HOM05D007312 ORTHO05D009209 4.4e-37 159.1 131 65.6
Aqoxy1G01718 Aquilegia oxysepala HOM05D007312 ORTHO05D009209 5.7e-37 158.7 143 59.4
Pp3c7_15740 Physcomitrium patens HOM05D007312 ORTHO05D009209 1.3e-36 157.5 107 72.0
SMO145G0246 Selaginella moellendorffii HOM05D007312 ORTHO05D009209 9.1e-35 151.4 85 81.2
Nn7g38246 Nelumbo nucifera HOM05D007312 ORTHO05D009209 4.5e-34 149.1 116 72.4
Mapoly0066s0018 Marchantia polymorpha HOM05D007312 ORTHO05D009209 7.2e-32 141.7 163 49.7
Cre17.g729950 Chlamydomonas reinhardtii HOM05D007312 ORTHO05D009209 2.0e-29 133.7 96 68.8
RcHm_v2.0_Chr2g0126261 Rosa chinensis HOM05D007312 ORTHO05D009209 7.5e-29 131.7 101 67.3
CBR_g4 Chara braunii HOM05D007312 ORTHO05D009209 3.7e-28 129.4 89 67.4
Sed0015339 Sechium edule HOM05D007312 ORTHO05D009209 4.8e-28 129.0 85 80.0
Prupe.4G113200 Prunus persica HOM05D007312 ORTHO05D009209 7.7e-26 121.7 97 71.1
HPP92_010191 Vanilla planifolia HOM05D007312 ORTHO05D009209 2.2e-25 120.2 109 66.1
Dinv25919 Davidia involucrata HOM05D007312 ORTHO05D009209 6.1e-23 112.1 93 69.9
Oeu056034.1 Olea europaea HOM05D007312 ORTHO05D009209 1.4e-22 110.9 91 71.4
Thecc.02G008700 Theobroma cacao HOM05D007312 ORTHO05D009209 4.1e-19 99.4 87 66.7
ATR0752G167 Amborella trichopoda HOM05D007312 ORTHO05D009209 9.1e-19 98.2 83 66.3
FAN25G0614 Fragaria x ananassa HOM05D007312 ORTHO05D009209 1.6e-18 97.4 99 63.6
Cpa.g.sc5085.1 Carica papaya HOM05D007312 ORTHO05D009209 1.0e-17 94.7 81 70.4
Gohir.D12G045700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 2.9e-17 93.2 79 65.8
Gorai.008G048300 Gossypium raimondii HOM05D007312 ORTHO05D009209 2.9e-17 93.2 79 65.8
Sc01g0008940 Simmondsia chinensis HOM05D007312 ORTHO05D009209 9.4e-16 88.2 71 69.0
Lalb_Chr09g0328681 Lupinus albus HOM05D007312 ORTHO05D009209 4.7e-15 85.9 41 90.2
COL.COLO4_17652 Corchorus olitorius HOM05D007312 ORTHO05D009209 1.2e-13 81.3 61 65.6
FAN16G3369 Fragaria x ananassa HOM05D007312 ORTHO05D009209 5.7e-13 79.0 83 61.4
FAN21G0246 Fragaria x ananassa HOM05D007312 ORTHO05D009209 7.5e-13 78.6 86 58.1
Sabra12G0063500 Salix brachista HOM05D007312 ORTHO05D009209 7.5e-13 78.6 54 74.1
Potri.015G124601 Populus trichocarpa HOM05D007312 ORTHO05D009209 1.5e-08 64.3 42 71.4


User provided reference genes

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