Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 0.0e+00 1127.9 550 100.0
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 5.6e-298 1026.9 552 91.7
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 8.3e-294 1013.1 576 87.5
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 3.2e-293 1011.1 553 89.9
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 1.5e-218 763.1 559 66.9
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 1.8e-216 756.1 571 65.1
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 5.3e-216 754.6 582 66.0
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 5.3e-216 754.6 564 65.6
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 1.9e-213 746.1 486 72.6
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 4.7e-212 741.5 561 65.1
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 8.0e-212 740.7 555 65.9
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 2.3e-211 739.2 566 65.7
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 6.7e-211 737.6 560 65.5
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 6.7e-211 737.6 551 64.8
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 2.6e-210 735.7 565 65.0
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 9.7e-210 733.8 574 64.5
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 9.7e-210 733.8 563 64.5
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 1.3e-209 733.4 565 64.1
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 4.8e-209 731.5 566 64.7
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.4e-208 729.9 566 64.7
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 3.1e-208 728.8 560 64.5
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 5.3e-208 728.0 560 64.5
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 1.6e-207 726.5 593 62.1
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.7e-207 725.7 560 64.6
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 4.5e-207 724.9 549 65.4
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 4.5e-207 724.9 515 68.7
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 3.8e-206 721.8 588 61.6
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 6.5e-206 721.1 586 62.6
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.5e-205 719.9 559 63.5
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 1.2e-204 716.8 571 63.7
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 1.2e-204 716.8 571 63.0
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 1.6e-204 716.5 552 64.5
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 6.1e-204 714.5 488 70.9
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 8.0e-204 714.1 569 63.1
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 1.4e-203 713.4 557 64.6
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 2.3e-203 712.6 582 61.0
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 4.0e-203 711.8 564 62.6
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 5.2e-203 711.4 542 66.4
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 6.8e-203 711.1 564 63.5
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 8.8e-203 710.7 558 64.0
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 3.4e-202 708.8 549 65.2
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 3.7e-201 705.3 566 61.7
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 6.3e-201 704.5 478 70.5
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 1.1e-200 703.7 546 63.6
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 9.1e-200 700.7 477 69.8
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 2.7e-199 699.1 549 64.1
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 3.5e-199 698.7 572 61.0
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 3.5e-199 698.7 562 62.1
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 7.7e-199 697.6 554 63.4
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 2.9e-198 695.7 566 62.2
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 8.6e-198 694.1 551 64.1
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 4.2e-197 691.8 497 67.0
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 1.6e-196 689.9 494 66.8
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 2.1e-196 689.5 560 61.1
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 4.7e-196 688.3 562 61.9
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 2.3e-195 686.0 566 62.0
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 7.5e-194 681.0 561 60.1
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 7.5e-194 681.0 549 63.0
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 6.3e-193 677.9 594 59.1
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 3.1e-192 675.6 562 60.3
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 7.0e-192 674.5 564 59.8
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 9.2e-192 674.1 506 64.6
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 1.6e-191 673.3 577 59.1
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 2.7e-191 672.5 562 59.6
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 3.5e-191 672.2 530 64.7
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 5.9e-191 671.4 478 67.4
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 2.9e-190 669.1 557 59.4
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 2.9e-190 669.1 563 60.7
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 2.9e-190 669.1 551 60.6
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 2.9e-190 669.1 546 63.0
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 6.6e-190 667.9 555 59.6
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 1.5e-189 666.8 487 65.9
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 2.8e-188 662.5 582 58.2
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 1.5e-186 656.8 442 71.0
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 2.9e-185 652.5 562 58.4
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 3.7e-185 652.1 482 64.7
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 4.9e-185 651.7 546 58.8
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 6.4e-185 651.4 447 68.9
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 1.1e-184 650.6 545 60.4
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 3.2e-184 649.0 562 58.2
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 2.7e-183 646.0 568 57.6
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 6.0e-183 644.8 542 60.5
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 7.8e-183 644.4 557 58.5
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 6.6e-182 641.3 562 58.5
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 8.6e-182 641.0 554 58.3
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.9e-177 625.9 494 64.4
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 1.4e-176 623.6 585 54.9
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 5.4e-176 621.7 553 57.9
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 8.6e-174 614.4 483 62.3
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 3.2e-168 595.9 560 56.1
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 3.6e-164 582.4 565 52.9
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 4.1e-160 568.9 374 71.9
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 1.2e-156 557.4 386 68.4
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 1.6e-156 557.0 396 69.2
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.1e-156 556.6 453 62.7
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 2.8e-156 556.2 510 55.3
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 1.4e-155 553.9 457 62.4
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 1.6e-151 540.4 350 73.4
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 2.1e-151 540.0 552 52.7
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 1.9e-149 533.5 387 64.1
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 4.3e-149 532.3 434 61.3
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 1.3e-145 520.8 551 52.6
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 3.8e-145 519.2 347 70.6
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 1.1e-141 507.7 352 69.3
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 9.3e-136 488.0 522 51.7
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 4.8e-132 475.7 477 53.5
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 7.1e-128 461.8 348 64.9
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 1.8e-126 457.2 430 55.1
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 4.3e-125 452.6 444 49.3
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 4.1e-123 446.0 330 65.2
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 5.0e-121 439.1 324 66.7
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 4.2e-120 436.0 302 68.5
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 6.1e-119 432.2 302 67.9
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 1.5e-114 417.5 489 43.4
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 6.5e-113 412.1 322 63.4
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 1.1e-112 411.4 492 43.3
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 1.2e-111 407.9 373 58.4
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 4.1e-99 366.3 309 61.5
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 2.2e-92 344.0 247 68.0
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 4.1e-91 339.7 259 64.1
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 7.0e-91 339.0 253 63.6
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.7e-84 317.8 225 66.2
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 5.2e-78 296.2 504 33.1
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 3.7e-76 290.0 209 63.2
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.3e-70 270.8 255 56.1
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 2.6e-61 240.7 148 77.0
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.4e-59 234.2 161 69.6
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 7.0e-59 232.6 226 53.5
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 3.6e-55 220.3 158 62.0
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 4.4e-53 213.4 138 71.0
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 6.2e-39 166.4 166 59.0
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 2.0e-37 161.4 205 47.3
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 1.4e-35 155.2 122 59.8
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 7.1e-35 152.9 163 46.0
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 7.8e-34 149.4 94 78.7
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.0e-33 149.1 178 50.6
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 1.6e-31 141.7 121 60.3
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 2.1e-31 141.4 165 51.5
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 4.5e-29 133.7 94 69.1
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.4e-27 127.9 148 43.2
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 1.2e-26 125.6 86 69.8
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 2.2e-20 104.8 133 46.6
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 3.2e-11 74.3 71 49.3
SEGI_15377 Sequoiadendron giganteum HOM05D005105 ORTHO05D006244 7.1e-11 73.2 76 48.7


User provided reference genes

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