Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 1.3e-61 240.0 165 100.0
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 1.3e-40 170.2 141 91.5
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 3.8e-40 168.7 141 91.5
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 7.1e-39 164.5 141 89.4
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 1.6e-38 163.3 139 87.1
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 3.5e-38 162.2 156 78.2
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 6.0e-38 161.4 138 79.0
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 7.8e-38 161.0 139 84.9
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 1.3e-37 160.2 139 86.3
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 1.7e-37 159.8 139 86.3
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 3.9e-37 158.7 139 83.5
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 5.1e-37 158.3 144 56.9
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 5.1e-37 158.3 139 86.3
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 6.6e-37 157.9 140 58.6
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 6.6e-37 157.9 140 86.4
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 1.1e-36 157.1 140 82.1
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 1.5e-36 156.8 139 84.2
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 1.5e-36 156.8 144 80.6
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.9e-36 156.4 140 81.4
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 2.5e-36 156.0 157 77.1
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 2.5e-36 156.0 138 85.5
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 3.3e-36 155.6 139 84.2
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 4.3e-36 155.2 140 77.9
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 4.3e-36 155.2 156 76.3
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 5.6e-36 154.8 139 76.3
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 7.3e-36 154.5 140 83.6
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 7.3e-36 154.5 139 85.6
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 7.3e-36 154.5 139 85.6
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 7.3e-36 154.5 139 85.6
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 1.2e-35 153.7 139 81.3
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 1.6e-35 153.3 143 81.1
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 1.6e-35 153.3 139 84.2
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 2.8e-35 152.5 142 82.4
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 4.7e-35 151.8 143 81.8
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 4.7e-35 151.8 138 81.2
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 6.2e-35 151.4 138 85.5
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 8.1e-35 151.0 160 72.5
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 1.1e-34 150.6 143 81.1
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 1.4e-34 150.2 143 79.0
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.4e-34 150.2 138 83.3
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 1.4e-34 150.2 143 81.8
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 1.8e-34 149.8 155 77.4
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 3.1e-34 149.1 142 81.7
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 3.1e-34 149.1 143 81.8
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 6.9e-34 147.9 140 80.0
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 6.9e-34 147.9 140 78.6
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 8.9e-34 147.5 143 81.8
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 8.9e-34 147.5 138 70.3
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 1.5e-33 146.7 138 81.2
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 2.6e-33 146.0 155 75.5
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 2.6e-33 146.0 155 75.5
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 4.4e-33 145.2 160 73.8
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 4.4e-33 145.2 136 80.9
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 5.8e-33 144.8 156 75.0
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 5.8e-33 144.8 160 73.8
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 7.6e-33 144.4 155 74.8
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 9.9e-33 144.1 144 78.5
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 9.9e-33 144.1 138 81.9
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 1.3e-32 143.7 160 73.1
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 2.2e-32 142.9 163 49.1
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 2.2e-32 142.9 160 73.1
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 3.8e-32 142.1 137 83.9
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 3.8e-32 142.1 139 81.3
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 4.9e-32 141.7 140 81.4
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 6.4e-32 141.4 138 81.2
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 8.4e-32 141.0 128 83.6
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 1.1e-31 140.6 140 80.7
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 1.4e-31 140.2 140 79.3
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 1.4e-31 140.2 140 81.4
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 7.1e-31 137.9 139 80.6
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 7.1e-31 137.9 139 77.0
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 9.3e-31 137.5 143 79.0
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 1.2e-30 137.1 140 79.3
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 1.6e-30 136.7 160 71.9
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 1.0e-29 134.0 138 79.7
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 1.0e-29 134.0 139 53.2
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 1.0e-29 134.0 160 70.0
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 1.3e-29 133.7 138 77.5
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 1.3e-29 133.7 140 79.3
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 1.3e-29 133.7 138 78.3
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 3.0e-29 132.5 128 75.0
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 3.9e-29 132.1 139 52.5
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 3.9e-29 132.1 139 52.5
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 6.6e-29 131.3 139 69.1
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 8.7e-29 131.0 131 55.7
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 4.3e-28 128.6 138 50.7
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 7.3e-28 127.9 138 77.5
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 9.6e-28 127.5 142 49.3
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 2.1e-27 126.3 148 46.6
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 4.8e-27 125.2 175 42.9
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 1.4e-26 123.6 138 76.1
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 1.4e-26 123.6 137 77.4
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 1.4e-26 123.6 216 37.5
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 6.9e-26 121.3 142 45.8
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 1.7e-24 116.7 140 72.9
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 1.7e-24 116.7 141 39.7
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 8.4e-24 114.4 119 52.9
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 1.1e-23 114.0 139 71.9
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.1e-23 114.0 140 47.1
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.4e-23 113.6 116 54.3
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 2.4e-23 112.8 140 74.3
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 6.0e-22 108.2 115 44.3
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 1.0e-21 107.5 109 83.5
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 2.3e-21 106.3 113 51.3
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 3.0e-21 105.9 154 44.2
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 3.9e-21 105.5 140 40.0
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 2.5e-20 102.8 145 63.4
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 5.6e-20 101.7 119 47.1
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 7.4e-20 101.3 117 77.8
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 9.6e-20 100.9 117 77.8
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 9.6e-20 100.9 117 77.8
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 2.8e-19 99.4 57 77.2
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 6.2e-19 98.2 52 82.7
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 5.3e-18 95.1 117 76.9
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.6e-17 92.8 65 66.2
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 1.7e-16 90.1 51 86.3
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 2.9e-16 89.4 139 65.5
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 2.1e-14 83.2 116 39.7
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 1.3e-13 80.5 97 45.4
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 8.7e-13 77.8 52 63.5
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 9.0e-10 67.8 104 40.4
RcHm_v2.0_Chr4g0394581 Rosa chinensis HOM05D004344 ORTHO05D006026 7.9e-06 54.7 42 64.3


User provided reference genes

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