Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 0.0e+00 1290.8 742 100.0
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 0.0e+00 1087.0 748 85.3
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 3.6e-311 1071.2 747 83.1
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 1.4e-264 916.4 764 72.4
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 2.9e-124 450.3 811 49.3
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 8.4e-124 448.7 812 48.0
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 1.6e-119 434.5 727 50.3
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 5.0e-116 422.9 796 46.2
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 2.5e-115 420.6 744 44.2
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 1.8e-110 404.4 754 43.4
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 4.1e-110 403.3 781 46.5
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.2e-109 401.7 783 44.8
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 4.2e-107 393.3 771 46.3
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 1.2e-106 391.7 781 44.0
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 6.1e-106 389.4 786 44.8
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 3.0e-105 387.1 789 44.2
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 1.1e-104 385.2 793 43.8
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.1e-104 385.2 798 44.7
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 2.6e-104 384.0 682 47.1
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 3.3e-104 383.6 770 44.9
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 7.4e-104 382.5 791 44.1
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 2.6e-101 374.0 703 48.5
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 4.5e-101 373.2 780 43.6
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 4.5e-101 373.2 762 44.0
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 5.9e-101 372.9 797 41.0
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 1.3e-100 371.7 786 44.3
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 1.5e-99 368.2 781 44.9
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 2.5e-99 367.5 782 45.0
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 4.2e-99 366.7 768 42.4
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 5.5e-99 366.3 777 42.7
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 2.7e-98 364.0 704 48.9
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 2.3e-97 360.9 804 43.5
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 3.9e-97 360.1 699 46.4
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 6.7e-97 359.4 814 43.0
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.1e-96 358.6 778 42.7
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.1e-96 358.6 778 42.7
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 4.1e-94 350.1 774 44.3
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 5.0e-92 343.2 769 42.4
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 1.9e-91 341.3 708 44.9
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 7.2e-91 339.3 718 42.3
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 9.4e-91 339.0 778 42.5
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 2.7e-90 337.4 801 41.9
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 8.0e-90 335.9 709 43.3
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 3.0e-89 334.0 773 41.3
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 5.2e-89 333.2 802 41.8
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 5.2e-89 333.2 784 42.6
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 3.1e-86 323.9 795 40.1
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 5.4e-86 323.2 726 43.9
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.6e-85 321.6 724 43.5
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 2.0e-85 321.2 767 44.1
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 7.7e-85 319.3 784 41.8
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.7e-84 318.2 774 41.2
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.2e-84 317.8 773 40.5
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 5.0e-84 316.6 697 43.0
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 7.2e-83 312.8 692 42.8
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 9.4e-83 312.4 807 42.3
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 5.9e-77 293.1 709 39.9
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 6.6e-76 289.7 764 42.1
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 4.2e-75 287.0 674 39.9
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 5.5e-75 286.6 698 41.7
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 1.0e-73 282.3 571 41.3
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 9.8e-72 275.8 662 40.0
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 1.3e-71 275.4 727 41.5
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 1.1e-70 272.3 726 41.7
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 1.1e-70 272.3 690 39.0
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 1.8e-70 271.6 724 39.0
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 9.2e-70 269.2 764 35.6
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 3.5e-69 267.3 761 39.3
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 7.8e-69 266.2 747 39.0
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 8.6e-68 262.7 736 38.5
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.1e-67 262.3 766 39.9
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 1.1e-67 262.3 750 37.1
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 2.5e-67 261.2 748 39.2
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 5.6e-67 260.0 739 39.6
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 1.2e-66 258.8 758 36.4
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 1.4e-65 255.4 773 36.2
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 1.8e-65 255.0 597 39.7
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.2e-64 252.3 607 38.7
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 3.4e-64 250.8 608 39.3
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 4.4e-64 250.4 705 36.5
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 1.7e-63 248.4 736 39.1
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 1.7e-63 248.4 735 35.0
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 3.2e-62 244.2 813 37.1
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 2.0e-61 241.5 753 38.0
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 3.5e-61 240.7 438 42.9
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 5.6e-59 233.4 787 33.2
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.2e-56 225.7 700 35.4
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 1.5e-56 225.3 693 34.2
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 2.0e-56 224.9 757 33.4
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 1.2e-53 215.7 337 48.7
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 7.8e-53 213.0 753 36.4
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.0e-52 212.6 680 33.8
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.3e-52 212.2 786 31.7
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.7e-52 211.8 793 36.1
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 7.3e-51 206.5 633 39.5
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 9.5e-51 206.1 692 37.9
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 9.5e-51 206.1 746 34.2
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.6e-50 205.3 662 37.2
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 2.8e-50 204.5 631 36.6
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 3.6e-50 204.1 659 33.5
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 6.2e-50 203.4 755 33.1
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 1.8e-49 201.8 743 35.4
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.2e-48 199.1 785 35.7
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.5e-48 198.7 643 36.7
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 2.0e-48 198.4 555 35.5
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 2.0e-48 198.4 652 33.4
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 2.6e-48 198.0 751 32.0
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 9.9e-48 196.1 617 34.5
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 1.7e-47 195.3 668 33.4
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 2.2e-47 194.9 751 36.0
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 2.2e-47 194.9 667 36.7
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 3.7e-47 194.1 692 33.2
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 5.4e-46 190.3 636 35.1
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 9.2e-46 189.5 757 35.7
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 9.2e-46 189.5 705 31.9
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 4.6e-45 187.2 702 32.1
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 7.8e-45 186.4 728 34.1
MELO3C023611.2 Cucumis melo HOM05D003795 ORTHO05D004308 2.3e-44 184.9 113 84.1
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 5.1e-44 183.7 457 43.3
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 8.6e-44 183.0 761 35.5
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.5e-43 181.4 259 46.7
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 8.1e-42 176.4 643 34.8
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 3.1e-41 174.5 599 34.1
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 1.2e-40 172.6 589 33.1
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.7e-39 168.7 492 36.4
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 2.2e-39 168.3 412 45.9
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 3.8e-39 167.5 729 33.7
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 3.8e-39 167.5 766 30.0
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 1.1e-38 166.0 699 34.6
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 1.9e-38 165.2 628 33.4
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 2.7e-37 161.4 407 43.2
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 6.0e-37 160.2 705 34.8
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 3.0e-36 157.9 702 34.2
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 6.9e-33 146.7 707 29.6
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 2.2e-31 141.7 754 32.2
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 2.2e-31 141.7 689 29.0
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 4.2e-30 137.5 591 31.0
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 5.4e-30 137.1 388 42.5
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 2.7e-29 134.8 469 31.8
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 4.6e-29 134.0 351 36.5
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 6.0e-29 133.7 624 30.9
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 2.3e-28 131.7 270 37.4
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 1.3e-26 125.9 517 33.5
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 2.8e-26 124.8 223 38.1
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 6.2e-26 123.6 137 53.3
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 4.5e-24 117.5 641 33.1
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 9.9e-24 116.3 534 31.5
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 9.9e-24 116.3 534 31.5
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.4e-22 112.5 720 27.1
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 9.3e-22 109.8 633 31.4
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 4.6e-21 107.5 688 31.4
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 1.3e-20 105.9 502 31.3
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 3.9e-20 104.4 861 26.5
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 1.3e-18 99.4 574 31.0
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 4.8e-18 97.4 530 31.3
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.4e-17 95.9 152 42.1
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 7.6e-16 90.1 138 46.4
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.4e-14 85.9 198 38.9
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 3.2e-14 84.7 138 42.0
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 5.5e-14 84.0 341 31.1
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.5e-11 75.9 236 32.2
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 8.2e-10 70.1 119 40.3
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 1.1e-09 69.7 306 29.1
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 3.4e-08 64.7 116 42.2
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 3.4e-08 64.7 116 43.1
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 1.0e-07 63.2 240 31.7
Peaxi162Scf00036g00224 Petunia axillaris HOM05D002102 ORTHO05D004119 5.5e-06 57.4 85 48.2
Psat7g004680 Pisum sativum HOM05D003795 ORTHO05D004308 9.3e-06 56.6 93 45.2


User provided reference genes

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