Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 0.0e+00 1491.9 771 100.0
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 0.0e+00 1164.1 776 81.3
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 8.4e-284 980.3 775 73.2
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 1.6e-186 657.1 554 68.8
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 4.6e-165 585.9 385 81.3
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 8.9e-92 342.4 815 38.0
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 8.0e-85 319.3 807 35.4
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 2.9e-82 310.8 800 36.0
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 4.1e-81 307.0 829 36.9
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 2.7e-80 304.3 802 36.8
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 5.4e-73 280.0 697 36.6
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 9.2e-73 279.3 853 32.8
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 2.1e-72 278.1 827 33.7
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 4.7e-69 266.9 860 34.0
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 1.7e-66 258.5 800 32.4
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 8.3e-66 256.1 807 33.1
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 3.2e-65 254.2 703 34.4
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 3.2e-65 254.2 638 36.1
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 2.1e-64 251.5 805 33.7
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 3.5e-64 250.8 631 36.6
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 6.0e-64 250.0 829 32.6
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 2.3e-63 248.1 698 35.4
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 6.6e-63 246.5 807 32.6
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 6.6e-63 246.5 634 35.6
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 8.6e-63 246.1 646 36.2
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 2.1e-61 241.5 674 34.3
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 2.8e-61 241.1 800 31.8
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 4.4e-59 233.8 397 43.6
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 2.2e-58 231.5 821 31.9
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 3.8e-58 230.7 825 31.4
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 6.4e-58 229.9 806 33.3
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 8.4e-58 229.6 653 34.8
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 9.6e-54 216.1 561 34.9
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 1.6e-53 215.3 784 30.9
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 4.0e-52 210.7 646 32.8
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 4.4e-51 207.2 364 42.6
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 4.4e-51 207.2 821 30.6
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 7.6e-51 206.5 452 38.5
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 7.6e-51 206.5 737 31.8
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 1.7e-50 205.3 350 43.1
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.9e-50 203.8 768 31.6
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 6.4e-50 203.4 642 32.1
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 8.4e-50 203.0 788 32.0
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 8.4e-50 203.0 301 44.9
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.1e-48 198.4 779 30.2
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 1.0e-47 196.1 816 30.0
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.7e-47 195.3 722 30.1
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 3.0e-47 194.5 647 33.5
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 3.0e-47 194.5 396 38.6
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 2.5e-46 191.4 805 29.7
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 2.8e-45 188.0 834 30.5
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 3.6e-45 187.6 644 31.1
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 1.1e-44 186.0 517 34.4
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 3.1e-44 184.5 600 31.2
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 5.3e-44 183.7 826 28.7
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 2.0e-43 181.8 652 32.5
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 7.6e-43 179.9 434 37.1
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 1.3e-42 179.1 265 44.5
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 1.7e-42 178.7 809 28.9
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 3.8e-42 177.6 273 45.4
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 4.9e-42 177.2 786 28.8
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 1.1e-41 176.0 695 30.4
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 1.9e-41 175.3 701 30.0
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 2.4e-41 174.9 407 38.6
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 9.3e-41 172.9 368 37.5
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 2.1e-40 171.8 440 36.6
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 6.0e-40 170.2 832 27.6
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 1.1e-38 166.0 334 36.8
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 1.9e-38 165.2 598 31.3
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 4.3e-38 164.1 602 31.1
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 1.1e-36 159.5 781 29.2
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 1.8e-36 158.7 640 30.5
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 1.7e-34 152.1 308 36.4
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 4.9e-34 150.6 427 34.4
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 1.1e-33 149.4 552 32.1
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 1.4e-33 149.1 466 32.0
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 2.5e-33 148.3 398 35.9
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 3.2e-33 147.9 282 37.9
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 4.2e-33 147.5 281 38.1
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 5.5e-33 147.1 168 54.2
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 9.3e-33 146.4 544 32.7
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 1.2e-32 146.0 388 34.5
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 7.9e-32 143.3 403 33.7
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 7.9e-32 143.3 813 27.1
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 7.9e-32 143.3 397 35.3
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 1.5e-30 139.0 271 38.7
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 1.9e-30 138.7 557 32.0
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 3.3e-30 137.9 290 36.9
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 3.3e-30 137.9 611 29.8
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 5.7e-30 137.1 476 30.7
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 7.4e-30 136.7 215 43.7
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 1.3e-29 136.0 668 27.7
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 2.1e-29 135.2 140 51.4
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 4.8e-29 134.0 593 28.2
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 4.8e-29 134.0 833 27.3
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 8.2e-29 133.3 673 29.1
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 1.1e-28 132.9 288 37.2
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 1.1e-28 132.9 288 37.2
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.8e-28 132.1 378 33.6
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 3.1e-28 131.3 280 35.7
MELO3C000818.2 Cucumis melo HOM05D003739 ORTHO05D003996 1.2e-27 129.4 78 80.8
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 3.4e-27 127.9 319 37.0
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 7.6e-27 126.7 577 28.2
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 2.9e-26 124.8 367 33.0
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 2.5e-25 121.7 796 27.4
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 7.1e-25 120.2 508 29.3
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 9.3e-25 119.8 277 35.4
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 1.2e-24 119.4 644 27.8
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 2.1e-24 118.6 162 48.8
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 2.1e-24 118.6 340 31.8
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 6.1e-24 117.1 254 36.2
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.0e-23 116.3 525 30.7
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.3e-23 115.2 285 31.6
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 3.0e-23 114.8 272 37.1
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 1.9e-22 112.1 408 29.2
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 2.5e-22 111.7 416 32.9
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 3.3e-22 111.3 142 44.4
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 5.7e-22 110.5 235 34.9
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 7.4e-22 110.2 628 27.2
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 9.7e-22 109.8 229 37.6
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 2.4e-20 105.1 169 44.4
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 5.3e-20 104.0 499 27.5
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 1.2e-19 102.8 268 35.4
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.5e-19 102.4 172 36.0
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 5.9e-19 100.5 462 29.9
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 1.7e-18 99.0 481 27.7
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 2.2e-18 98.6 272 32.4
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 6.5e-18 97.1 464 29.3
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 8.5e-18 96.7 268 31.0
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 1.4e-17 95.9 507 27.8
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 7.2e-17 93.6 423 27.9
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 9.4e-17 93.2 425 27.1
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 9.4e-17 93.2 123 40.7
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 1.2e-16 92.8 522 26.4
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.6e-16 92.4 597 28.0
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 4.6e-16 90.9 218 35.3
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 6.1e-16 90.5 202 36.1
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 7.9e-16 90.1 545 27.7
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.0e-15 89.7 62 61.3
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 3.0e-15 88.2 423 27.7
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 8.8e-15 86.7 144 39.6
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.3e-14 84.3 166 38.0
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 9.7e-14 83.2 275 26.9
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.8e-13 81.6 151 35.8
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.8e-13 81.6 151 35.8
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 6.3e-13 80.5 145 35.9
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 6.9e-12 77.0 77 44.2
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 6.9e-12 77.0 819 23.4
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 2.6e-11 75.1 290 28.3
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 3.8e-10 71.2 54 63.0
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 8.5e-10 70.1 50 62.0
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 8.5e-10 70.1 208 31.7
FAN24G0282 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.2e-08 66.2 139 37.4
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 4.4e-06 57.8 83 42.2
MELO3C033933.2 Cucumis melo HOM05D003739 ORTHO05D171515 7.4e-06 57.0 39 76.9


User provided reference genes

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