Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 1.0e-103 380.2 201 100.0
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 4.4e-67 258.5 200 74.0
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 2.1e-61 239.6 199 69.8
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 4.1e-57 225.3 229 59.4
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 4.5e-56 221.9 197 63.5
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 1.7e-55 219.9 188 66.0
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 3.8e-55 218.8 199 63.3
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 3.3e-54 215.7 191 63.9
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 3.3e-54 215.7 193 64.2
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 4.3e-54 215.3 185 64.3
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 7.3e-54 214.5 199 63.3
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 9.5e-54 214.2 199 61.3
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 1.6e-53 213.4 176 67.6
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 2.1e-53 213.0 199 62.3
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 4.7e-53 211.8 234 56.8
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 8.0e-53 211.1 195 61.0
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 8.0e-53 211.1 183 63.9
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 8.0e-53 211.1 179 63.7
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 1.0e-52 210.7 197 61.4
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 1.0e-52 210.7 199 61.3
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.0e-52 210.7 195 62.1
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.0e-52 210.7 189 63.5
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 1.4e-52 210.3 183 63.9
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 1.4e-52 210.3 207 57.5
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 1.4e-52 210.3 183 63.9
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 1.4e-52 210.3 183 63.9
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 1.4e-52 210.3 180 64.4
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 2.3e-52 209.5 196 61.2
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 2.3e-52 209.5 192 59.4
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 3.1e-52 209.1 133 82.0
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 3.1e-52 209.1 179 64.2
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 3.1e-52 209.1 185 62.2
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 3.1e-52 209.1 199 60.8
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 6.8e-52 208.0 185 62.2
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 6.8e-52 208.0 197 61.4
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 6.8e-52 208.0 195 61.5
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 6.8e-52 208.0 191 60.7
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 6.8e-52 208.0 195 61.5
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 8.9e-52 207.6 195 61.0
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 1.2e-51 207.2 179 62.6
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 1.2e-51 207.2 185 61.1
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 1.5e-51 206.8 185 61.6
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 1.5e-51 206.8 199 58.3
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 2.0e-51 206.5 180 63.3
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.0e-51 206.5 197 58.9
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 2.6e-51 206.1 180 63.3
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 2.6e-51 206.1 184 62.5
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 3.4e-51 205.7 180 63.3
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 4.4e-51 205.3 185 60.5
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 1.3e-50 203.8 183 60.7
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 1.3e-50 203.8 180 62.2
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.7e-50 203.4 185 60.0
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.7e-50 203.4 185 59.5
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 2.9e-50 202.6 179 61.5
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 2.9e-50 202.6 179 61.5
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 2.9e-50 202.6 183 60.7
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.9e-50 201.8 185 58.9
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 4.9e-50 201.8 117 84.6
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 6.4e-50 201.4 193 59.6
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 6.4e-50 201.4 193 59.6
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 6.4e-50 201.4 193 59.6
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 6.4e-50 201.4 129 79.8
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 6.4e-50 201.4 192 57.8
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 8.3e-50 201.1 182 62.1
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 8.3e-50 201.1 192 58.3
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 8.3e-50 201.1 185 58.4
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 8.3e-50 201.1 185 58.4
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 8.3e-50 201.1 199 59.8
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 1.1e-49 200.7 131 77.9
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-49 200.7 178 61.2
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 1.1e-49 200.7 185 60.5
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.4e-49 200.3 199 59.3
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 1.9e-49 199.9 187 58.8
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 2.4e-49 199.5 136 74.3
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 2.4e-49 199.5 180 61.1
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 2.4e-49 199.5 180 61.7
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.2e-49 199.1 185 58.4
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 4.1e-49 198.7 145 73.1
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 5.4e-49 198.4 180 61.7
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 9.2e-49 197.6 223 54.3
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.2e-48 197.2 197 58.4
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 1.2e-48 197.2 128 78.9
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 1.6e-48 196.8 199 57.8
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 1.6e-48 196.8 246 52.0
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 2.0e-48 196.4 192 59.4
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 2.7e-48 196.1 121 79.3
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 2.7e-48 196.1 180 60.6
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 3.5e-48 195.7 180 60.0
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 3.5e-48 195.7 180 59.4
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 3.5e-48 195.7 180 59.4
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 3.5e-48 195.7 178 60.1
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 4.6e-48 195.3 180 59.4
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 4.6e-48 195.3 180 59.4
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 4.6e-48 195.3 180 59.4
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 6.0e-48 194.9 198 57.1
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 6.0e-48 194.9 199 56.8
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 6.0e-48 194.9 183 59.0
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 7.8e-48 194.5 181 61.3
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 1.7e-47 193.4 192 57.3
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 1.7e-47 193.4 192 57.3
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 2.3e-47 193.0 197 56.3
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 2.3e-47 193.0 115 82.6
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 3.0e-47 192.6 176 59.7
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 3.9e-47 192.2 123 78.0
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 3.9e-47 192.2 123 78.0
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 5.0e-47 191.8 129 75.2
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 6.6e-47 191.4 116 81.9
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 8.6e-47 191.0 186 58.1
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 8.6e-47 191.0 123 78.0
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.1e-46 190.7 180 58.3
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 1.5e-46 190.3 193 57.0
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 3.3e-46 189.1 117 79.5
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 5.6e-46 188.3 180 58.9
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 5.6e-46 188.3 192 55.7
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 9.5e-46 187.6 193 57.0
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 9.5e-46 187.6 123 76.4
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 1.6e-45 186.8 123 75.6
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 1.6e-45 186.8 186 55.9
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 2.1e-45 186.4 123 75.6
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 2.8e-45 186.0 199 54.3
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 2.8e-45 186.0 123 75.6
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 2.8e-45 186.0 188 55.3
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.2e-45 184.9 185 56.8
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-44 184.1 185 56.2
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.3e-44 183.0 132 69.7
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.5e-43 180.3 110 80.9
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.5e-43 180.3 110 80.9
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.5e-43 180.3 185 55.7
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.3e-42 177.2 203 52.7
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.0e-39 167.5 176 56.2
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 2.3e-39 166.4 184 54.3
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 6.6e-39 164.9 161 57.1
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 3.6e-37 159.1 188 46.8
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 7.5e-35 151.4 181 43.6
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 9.9e-35 151.0 95 81.1
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 9.9e-35 151.0 116 64.7
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 1.3e-34 150.6 180 45.0
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 2.9e-34 149.4 116 62.1
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 1.1e-33 147.5 87 85.1
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.4e-33 147.1 110 69.1
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 1.5e-30 137.1 94 77.7
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 4.3e-30 135.6 200 42.5
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 5.6e-30 135.2 70 97.1
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 1.7e-26 123.6 64 98.4
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 1.9e-25 120.2 77 80.5
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 1.9e-25 120.2 77 80.5
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 4.2e-25 119.0 77 79.2
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 9.2e-25 117.9 77 79.2
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 2.3e-23 113.2 116 46.6
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 1.1e-22 110.9 115 45.2
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 7.3e-22 108.2 71 80.3
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 4.7e-21 105.5 123 46.3
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 2.4e-20 103.2 72 80.6
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 4.9e-18 95.5 62 71.0
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 6.4e-18 95.1 62 71.0
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 6.0e-16 88.6 116 44.0
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.0e-15 87.8 62 66.1
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 1.7e-15 87.0 116 37.1
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 4.3e-14 82.4 110 36.4
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 5.6e-14 82.0 61 70.5
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 3.6e-13 79.3 61 68.9
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.3e-10 70.9 49 73.5
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.3e-10 70.9 49 73.5
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 8.4e-10 68.2 52 59.6
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 6.0e-08 62.0 59 59.3
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 6.7e-07 58.5 89 40.4


User provided reference genes

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