Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G007130 Citrullus lanatus HOM05D006834 ORTHO05D008623 5.4e-243 844.0 442 100.0
CsaV3_5G017580 Cucumis sativus L. HOM05D006834 ORTHO05D008623 9.2e-211 736.9 438 87.7
Sed0016094 Sechium edule HOM05D006834 ORTHO05D008623 6.9e-206 720.7 442 86.0
MELO3C005199.2 Cucumis melo HOM05D006834 ORTHO05D008623 7.1e-203 710.7 443 84.2
Thecc.01G326600 Theobroma cacao HOM05D006834 ORTHO05D008623 1.0e-129 467.6 425 57.2
QL12p035081 Quercus lobata HOM05D006834 ORTHO05D008623 1.8e-129 466.8 416 58.9
QL12p035100 Quercus lobata HOM05D006834 ORTHO05D008623 1.8e-129 466.8 416 58.9
Sabra02G0148600 Salix brachista HOM05D006834 ORTHO05D008623 4.4e-128 462.2 427 56.0
GSVIVG01028237001 Vitis vinifera HOM05D006834 ORTHO05D008623 7.5e-128 461.5 442 57.0
Atru.chr5.848 Acer truncatum HOM05D006834 ORTHO05D008623 2.8e-127 459.5 435 55.9
Gohir.A12G119200 Gossypium hirsutum HOM05D006834 ORTHO05D008623 4.1e-126 455.7 426 55.4
Potri.002G186100 Populus trichocarpa HOM05D006834 ORTHO05D008623 4.1e-126 455.7 427 55.0
Gorai.008G133900 Gossypium raimondii HOM05D006834 ORTHO05D008623 9.2e-126 454.5 426 55.2
Eucgr.A00997 Eucalyptus grandis HOM05D006834 ORTHO05D008623 3.5e-125 452.6 432 56.2
Duzib138G0585 Durio zibethinus HOM05D006834 ORTHO05D008623 4.5e-125 452.2 426 55.4
Lj1g0008019 Lotus japonicus HOM05D006834 ORTHO05D008623 6.6e-124 448.4 429 53.6
PGR042G0322 Punica granatum HOM05D006834 ORTHO05D008623 8.6e-124 448.0 417 56.6
TWI14G0919 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 1.1e-123 447.6 415 58.1
Dinv12076 Davidia involucrata HOM05D006834 ORTHO05D008623 4.7e-122 442.2 423 56.0
Lalb_Chr18g0046351 Lupinus albus HOM05D006834 ORTHO05D008623 8.0e-122 441.4 410 56.3
MD09G1291400 Malus domestica HOM05D006834 ORTHO05D008623 1.0e-121 441.0 421 54.4
Cfa004921 Carpinus fangiana HOM05D006834 ORTHO05D008623 3.1e-121 439.5 425 55.3
Actinidia21334 Actinidia chinensis HOM05D006834 ORTHO05D008623 2.0e-120 436.8 431 53.6
Ciclev10020225m.g Citrus clementina HOM05D006834 ORTHO05D008623 3.4e-120 436.0 414 56.5
CSS0011680 Camellia sinensis var. sinensis HOM05D006834 ORTHO05D008623 1.3e-119 434.1 445 53.5
vmacro15952 Vaccinium macrocarpon HOM05D006834 ORTHO05D008623 1.3e-119 434.1 415 54.9
Cpa.g.sc57.31 Carica papaya HOM05D006834 ORTHO05D008623 2.2e-119 433.3 435 54.0
TWI59G0932 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 6.4e-119 431.8 409 56.5
Phvul.001G218900 Phaseolus vulgaris HOM05D006834 ORTHO05D008623 1.1e-118 431.0 407 56.3
CiPaw.08G082000 Carya illinoinensis HOM05D006834 ORTHO05D008623 2.4e-118 429.9 441 55.6
Glyma.19G222100 Glycine max HOM05D006834 ORTHO05D008623 4.1e-118 429.1 413 55.0
VMungo1383G1632 Vigna mungo HOM05D006834 ORTHO05D008623 2.7e-117 426.4 412 54.4
TPR.G8370 Trifolium pratense HOM05D006834 ORTHO05D008623 3.5e-117 426.0 407 54.3
Psat3g017400 Pisum sativum HOM05D006834 ORTHO05D008623 3.0e-116 422.9 415 54.0
Medtr7g110820 Medicago truncatula HOM05D006834 ORTHO05D008623 8.6e-116 421.4 405 54.6
Nn4g25303 Nelumbo nucifera HOM05D006834 ORTHO05D008623 9.5e-115 417.9 420 54.3
TAR636G0448 Trochodendron aralioides HOM05D006834 ORTHO05D008623 3.6e-114 416.0 410 53.7
MBI18_g03845_MAGBIO Magnolia biondii HOM05D006834 ORTHO05D008623 4.7e-114 415.6 367 57.5
Haze_05159 Corylus avellana HOM05D006834 ORTHO05D008623 8.0e-114 414.8 416 54.1
CANSAT25G0194 Cannabis sativa HOM05D006834 ORTHO05D008623 4.0e-113 412.5 430 50.9
Rhsim01G0000800 Rhododendron simsii HOM05D006834 ORTHO05D008623 5.8e-112 408.7 409 52.3
Aa31LG10G16050 Aethionema arabicum HOM05D006834 ORTHO05D008623 1.3e-111 407.5 428 50.2
AL5G44760 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 1.9e-110 403.7 427 51.5
Aqoxy2G02436 Aquilegia oxysepala HOM05D006834 ORTHO05D008623 4.1e-110 402.5 416 51.7
A09p54180 Brassica napus HOM05D006834 ORTHO05D008623 9.2e-110 401.4 437 49.2
BraA09t40830Z Brassica rapa HOM05D006834 ORTHO05D008623 9.2e-110 401.4 432 49.3
AT3G62080 Arabidopsis thaliana HOM05D006834 ORTHO05D008623 1.6e-109 400.6 427 51.1
C08p37040 Brassica napus HOM05D006834 ORTHO05D008623 6.0e-109 398.7 437 49.0
PSO761G0283 Papaver somniferum HOM05D006834 ORTHO05D008623 1.0e-108 397.9 425 51.3
BolC8t51281H Brassica oleracea HOM05D006834 ORTHO05D008623 1.7e-108 397.1 437 48.7
Carub.0005s2883 Capsella rubella HOM05D006834 ORTHO05D008623 3.0e-108 396.4 427 50.1
CARHR172420 Cardamine hirsuta HOM05D006834 ORTHO05D008623 3.0e-108 396.4 427 49.9
Sp5g01290 Schrenkiella parvula HOM05D006834 ORTHO05D008623 3.0e-108 396.4 432 49.3
AL5G44880 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 6.6e-108 395.2 428 50.5
Thhalv10005996m.g Eutrema salsugineum HOM05D006834 ORTHO05D008623 2.8e-106 389.8 429 49.4
PSO210G3353 Papaver somniferum HOM05D006834 ORTHO05D008623 1.4e-105 387.5 425 50.4
Cc01_g21740 Coffea canephora HOM05D006834 ORTHO05D008623 2.0e-104 383.6 437 47.4
PGSC0003DMG401001116 Solanum tuberosum HOM05D006834 ORTHO05D008623 9.9e-104 381.3 418 49.3
arahy.Tifrunner.gnm1.ann1.AJ9Z2K Arachis hypogaea HOM05D006834 ORTHO05D008623 2.2e-103 380.2 414 49.5
THA.LOC104817424 Tarenaya hassleriana HOM05D006834 ORTHO05D008623 1.1e-102 377.9 424 47.2
HanXRQChr06g0167961 Helianthus annuus HOM05D006834 ORTHO05D008623 1.9e-102 377.1 439 48.5
AUR62032606 Chenopodium quinoa HOM05D006834 ORTHO05D008623 7.1e-102 375.2 415 50.6
BcaC07g40700 Brassica carinata HOM05D006834 ORTHO05D008623 2.3e-100 370.2 437 47.4
AUR62001071 Chenopodium quinoa HOM05D006834 ORTHO05D008623 3.9e-100 369.4 415 50.4
Lsat_1_v5_gn_8_167261 Lactuca sativa HOM05D006834 ORTHO05D008623 3.9e-100 369.4 414 49.8
FAN19G1238 Fragaria x ananassa HOM05D006834 ORTHO05D008623 6.6e-100 368.6 420 47.6
ATR0796G131 Amborella trichopoda HOM05D006834 ORTHO05D008623 8.6e-100 368.2 366 50.8
arahy.Tifrunner.gnm1.ann1.W0LIHS Arachis hypogaea HOM05D006834 ORTHO05D008623 2.5e-99 366.7 440 46.6
Nitab4.5_0007915g0010 Nicotiana tabacum HOM05D006834 ORTHO05D008623 9.6e-99 364.8 420 47.4
FvH4_1g26150 Fragaria vesca HOM05D006834 ORTHO05D008623 1.2e-98 364.4 420 47.4
CAN.G179.29 Capsicum annuum HOM05D006834 ORTHO05D008623 1.6e-98 364.0 412 48.3
FAN26G0527 Fragaria x ananassa HOM05D006834 ORTHO05D008623 8.1e-98 361.7 411 47.9
Sopen01g030580 Solanum pennellii HOM05D006834 ORTHO05D008623 8.1e-98 361.7 443 46.3
Nitab4.5_0003092g0080 Nicotiana tabacum HOM05D006834 ORTHO05D008623 2.4e-97 360.1 420 46.7
Ca_09251_v3 Cicer arietinum L. HOM05D006834 ORTHO05D008623 6.8e-97 358.6 300 59.0
FAN23G1444 Fragaria x ananassa HOM05D006834 ORTHO05D008623 8.9e-97 358.2 415 47.7
RcHm_v2.0_Chr3g0485641 Rosa chinensis HOM05D006834 ORTHO05D008623 8.9e-97 358.2 349 52.7
Manes.05G007900 Manihot esculenta HOM05D006834 ORTHO05D008623 1.1e-94 351.3 324 58.6
Ah.12g061380 Amaranthus hybridus HOM05D006834 ORTHO05D008623 3.2e-94 349.7 419 48.2
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 2.3e-92 343.6 393 50.6
Migut.D01683 Erythranthe guttata HOM05D006834 ORTHO05D008623 5.1e-92 342.4 416 47.4
COL.COLO4_23116 Corchorus olitorius HOM05D006834 ORTHO05D008623 1.6e-90 337.4 345 55.1
Oeu008276.1 Olea europaea HOM05D006834 ORTHO05D008623 4.0e-89 332.8 459 42.3
EL10Ac9g22392 Beta vulgaris HOM05D006834 ORTHO05D008623 3.8e-87 326.2 424 43.9
MSTRG.21731 Avicennia marina HOM05D006834 ORTHO05D008623 1.1e-86 324.7 421 42.5
SGA_v2.0_scaffold310G48195 Striga asiatica HOM05D006834 ORTHO05D008623 8.7e-84 315.1 424 43.4
Gohir.D12G123000 Gossypium hirsutum HOM05D006834 ORTHO05D008623 7.3e-83 312.0 333 53.5
CDE01G0777 Ceratophyllum demersum HOM05D006834 ORTHO05D008623 2.1e-82 310.5 367 47.1
DCAR_012294 Daucus carota HOM05D006834 ORTHO05D008623 1.2e-77 294.7 427 40.5
Prupe.3G001500 Prunus persica HOM05D006834 ORTHO05D008623 3.7e-74 283.1 327 51.1
AUR62031719 Chenopodium quinoa HOM05D006834 ORTHO05D008623 1.8e-73 280.8 415 43.4
Os01g0286000 Oryza sativa ssp. japonica HOM05D006834 ORTHO05D008623 4.5e-72 276.2 398 40.5
Hma1.2p1_0408F.1_g146240 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 6.0e-69 265.8 290 51.7
Pp3c3_29200 Physcomitrium patens HOM05D006834 ORTHO05D008623 2.8e-66 256.9 445 33.9
SMO339G0071 Selaginella moellendorffii HOM05D006834 ORTHO05D008623 1.8e-60 237.7 387 36.7
Zm00001eb129510 Zea mays HOM05D006834 ORTHO05D008623 2.3e-60 237.3 364 37.9
HPP92_001172 Vanilla planifolia HOM05D006834 ORTHO05D008623 3.9e-60 236.5 237 53.6
Mapoly0053s0040 Marchantia polymorpha HOM05D006834 ORTHO05D008623 2.0e-56 224.2 400 32.5
Sc05g0000050 Simmondsia chinensis HOM05D006834 ORTHO05D008623 3.6e-53 213.4 214 49.5
Solyc01g079060.4 Solanum lycopersicum HOM05D006834 ORTHO05D008623 7.7e-48 195.7 209 45.0
Peaxi162Scf00309g00622 Petunia axillaris HOM05D006834 ORTHO05D008623 1.8e-41 174.5 218 50.9
MELO3C028884.2 Cucumis melo HOM05D006834 ORTHO05D008623 2.8e-34 150.6 108 72.2
Peaxi162Scf00309g00627 Petunia axillaris HOM05D006834 ORTHO05D008623 1.8e-28 131.3 205 35.6
MELO3C033776.2 Cucumis melo HOM05D006834 ORTHO05D008623 2.6e-27 127.5 72 80.6
MELO3C005268.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.7e-23 114.8 72 73.6
Hma1.2p1_1735F.1_g299880 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 2.2e-23 114.4 89 58.4
MELO3C032404.2 Cucumis melo HOM05D006834 ORTHO05D008623 4.2e-22 110.2 57 84.2
MELO3C005269.2 Cucumis melo HOM05D006834 ORTHO05D008623 8.0e-21 105.9 81 72.8
CBR_g12374 Chara braunii HOM05D006834 ORTHO05D008623 7.7e-16 89.4 251 29.1
MELO3C032406.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.2e-13 82.0 61 77.0
MELO3C029443.2 Cucumis melo HOM05D006834 ORTHO05D008623 6.8e-12 76.3 41 82.9
MELO3C026294.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.7e-10 71.6 60 68.3
HPP92_010139 Vanilla planifolia HOM05D006834 ORTHO05D008623 2.7e-08 64.3 113 38.1
Sc05g0000060 Simmondsia chinensis HOM05D006834 ORTHO05D008623 2.5e-06 57.8 108 40.7


User provided reference genes

Program Settings