Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G007020 Citrullus lanatus HOM05D007103 ORTHO05D008948 2.2e-255 885.2 455 100.0
MELO3C005211.2 Cucumis melo HOM05D007103 ORTHO05D008948 9.9e-184 647.1 372 91.9
CsaV3_5G017430 Cucumis sativus L. HOM05D007103 ORTHO05D008948 2.2e-175 619.4 347 92.5
Sed0022925 Sechium edule HOM05D007103 ORTHO05D008948 2.3e-164 582.8 338 89.3
Cfa015108 Carpinus fangiana HOM05D007103 ORTHO05D008948 3.9e-140 502.3 336 75.6
Haze_01571 Corylus avellana HOM05D007103 ORTHO05D008948 4.8e-138 495.4 336 74.4
GSVIVG01010248001 Vitis vinifera HOM05D007103 ORTHO05D008948 9.1e-137 491.1 342 74.9
Nn3g18722 Nelumbo nucifera HOM05D007103 ORTHO05D008948 1.7e-135 486.9 338 72.8
CiPaw.05G161900 Carya illinoinensis HOM05D007103 ORTHO05D008948 4.2e-134 482.3 315 77.5
QL03p041867 Quercus lobata HOM05D007103 ORTHO05D008948 4.2e-134 482.3 336 73.8
TAR371G1171 Trochodendron aralioides HOM05D007103 ORTHO05D008948 3.0e-132 476.1 338 71.6
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 4.0e-132 475.7 339 72.0
Manes.10G065901 Manihot esculenta HOM05D007103 ORTHO05D008948 2.2e-130 469.9 338 72.2
MBI06_g12320_MAGBIO Magnolia biondii HOM05D007103 ORTHO05D008948 3.7e-130 469.2 317 74.8
Dinv06214 Davidia involucrata HOM05D007103 ORTHO05D008948 6.3e-130 468.4 321 72.9
Prupe.1G342500 Prunus persica HOM05D007103 ORTHO05D008948 2.7e-125 453.0 347 70.3
CANSAT78G0644 Cannabis sativa HOM05D007103 ORTHO05D008948 5.2e-124 448.7 318 69.8
CSS0049146 Camellia sinensis var. sinensis HOM05D007103 ORTHO05D008948 6.8e-124 448.4 338 67.5
Potri.008G143700 Populus trichocarpa HOM05D007103 ORTHO05D008948 1.2e-123 447.6 337 69.1
PGR044G1063 Punica granatum HOM05D007103 ORTHO05D008948 3.4e-123 446.0 340 67.9
COL.COLO4_27515 Corchorus olitorius HOM05D007103 ORTHO05D008948 9.8e-123 444.5 341 68.6
Sabra08G0108900 Salix brachista HOM05D007103 ORTHO05D008948 8.3e-122 441.4 337 68.2
Thecc.02G296200 Theobroma cacao HOM05D007103 ORTHO05D008948 3.1e-121 439.5 341 67.7
Eucgr.B02623 Eucalyptus grandis HOM05D007103 ORTHO05D008948 5.4e-121 438.7 339 66.7
Lj3A854G74 Lonicera japonica HOM05D007103 ORTHO05D008948 2.9e-119 433.0 342 65.8
ATR0618G149 Amborella trichopoda HOM05D007103 ORTHO05D008948 1.1e-118 431.0 338 64.5
Ciclev10005118m.g Citrus clementina HOM05D007103 ORTHO05D008948 1.2e-117 427.6 277 77.6
THA.LOC104805941 Tarenaya hassleriana HOM05D007103 ORTHO05D008948 4.7e-117 425.6 340 65.6
Gohir.D01G137900 Gossypium hirsutum HOM05D007103 ORTHO05D008948 1.4e-116 424.1 343 66.2
Rhsim04G0168800 Rhododendron simsii HOM05D007103 ORTHO05D008948 4.0e-116 422.5 348 63.8
vmacro08589 Vaccinium macrocarpon HOM05D007103 ORTHO05D008948 4.0e-116 422.5 379 61.2
RcHm_v2.0_Chr4g0446051 Rosa chinensis HOM05D007103 ORTHO05D008948 6.8e-116 421.8 348 65.5
Gorai.002G168100 Gossypium raimondii HOM05D007103 ORTHO05D008948 2.0e-115 420.2 343 65.6
Solyc04g008560.3 Solanum lycopersicum HOM05D007103 ORTHO05D008948 9.8e-115 417.9 341 62.8
PGSC0003DMG400031375 Solanum tuberosum HOM05D007103 ORTHO05D008948 1.3e-114 417.5 341 62.5
Gohir.A01G145152 Gossypium hirsutum HOM05D007103 ORTHO05D008948 2.8e-114 416.4 343 64.7
Sopen04g003720 Solanum pennellii HOM05D007103 ORTHO05D008948 2.8e-114 416.4 341 62.5
Peaxi162Scf00329g00938 Petunia axillaris HOM05D007103 ORTHO05D008948 8.3e-114 414.8 341 62.5
Lsat_1_v5_gn_3_27560 Lactuca sativa HOM05D007103 ORTHO05D008948 1.8e-113 413.7 336 62.8
Ciclev10010767m.g Citrus clementina HOM05D007103 ORTHO05D008948 3.1e-113 412.9 254 80.7
HanXRQChr14g0446891 Helianthus annuus HOM05D007103 ORTHO05D008948 3.1e-113 412.9 335 64.5
Nitab4.5_0000129g0430 Nicotiana tabacum HOM05D007103 ORTHO05D008948 3.1e-113 412.9 341 62.5
Aa31LG2G7810 Aethionema arabicum HOM05D007103 ORTHO05D008948 7.0e-113 411.8 342 64.6
arahy.Tifrunner.gnm1.ann1.CDY64E Arachis hypogaea HOM05D007103 ORTHO05D008948 7.0e-113 411.8 338 65.7
Glyma.05G135400 Glycine max HOM05D007103 ORTHO05D008948 7.0e-113 411.8 337 64.7
Actinidia32355 Actinidia chinensis HOM05D007103 ORTHO05D008948 9.2e-113 411.4 345 64.3
HPP92_022082 Vanilla planifolia HOM05D007103 ORTHO05D008948 2.0e-112 410.2 337 67.4
arahy.Tifrunner.gnm1.ann1.U7H2Z0 Arachis hypogaea HOM05D007103 ORTHO05D008948 2.7e-112 409.8 338 65.4
Nitab4.5_0007973g0020 Nicotiana tabacum HOM05D007103 ORTHO05D008948 3.5e-112 409.5 351 61.3
Phvul.002G186800 Phaseolus vulgaris HOM05D007103 ORTHO05D008948 2.3e-111 406.8 337 63.5
Ca_18212_v3 Cicer arietinum L. HOM05D007103 ORTHO05D008948 8.6e-111 404.8 337 64.4
CDE08G0078 Ceratophyllum demersum HOM05D007103 ORTHO05D008948 3.3e-110 402.9 335 61.8
Lj4g0001083 Lotus japonicus HOM05D007103 ORTHO05D008948 2.1e-109 400.2 343 62.7
AL5G11410 Arabidopsis lyrata HOM05D007103 ORTHO05D008948 2.8e-109 399.8 341 63.0
Carub.0005s0121 Capsella rubella HOM05D007103 ORTHO05D008948 4.7e-109 399.1 341 63.0
Sp2g13560 Schrenkiella parvula HOM05D007103 ORTHO05D008948 4.0e-108 396.0 342 62.6
MSTRG.2093 Avicennia marina HOM05D007103 ORTHO05D008948 2.6e-107 393.3 342 59.4
MD13G1010500 Malus domestica HOM05D007103 ORTHO05D008948 2.6e-107 393.3 346 63.9
Psat7g086680 Pisum sativum HOM05D007103 ORTHO05D008948 3.4e-107 392.9 336 61.3
Lalb_Chr13g0293061 Lupinus albus HOM05D007103 ORTHO05D008948 4.4e-107 392.5 337 62.3
unitig_8.g4025 Utricularia gibba HOM05D007103 ORTHO05D008948 7.5e-107 391.7 340 60.9
Thhalv10004194m.g Eutrema salsugineum HOM05D007103 ORTHO05D008948 2.2e-106 390.2 344 64.0
SGA_v2.0_scaffold127G33990 Striga asiatica HOM05D007103 ORTHO05D008948 1.9e-105 387.1 344 58.7
AT2G02148 Arabidopsis thaliana HOM05D007103 ORTHO05D008948 2.7e-104 383.3 338 62.7
DCAR_030327 Daucus carota HOM05D007103 ORTHO05D008948 3.5e-104 382.9 334 57.5
BraA09t37988Z Brassica rapa HOM05D007103 ORTHO05D008948 6.0e-104 382.1 340 60.9
TPR.G34765 Trifolium pratense HOM05D007103 ORTHO05D008948 6.0e-104 382.1 339 61.4
FvH4_4g36300 Fragaria vesca HOM05D007103 ORTHO05D008948 1.3e-103 380.9 349 58.7
FAN12G1264 Fragaria x ananassa HOM05D007103 ORTHO05D008948 1.3e-103 380.9 349 58.7
FAN07G2615 Fragaria x ananassa HOM05D007103 ORTHO05D008948 3.0e-103 379.8 349 58.5
FAN17G1256 Fragaria x ananassa HOM05D007103 ORTHO05D008948 3.9e-103 379.4 350 58.6
A09p23820 Brassica napus HOM05D007103 ORTHO05D008948 5.0e-103 379.0 340 60.3
C09p30690 Brassica napus HOM05D007103 ORTHO05D008948 5.0e-103 379.0 338 60.4
CAN.G458.2 Capsicum annuum HOM05D007103 ORTHO05D008948 6.6e-103 378.6 282 65.6
BolC9t55934H Brassica oleracea HOM05D007103 ORTHO05D008948 1.1e-102 377.9 335 61.2
BcaC04g21529 Brassica carinata HOM05D007103 ORTHO05D008948 1.5e-102 377.5 329 62.0
BcaB07g30707 Brassica carinata HOM05D007103 ORTHO05D008948 2.5e-102 376.7 334 60.8
CARHR144820 Cardamine hirsuta HOM05D007103 ORTHO05D008948 2.5e-102 376.7 346 60.1
PSO478G2004 Papaver somniferum HOM05D007103 ORTHO05D008948 2.1e-101 373.6 336 61.0
Migut.E00576 Erythranthe guttata HOM05D007103 ORTHO05D008948 2.3e-100 370.2 363 55.4
Sc03g0005470 Simmondsia chinensis HOM05D007103 ORTHO05D008948 8.9e-100 368.2 314 61.8
FAN22G0934 Fragaria x ananassa HOM05D007103 ORTHO05D008948 2.9e-98 363.2 323 59.1
VMungo0251G2627 Vigna mungo HOM05D007103 ORTHO05D008948 3.2e-97 359.8 395 53.7
ECA246G2851 Erigeron canadensis HOM05D007103 ORTHO05D008948 5.4e-97 359.0 348 55.2
Glyma.08G090600 Glycine max HOM05D007103 ORTHO05D008948 1.6e-96 357.5 253 70.8
Aqoxy3G00022 Aquilegia oxysepala HOM05D007103 ORTHO05D008948 5.6e-94 349.0 265 67.2
AUR62003469 Chenopodium quinoa HOM05D007103 ORTHO05D008948 1.1e-92 344.7 289 60.9
PSO017G4620 Papaver somniferum HOM05D007103 ORTHO05D008948 1.6e-88 330.9 268 65.3
BcaB07g30709 Brassica carinata HOM05D007103 ORTHO05D008948 8.6e-87 325.1 336 55.1
SalBow2G1702 Salvia bowleyana HOM05D007103 ORTHO05D008948 1.2e-85 321.2 280 61.1
EL10Ac6g15409 Beta vulgaris HOM05D007103 ORTHO05D008948 1.8e-84 317.4 385 47.5
SEGI_34932 Sequoiadendron giganteum HOM05D007103 ORTHO05D008948 7.6e-83 312.0 294 56.8
AUR62017776 Chenopodium quinoa HOM05D007103 ORTHO05D008948 3.8e-82 309.7 282 57.4
Zm00001eb228800 Zea mays HOM05D007103 ORTHO05D008948 5.1e-79 299.3 276 56.9
Mapoly0001s0015 Marchantia polymorpha HOM05D007103 ORTHO05D008948 8.1e-77 292.0 331 49.2
Atru.chr11.1054 Acer truncatum HOM05D007103 ORTHO05D008948 4.2e-73 279.6 316 50.3
Pp3c6_26300 Physcomitrium patens HOM05D007103 ORTHO05D008948 2.3e-71 273.9 353 45.0
Pp3c5_2140 Physcomitrium patens HOM05D007103 ORTHO05D008948 1.1e-70 271.6 366 44.5
Actinidia25204 Actinidia chinensis HOM05D007103 ORTHO05D008948 1.5e-70 271.2 183 74.3
SMO358G0481 Selaginella moellendorffii HOM05D007103 ORTHO05D008948 6.9e-68 262.3 352 42.6
Cpa.g.sc2.105 Carica papaya HOM05D007103 ORTHO05D008948 1.2e-59 235.0 221 59.7
CBR_g70721 Chara braunii HOM05D007103 ORTHO05D008948 1.9e-54 217.6 198 51.0
AagrBONN_evm.TU.Sc2ySwM_368.3256 Anthoceros agrestis HOM05D007103 ORTHO05D008948 1.8e-52 211.1 207 50.7
Medtr5g010860 Medicago truncatula HOM05D007103 ORTHO05D008948 9.3e-49 198.7 176 63.6
Actinidia31381 Actinidia chinensis HOM05D007103 ORTHO05D008948 2.0e-38 164.5 274 40.1
Pp3c6_29570 Physcomitrium patens HOM05D007103 ORTHO05D008948 1.1e-33 148.7 188 43.6
Aa31LG1G6410 Aethionema arabicum HOM05D007103 ORTHO05D008948 6.3e-13 79.7 103 46.6
Cpa.g.sc2.103 Carica papaya HOM05D007103 ORTHO05D008948 6.3e-13 79.7 64 65.6
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 4.1e-12 77.0 118 41.5
Medtr6g043130 Medicago truncatula HOM05D007103 ORTHO05D008948 1.3e-10 72.0 42 76.2
Ciclev10006333m.g Citrus clementina HOM05D007103 ORTHO05D008948 1.9e-09 68.2 69 59.4
CAN.G166.15 Capsicum annuum HOM05D007103 ORTHO05D008948 1.2e-08 65.5 68 48.5


User provided reference genes

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