Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G007000 Citrullus lanatus HOM05D000265 ORTHO05D000161 1.7e-55 219.2 116 100.0
ClCG10G018330 Citrullus lanatus HOM05D000265 ORTHO05D000161 6.1e-21 104.4 127 55.9
Sed0020281 Sechium edule HOM05D000265 ORTHO05D000161 3.0e-20 102.1 116 56.0
MELO3C009541.2 Cucumis melo HOM05D000265 ORTHO05D000161 4.0e-20 101.7 129 52.7
Sed0012603 Sechium edule HOM05D000265 ORTHO05D000161 6.8e-20 100.9 130 48.5
CsaV3_3G037990 Cucumis sativus L. HOM05D000265 ORTHO05D000161 7.5e-19 97.4 130 50.8
Lj1g0006008 Lotus japonicus HOM05D000265 ORTHO05D000161 1.9e-14 82.8 125 45.6
Sed0007448 Sechium edule HOM05D000265 ORTHO05D000161 2.5e-14 82.4 125 48.8
CsaV3_6G041130 Cucumis sativus L. HOM05D000265 ORTHO05D000161 4.7e-13 78.2 124 46.0
Manes.08G033800 Manihot esculenta HOM05D000265 ORTHO05D000161 4.7e-13 78.2 114 43.9
COL.COLO4_29571 Corchorus olitorius HOM05D000265 ORTHO05D000161 1.0e-12 77.0 123 41.5
Sed0023191 Sechium edule HOM05D000265 ORTHO05D000161 2.3e-12 75.9 115 49.6
Thecc.05G104800 Theobroma cacao HOM05D000265 ORTHO05D000161 2.3e-12 75.9 115 48.7
MELO3C024588.2 Cucumis melo HOM05D000265 ORTHO05D000161 3.0e-12 75.5 117 47.0
Potri.006G203100 Populus trichocarpa HOM05D000265 ORTHO05D000161 5.2e-12 74.7 122 41.8
Haze_20182 Corylus avellana HOM05D000265 ORTHO05D000161 2.0e-11 72.8 116 44.0
Lj1C1053G6 Lonicera japonica HOM05D000265 ORTHO05D000161 2.0e-11 72.8 124 42.7
Sabra06G0156300 Salix brachista HOM05D000265 ORTHO05D000161 2.0e-11 72.8 118 43.2
Potri.016G070100 Populus trichocarpa HOM05D000265 ORTHO05D000161 2.6e-11 72.4 125 42.4
RcHm_v2.0_Chr3g0475951 Rosa chinensis HOM05D000265 ORTHO05D000161 2.6e-11 72.4 115 43.5
Cfa020031 Carpinus fangiana HOM05D000265 ORTHO05D000161 7.5e-11 70.9 116 43.1
CiPaw.09G021000 Carya illinoinensis HOM05D000265 ORTHO05D000161 7.5e-11 70.9 125 40.0
MD12G1040500 Malus domestica HOM05D000265 ORTHO05D000161 7.5e-11 70.9 120 43.3
PGR142G0943 Punica granatum HOM05D000265 ORTHO05D000161 1.3e-10 70.1 117 42.7
TPR.G35564 Trifolium pratense HOM05D000265 ORTHO05D000161 1.7e-10 69.7 115 40.9
Nn6g34686 Nelumbo nucifera HOM05D000265 ORTHO05D000161 2.8e-10 68.9 124 40.3
Phvul.001G195700 Phaseolus vulgaris HOM05D000265 ORTHO05D000161 2.8e-10 68.9 125 40.0
Ca_09058_v3 Cicer arietinum L. HOM05D000265 ORTHO05D000161 3.7e-10 68.6 114 42.1
Duzib106G0130 Durio zibethinus HOM05D000265 ORTHO05D000161 3.7e-10 68.6 127 44.1
Ciclev10013861m.g Citrus clementina HOM05D000265 ORTHO05D000161 4.8e-10 68.2 114 41.2
Gohir.D04G091300 Gossypium hirsutum HOM05D000265 ORTHO05D000161 4.8e-10 68.2 131 42.0
Gorai.009G397200 Gossypium raimondii HOM05D000265 ORTHO05D000161 4.8e-10 68.2 131 42.0
TWI74G0813 Tripterygium wilfordii HOM05D000265 ORTHO05D000161 4.8e-10 68.2 124 40.3
Duzib093G1323 Durio zibethinus HOM05D000265 ORTHO05D000161 6.3e-10 67.8 116 46.6
CiPaw.10G017800 Carya illinoinensis HOM05D000265 ORTHO05D000161 8.3e-10 67.4 121 37.2
Gohir.A04G057900 Gossypium hirsutum HOM05D000265 ORTHO05D000161 1.1e-09 67.0 131 42.0
Manes.09G045500 Manihot esculenta HOM05D000265 ORTHO05D000161 1.1e-09 67.0 123 41.5
Glyma.03G202200 Glycine max HOM05D000265 ORTHO05D000161 1.8e-09 66.2 126 39.7
Gohir.A09G134000 Gossypium hirsutum HOM05D000265 ORTHO05D000161 1.8e-09 66.2 116 39.7
Gohir.D09G130400 Gossypium hirsutum HOM05D000265 ORTHO05D000161 1.8e-09 66.2 116 39.7
Gorai.006G149200 Gossypium raimondii HOM05D000265 ORTHO05D000161 1.8e-09 66.2 116 39.7
Nn2g14312 Nelumbo nucifera HOM05D000265 ORTHO05D000161 1.8e-09 66.2 124 41.1
MD14G1039500 Malus domestica HOM05D000265 ORTHO05D000161 2.4e-09 65.9 119 41.2
QL07p036668 Quercus lobata HOM05D000265 ORTHO05D000161 2.4e-09 65.9 124 39.5
Prupe.7G094400 Prunus persica HOM05D000265 ORTHO05D000161 3.1e-09 65.5 115 43.5
VMungo1383G2867 Vigna mungo HOM05D000265 ORTHO05D000161 4.1e-09 65.1 125 36.8
TWI53G0940 Tripterygium wilfordii HOM05D000265 ORTHO05D000161 7.0e-09 64.3 105 42.9
Peaxi162Scf00211g00411 Petunia axillaris HOM05D000265 ORTHO05D000161 2.7e-08 62.4 110 40.9
Rhsim03G0064400 Rhododendron simsii HOM05D000265 ORTHO05D000161 2.7e-08 62.4 121 38.8
ClCG01G015030 Citrullus lanatus HOM05D000265 ORTHO05D000161 3.5e-08 62.0 102 46.1
VMungo1350G0001 Vigna mungo HOM05D000265 ORTHO05D000161 3.5e-08 62.0 111 37.8
PSO384G4446 Papaver somniferum HOM05D000265 ORTHO05D000161 5.9e-08 61.2 117 34.2
CANSAT64G0347 Cannabis sativa HOM05D000265 ORTHO05D000161 2.3e-07 59.3 126 34.1
Glyma.19G199900 Glycine max HOM05D000265 ORTHO05D000161 2.9e-07 58.9 73 49.3
vmacro07478 Vaccinium macrocarpon HOM05D000265 ORTHO05D000161 2.9e-07 58.9 121 31.4
Actinidia07942 Actinidia chinensis HOM05D000265 ORTHO05D000161 3.8e-07 58.5 122 39.3
Nitab4.5_0005513g0010 Nicotiana tabacum HOM05D000265 ORTHO05D000161 3.8e-07 58.5 124 38.7
PSO339G4612 Papaver somniferum HOM05D000265 ORTHO05D000161 3.8e-07 58.5 113 33.6
Solyc01g007090.1 Solanum lycopersicum HOM05D000265 ORTHO05D000161 3.8e-07 58.5 130 33.8
arahy.Tifrunner.gnm1.ann1.V6MC97 Arachis hypogaea HOM05D000265 ORTHO05D000161 5.0e-07 58.2 100 40.0
CAN.G574.9 Capsicum annuum HOM05D000265 ORTHO05D000161 5.0e-07 58.2 133 32.3
Medtr7g106260 Medicago truncatula HOM05D000265 ORTHO05D000161 5.0e-07 58.2 83 48.2
Nitab4.5_0002686g0010 Nicotiana tabacum HOM05D000265 ORTHO05D000161 5.0e-07 58.2 132 35.6
FvH4_6g20330 Fragaria vesca HOM05D000265 ORTHO05D000161 6.6e-07 57.8 116 40.5
FAN14G3871 Fragaria x ananassa HOM05D000265 ORTHO05D000161 6.6e-07 57.8 116 40.5
Hma1.2p1_0079F.1_g041810 Hydrangea macrophylla HOM05D000265 ORTHO05D000161 8.6e-07 57.4 123 35.0
PGSC0003DMG400028146 Solanum tuberosum HOM05D000265 ORTHO05D000161 8.6e-07 57.4 116 34.5
PGSC0003DMG400037538 Solanum tuberosum HOM05D000265 ORTHO05D000161 8.6e-07 57.4 127 34.6
Nitab4.5_0000077g0020 Nicotiana tabacum HOM05D000265 ORTHO05D016910 1.1e-06 57.0 127 36.2
Sopen10g032400 Solanum pennellii HOM05D000265 ORTHO05D000161 1.1e-06 57.0 117 35.9
PGSC0003DMG400036570 Solanum tuberosum HOM05D000265 ORTHO05D000161 1.9e-06 56.2 126 34.1
Actinidia06182 Actinidia chinensis HOM05D000265 ORTHO05D000161 2.5e-06 55.8 122 40.2
CiPaw.09G021100 Carya illinoinensis HOM05D000265 ORTHO05D000161 2.5e-06 55.8 120 38.3
TAR633G0444 Trochodendron aralioides HOM05D000265 ORTHO05D000161 2.5e-06 55.8 114 35.1
VMungo1383G0610 Vigna mungo HOM05D000265 ORTHO05D000161 4.2e-06 55.1 69 50.7
BcaC01g03166 Brassica carinata HOM05D000265 ORTHO05D000161 5.5e-06 54.7 119 33.6
CAN.G574.12 Capsicum annuum HOM05D000265 ORTHO05D000161 5.5e-06 54.7 139 31.7
CARHR086230 Cardamine hirsuta HOM05D000265 ORTHO05D000161 5.5e-06 54.7 116 32.8
Lsat_1_v5_gn_2_53500 Lactuca sativa HOM05D000265 ORTHO05D000161 5.5e-06 54.7 114 32.5
BcaB06g25593 Brassica carinata HOM05D000265 ORTHO05D000161 7.2e-06 54.3 121 33.1
FAN05G0045 Fragaria x ananassa HOM05D000265 ORTHO05D000161 7.2e-06 54.3 116 38.8
FAN05G3207 Fragaria x ananassa HOM05D000265 ORTHO05D000161 7.2e-06 54.3 116 38.8
Nitab4.5_0017141g0010 Nicotiana tabacum HOM05D000265 ORTHO05D000161 7.2e-06 54.3 133 33.8
Solyc10g081890.2 Solanum lycopersicum HOM05D000265 ORTHO05D000161 7.2e-06 54.3 117 35.0
Sopen01g003070 Solanum pennellii HOM05D000265 ORTHO05D000161 9.5e-06 53.9 112 34.8


User provided reference genes

Program Settings