Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G006950 Citrullus lanatus HOM05D006757 ORTHO05D004651 0.0e+00 1363.2 792 100.0
MELO3C005216.2 Cucumis melo HOM05D006757 ORTHO05D004651 0.0e+00 1185.2 801 88.9
CsaV3_5G017370 Cucumis sativus L. HOM05D006757 ORTHO05D004651 0.0e+00 1154.0 803 87.3
Sed0027541 Sechium edule HOM05D006757 ORTHO05D004651 6.7e-212 741.5 584 82.4
Thecc.02G299300 Theobroma cacao HOM05D006757 ORTHO05D004651 4.6e-168 595.9 797 54.7
Prupe.1G340900 Prunus persica HOM05D006757 ORTHO05D004651 2.5e-166 590.1 669 50.1
CiPaw.05G164400 Carya illinoinensis HOM05D006757 ORTHO05D004651 4.3e-166 589.3 740 57.4
Duzib248G0842 Durio zibethinus HOM05D006757 ORTHO05D004651 5.6e-166 589.0 801 54.4
QL03p041041 Quercus lobata HOM05D006757 ORTHO05D004651 2.1e-165 587.0 910 49.0
Gohir.A01G144000 Gossypium hirsutum HOM05D006757 ORTHO05D004651 1.1e-161 574.7 802 52.0
Gohir.D01G136700 Gossypium hirsutum HOM05D006757 ORTHO05D004651 1.9e-161 573.9 802 52.6
Gorai.002G169200 Gossypium raimondii HOM05D006757 ORTHO05D004651 4.6e-160 569.3 800 52.5
Dinv02708 Davidia involucrata HOM05D006757 ORTHO05D004651 7.8e-160 568.5 798 53.3
FAN17G2536 Fragaria x ananassa HOM05D006757 ORTHO05D004651 1.9e-158 563.9 675 48.3
RcHm_v2.0_Chr4g0445651 Rosa chinensis HOM05D006757 ORTHO05D004651 1.6e-157 560.8 764 53.9
CANSAT78G0289 Cannabis sativa HOM05D006757 ORTHO05D004651 6.2e-157 558.9 771 55.4
MD16G1009700 Malus domestica HOM05D006757 ORTHO05D004651 6.2e-157 558.9 683 48.3
TWI53G1444 Tripterygium wilfordii HOM05D006757 ORTHO05D004651 1.4e-156 557.8 805 51.8
FAN12G3615 Fragaria x ananassa HOM05D006757 ORTHO05D004651 3.2e-153 546.6 662 47.7
CSS0018736 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 5.1e-151 539.3 768 52.6
COL.COLO4_27539 Corchorus olitorius HOM05D006757 ORTHO05D004651 5.1e-151 539.3 736 54.9
TAR622G0072 Trochodendron aralioides HOM05D006757 ORTHO05D004651 1.5e-150 537.7 799 50.7
PGR142G0977 Punica granatum HOM05D006757 ORTHO05D004651 1.6e-149 534.3 724 52.9
Actinidia12418 Actinidia chinensis HOM05D006757 ORTHO05D004651 4.0e-148 529.6 729 52.9
GSVIVG01010290001 Vitis vinifera HOM05D006757 ORTHO05D004651 9.3e-145 518.5 710 54.9
Ca_11197_v3 Cicer arietinum L. HOM05D006757 ORTHO05D004651 1.2e-144 518.1 692 46.4
Sabra10G0071900 Salix brachista HOM05D006757 ORTHO05D004651 3.5e-144 516.5 630 47.8
Nn4g24781 Nelumbo nucifera HOM05D006757 ORTHO05D004651 1.3e-143 514.6 747 50.2
arahy.Tifrunner.gnm1.ann1.CLVE3A Arachis hypogaea HOM05D006757 ORTHO05D004651 3.0e-143 513.5 795 51.2
FAN07G0462 Fragaria x ananassa HOM05D006757 ORTHO05D004651 6.6e-143 512.3 659 45.8
arahy.Tifrunner.gnm1.ann1.18R96V Arachis hypogaea HOM05D006757 ORTHO05D004651 8.7e-143 511.9 780 51.4
Lj5g0011768 Lotus japonicus HOM05D006757 ORTHO05D004651 1.1e-142 511.5 788 51.3
FAN22G1875 Fragaria x ananassa HOM05D006757 ORTHO05D004651 1.3e-141 508.1 825 48.6
Lalb_Chr21g0306871 Lupinus albus HOM05D006757 ORTHO05D004651 2.4e-140 503.8 670 45.7
Lj6C727G2 Lonicera japonica HOM05D006757 ORTHO05D004651 9.0e-140 501.9 835 46.3
TPR.G2437 Trifolium pratense HOM05D006757 ORTHO05D004651 1.2e-139 501.5 681 45.7
Glyma.10G280500 Glycine max HOM05D006757 ORTHO05D004651 9.9e-139 498.4 722 52.9
Medtr1g112280 Medicago truncatula HOM05D006757 ORTHO05D004651 1.7e-138 497.7 778 51.4
Phvul.007G020500 Phaseolus vulgaris HOM05D006757 ORTHO05D004651 3.2e-137 493.4 719 53.0
VMungo0720G1053 Vigna mungo HOM05D006757 ORTHO05D004651 1.6e-136 491.1 741 51.0
Psat6g231440 Pisum sativum HOM05D006757 ORTHO05D004651 5.1e-135 486.1 717 52.3
Ciclev10006553m.g Citrus clementina HOM05D006757 ORTHO05D004651 4.0e-132 476.5 642 55.0
FvH4_4g36030 Fragaria vesca HOM05D006757 ORTHO05D004651 1.5e-131 474.6 656 55.6
Rhsim09G0078600 Rhododendron simsii HOM05D006757 ORTHO05D004651 1.5e-131 474.6 862 46.1
Solyc01g007880.4 Solanum lycopersicum HOM05D006757 ORTHO05D004651 3.4e-131 473.4 738 48.5
Sopen01g003410 Solanum pennellii HOM05D006757 ORTHO05D004651 4.5e-131 473.0 731 48.4
EL10Ac6g15397 Beta vulgaris HOM05D006757 ORTHO05D004651 3.8e-130 469.9 780 47.3
Eucgr.G02041 Eucalyptus grandis HOM05D006757 ORTHO05D004651 3.5e-128 463.4 675 54.4
Manes.17G092000 Manihot esculenta HOM05D006757 ORTHO05D004651 7.9e-128 462.2 654 55.4
Aqoxy3G04184 Aquilegia oxysepala HOM05D006757 ORTHO05D004651 2.5e-126 457.2 794 46.9
PSO063G3495 Papaver somniferum HOM05D006757 ORTHO05D004651 4.6e-120 436.4 614 42.3
AUR62017786 Chenopodium quinoa HOM05D006757 ORTHO05D004651 3.0e-119 433.7 758 46.3
HanXRQChr12g0365871 Helianthus annuus HOM05D006757 ORTHO05D004651 4.3e-118 429.9 760 47.8
MSTRG.2098 Avicennia marina HOM05D006757 ORTHO05D004651 1.4e-116 424.9 686 40.1
Migut.E00572 Erythranthe guttata HOM05D006757 ORTHO05D004651 1.0e-114 418.7 726 47.7
ECA233G5323 Erigeron canadensis HOM05D006757 ORTHO05D004651 1.1e-113 415.2 728 47.4
ATR0807G004 Amborella trichopoda HOM05D006757 ORTHO05D004651 1.6e-112 411.4 628 39.5
vmacro10765 Vaccinium macrocarpon HOM05D006757 ORTHO05D004651 2.3e-111 407.5 702 48.6
Sp5g30140 Schrenkiella parvula HOM05D006757 ORTHO05D004651 3.9e-111 406.8 714 47.6
Nitab4.5_0004543g0020 Nicotiana tabacum HOM05D006757 ORTHO05D004651 7.4e-110 402.5 689 45.1
BcaC08g46956 Brassica carinata HOM05D006757 ORTHO05D004651 9.7e-110 402.1 727 46.9
Atru.chr11.1028 Acer truncatum HOM05D006757 ORTHO05D004651 1.7e-109 401.4 470 48.5
AUR62003477 Chenopodium quinoa HOM05D006757 ORTHO05D004651 2.2e-109 401.0 669 48.7
Cc11_g03340 Coffea canephora HOM05D006757 ORTHO05D004651 4.1e-108 396.7 683 47.6
Lsat_1_v5_gn_8_33901 Lactuca sativa HOM05D006757 ORTHO05D004651 4.1e-108 396.7 722 45.4
BraA07t31608Z Brassica rapa HOM05D006757 ORTHO05D004651 5.9e-107 392.9 717 47.7
AL2G34890 Arabidopsis lyrata HOM05D006757 ORTHO05D004651 7.7e-107 392.5 715 44.5
AT1G75010 Arabidopsis thaliana HOM05D006757 ORTHO05D004651 3.8e-106 390.2 714 45.4
A07p40640 Brassica napus HOM05D006757 ORTHO05D004651 1.9e-105 387.9 709 47.5
BcaC08g46933 Brassica carinata HOM05D006757 ORTHO05D004651 9.4e-105 385.6 711 47.5
BolC6t39938H Brassica oleracea HOM05D006757 ORTHO05D004651 5.1e-103 379.8 712 47.3
Thhalv10018185m.g Eutrema salsugineum HOM05D006757 ORTHO05D004651 1.5e-102 378.3 718 45.8
C06p49010 Brassica napus HOM05D006757 ORTHO05D004651 9.7e-102 375.6 737 46.4
Aa31LG4G5230 Aethionema arabicum HOM05D006757 ORTHO05D004651 2.2e-101 374.4 731 44.7
DCAR_030323 Daucus carota HOM05D006757 ORTHO05D004651 1.1e-100 372.1 669 39.2
THA.LOC104809054 Tarenaya hassleriana HOM05D006757 ORTHO05D004651 1.4e-100 371.7 727 45.4
Carub.0002s2179 Capsella rubella HOM05D006757 ORTHO05D004651 3.1e-100 370.5 708 45.2
Cpa.g.sc2.85 Carica papaya HOM05D006757 ORTHO05D004651 1.5e-99 368.2 475 44.8
SGA_v2.0_scaffold470G52072 Striga asiatica HOM05D006757 ORTHO05D004651 3.6e-96 357.1 736 43.5
Potri.010G099300 Populus trichocarpa HOM05D006757 ORTHO05D004651 2.0e-91 341.3 565 53.5
CARHR068320 Cardamine hirsuta HOM05D006757 ORTHO05D004651 1.4e-87 328.6 638 45.8
Peaxi162Scf00097g00232 Petunia axillaris HOM05D006757 ORTHO05D004651 4.1e-84 317.0 648 42.7
CAN.G282.84 Capsicum annuum HOM05D006757 ORTHO05D004651 3.0e-79 300.8 560 47.5
Os09g0555600 Oryza sativa ssp. japonica HOM05D006757 ORTHO05D004651 3.0e-79 300.8 608 35.0
HPP92_025367 Vanilla planifolia HOM05D006757 ORTHO05D004651 2.8e-77 294.3 719 41.4
SalBow2G2705 Salvia bowleyana HOM05D006757 ORTHO05D004651 3.3e-73 280.8 589 43.0
Sc17g0005480 Simmondsia chinensis HOM05D006757 ORTHO05D004651 1.0e-71 275.8 498 36.1
BcaNung05827 Brassica carinata HOM05D006757 ORTHO05D004651 1.4e-60 238.8 598 34.1
Nitab4.5_0000944g0040 Nicotiana tabacum HOM05D006757 ORTHO05D004651 2.0e-59 235.0 249 46.6
unitig_699.g19471 Utricularia gibba HOM05D006757 ORTHO05D004651 2.0e-59 235.0 710 36.6
Haze_10724 Corylus avellana HOM05D006757 ORTHO05D004651 8.9e-55 219.5 342 43.0
Oeu001141.1 Olea europaea HOM05D006757 ORTHO05D004651 6.0e-51 206.8 278 43.5
BolC2t09256H Brassica oleracea HOM05D006757 ORTHO05D004651 3.4e-46 191.0 516 31.0
Hma1.2p1_0933F.1_g238410 Hydrangea macrophylla HOM05D006757 ORTHO05D004651 7.5e-46 189.9 466 48.1
Hma1.2p1_0933F.1_g238400 Hydrangea macrophylla HOM05D006757 ORTHO05D004651 9.2e-44 183.0 355 37.2
BcaC03g15537 Brassica carinata HOM05D006757 ORTHO05D004651 5.2e-39 167.2 478 31.2
CSS0036943 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 2.9e-37 161.4 175 49.1
Mapoly0058s0047 Marchantia polymorpha HOM05D006757 ORTHO05D004651 8.4e-37 159.8 662 25.1
Hund12802 Selenicereus undatus HOM05D006757 ORTHO05D004651 1.4e-36 159.1 427 46.4
SalBow2G2121 Salvia bowleyana HOM05D006757 ORTHO05D004651 1.9e-28 132.1 224 39.3
COL.COLO4_13886 Corchorus olitorius HOM05D003428 ORTHO05D004131 9.0e-23 113.2 310 32.9
CSS0016054 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 2.9e-21 108.2 220 39.5
Actinidia37474 Actinidia chinensis HOM05D006757 ORTHO05D004651 1.0e-18 99.8 131 49.6
SEGI_38740 Sequoiadendron giganteum HOM05D006757 ORTHO05D004651 8.7e-18 96.7 188 34.0
Zm00001eb320640 Zea mays HOM05D006757 ORTHO05D004651 1.5e-17 95.9 276 31.2
Peaxi162Scf00097g02317 Petunia axillaris HOM05D006757 ORTHO05D004651 6.9e-15 87.0 83 51.8
CDE04G1248 Ceratophyllum demersum HOM05D006757 ORTHO05D004651 9.0e-15 86.7 93 51.6
Ciclev10006110m.g Citrus clementina HOM05D006757 ORTHO05D004651 4.5e-14 84.3 73 58.9
CSS0046499 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 6.4e-13 80.5 44 77.3
Cc11_g03350 Coffea canephora HOM05D006757 ORTHO05D004651 3.2e-12 78.2 130 34.6
CDE04G0645 Ceratophyllum demersum HOM05D006757 ORTHO05D004651 4.2e-12 77.8 257 29.2
Glyma.20G109150 Glycine max HOM05D006757 ORTHO05D004651 1.6e-11 75.9 81 49.4
vmacro10766 Vaccinium macrocarpon HOM05D006757 ORTHO05D004651 1.0e-10 73.2 198 32.3
Hma1.2p1_0933F.1_g238390 Hydrangea macrophylla HOM05D006757 ORTHO05D034208 4.3e-09 67.8 116 38.8
Haze_10728 Corylus avellana HOM05D063416 ORTHO05D034208 1.6e-08 65.9 105 41.0


User provided reference genes

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