Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 3.2e-48 194.9 107 100.0
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 6.6e-38 160.6 108 77.8
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 4.3e-29 131.3 107 70.1
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 1.4e-19 99.8 108 50.9
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 6.9e-19 97.4 113 53.1
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.5e-18 96.3 110 50.9
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 9.9e-18 93.6 107 49.5
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 1.7e-17 92.8 114 50.0
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 4.2e-16 88.2 108 46.3
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 5.5e-16 87.8 113 48.7
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 5.5e-16 87.8 107 48.6
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 9.3e-16 87.0 110 46.4
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 1.6e-15 86.3 108 46.3
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.6e-15 86.3 108 49.1
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 2.1e-15 85.9 107 45.8
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 3.5e-15 85.1 108 45.4
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 6.0e-15 84.3 110 47.3
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 6.0e-15 84.3 69 60.9
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 7.9e-15 84.0 109 48.6
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.0e-14 83.6 110 47.3
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.8e-14 82.8 111 44.1
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 3.0e-14 82.0 110 45.5
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 8.7e-14 80.5 113 46.9
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.9e-13 79.3 113 46.9
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 2.5e-13 79.0 106 45.3
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 3.3e-13 78.6 113 46.0
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 5.6e-13 77.8 117 45.3
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 7.4e-13 77.4 108 44.4
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 7.4e-13 77.4 112 43.8
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 9.6e-13 77.0 109 46.8
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 1.3e-12 76.6 112 48.2
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 1.6e-12 76.3 112 43.8
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 2.8e-12 75.5 109 40.4
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 2.8e-12 75.5 109 40.4
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 2.8e-12 75.5 109 45.9
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 3.7e-12 75.1 107 43.9
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 3.7e-12 75.1 71 57.7
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 4.8e-12 74.7 104 42.3
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 6.2e-12 74.3 109 45.9
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 8.2e-12 73.9 112 43.8
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.1e-11 73.6 64 57.8
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 1.8e-11 72.8 65 58.5
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 1.8e-11 72.8 110 42.7
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.8e-11 72.8 107 42.1
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 1.8e-11 72.8 66 56.1
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 2.4e-11 72.4 112 40.2
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 2.4e-11 72.4 66 56.1
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.4e-11 72.4 66 56.1
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 3.1e-11 72.0 108 42.6
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 3.1e-11 72.0 66 54.5
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 5.3e-11 71.2 107 43.9
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 6.9e-11 70.9 65 55.4
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 9.0e-11 70.5 109 41.3
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.2e-10 70.1 107 42.1
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.5e-10 69.7 107 42.1
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 3.4e-10 68.6 107 40.2
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 7.6e-10 67.4 71 53.5
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 1.3e-09 66.6 109 41.3
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.7e-09 66.2 107 40.2
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 1.7e-09 66.2 108 40.7
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 2.2e-09 65.9 65 52.3
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 2.9e-09 65.5 107 39.3
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 3.8e-09 65.1 108 40.7
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 3.8e-09 65.1 66 54.5
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 6.5e-09 64.3 109 41.3
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 1.1e-08 63.5 62 51.6
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 1.4e-08 63.2 106 37.7
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 1.4e-08 63.2 70 50.0
Sp5g23900 Schrenkiella parvula HOM05D005816 ORTHO05D006915 1.4e-08 63.2 110 37.3
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 1.9e-08 62.8 103 42.7
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 2.5e-08 62.4 62 50.0
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 2.5e-08 62.4 72 50.0
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 2.5e-08 62.4 62 50.0
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 3.2e-08 62.0 108 37.0
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 3.2e-08 62.0 112 41.1
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 3.2e-08 62.0 66 50.0
Lj5g0018872 Lotus japonicus HOM05D005816 ORTHO05D006915 3.2e-08 62.0 97 39.2
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 3.2e-08 62.0 110 40.0
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 3.2e-08 62.0 68 52.9
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 4.2e-08 61.6 69 52.2
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 4.2e-08 61.6 66 50.0
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 5.5e-08 61.2 106 40.6
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 5.5e-08 61.2 102 41.2
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 7.1e-08 60.8 70 48.6
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 7.1e-08 60.8 65 52.3
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.2e-07 60.1 66 48.5
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 2.1e-07 59.3 108 38.9
QL10p023002 Quercus lobata HOM05D005816 ORTHO05D006915 2.1e-07 59.3 107 36.4
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 2.1e-07 59.3 111 37.8
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 2.1e-07 59.3 111 33.3
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 3.5e-07 58.5 109 37.6
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 6.0e-07 57.8 62 48.4
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 6.0e-07 57.8 109 39.4
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 7.9e-07 57.4 64 48.4
Eucgr.B00694 Eucalyptus grandis HOM05D005816 ORTHO05D006915 7.9e-07 57.4 62 48.4
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 7.9e-07 57.4 69 50.7
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 7.9e-07 57.4 70 45.7
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 7.9e-07 57.4 117 37.6
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 1.0e-06 57.0 109 37.6
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.0e-06 57.0 121 38.8
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.0e-06 57.0 105 37.1
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 1.0e-06 57.0 113 37.2
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 1.0e-06 57.0 65 46.2
Psat4g043720 Pisum sativum HOM05D005816 ORTHO05D006915 1.8e-06 56.2 62 48.4
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 2.3e-06 55.8 110 40.9
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 2.3e-06 55.8 62 48.4
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 2.3e-06 55.8 64 45.3
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 2.3e-06 55.8 62 46.8
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 5.1e-06 54.7 113 38.9
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 5.1e-06 54.7 113 38.9
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 5.1e-06 54.7 116 34.5
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 5.1e-06 54.7 62 46.8
PGR044G2006 Punica granatum HOM05D005816 ORTHO05D006915 5.1e-06 54.7 106 35.8
MELO3C017284.2 Cucumis melo HOM05D005816 ORTHO05D006915 6.7e-06 54.3 70 47.1
Gohir.A03G103500 Gossypium hirsutum HOM05D007541 ORTHO05D009404 6.7e-06 54.3 54 51.9
Gohir.D02G128700 Gossypium hirsutum HOM05D007541 ORTHO05D009404 6.7e-06 54.3 54 51.9
Gorai.005G144400 Gossypium raimondii HOM05D007541 ORTHO05D009404 6.7e-06 54.3 54 51.9
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 6.7e-06 54.3 112 35.7
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 6.7e-06 54.3 70 50.0
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 8.7e-06 53.9 64 46.9
MBI16_g06255_MAGBIO Magnolia biondii HOM05D005816 ORTHO05D006915 8.7e-06 53.9 111 39.6


User provided reference genes

Program Settings