Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 0.0e+00 1210.7 659 100.0
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 7.0e-247 857.4 662 76.9
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 9.2e-239 830.5 666 75.5
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 2.4e-138 496.9 690 53.8
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 7.7e-129 465.3 963 42.2
ClCG01G022640 Citrullus lanatus HOM05D013728 ORTHO05D003557 1.7e-107 394.4 362 68.2
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 3.9e-104 383.3 269 78.8
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 2.5e-34 151.4 706 30.3
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 1.4e-32 145.6 740 29.6
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.6e-28 132.1 263 42.2
ClCG04G001820 Citrullus lanatus HOM05D013728 ORTHO05D003557 1.0e-27 129.4 100 74.0
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 2.9e-27 127.9 712 28.9
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 5.0e-27 127.1 655 29.2
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 6.5e-27 126.7 330 35.5
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 3.2e-26 124.4 296 38.5
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 4.7e-25 120.6 678 29.2
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 6.1e-25 120.2 329 35.9
Sed0014700 Sechium edule HOM05D013728 ORTHO05D003557 1.4e-24 119.0 146 58.2
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 3.0e-24 117.9 266 38.0
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 6.8e-24 116.7 370 33.2
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 1.5e-23 115.5 733 27.4
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 2.0e-23 115.2 288 35.1
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 2.6e-23 114.8 322 35.7
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 3.4e-23 114.4 672 29.6
ClCG06G018410 Citrullus lanatus HOM05D013728 ORTHO05D003557 2.8e-22 111.3 61 95.1
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 4.8e-22 110.5 694 29.4
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 1.8e-21 108.6 355 33.8
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 7.0e-21 106.7 629 30.5
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 7.0e-21 106.7 836 27.0
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 9.1e-21 106.3 723 28.1
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 2.0e-20 105.1 296 34.5
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.0e-19 102.8 743 29.1
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 2.9e-19 101.3 727 28.1
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 5.0e-19 100.5 681 29.2
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 1.9e-18 98.6 401 34.2
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 2.5e-18 98.2 130 50.0
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 3.2e-18 97.8 836 26.7
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 3.2e-18 97.8 109 57.8
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 4.2e-18 97.4 208 39.4
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 7.2e-18 96.7 364 30.8
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.6e-17 95.5 368 32.9
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 2.1e-17 95.1 587 29.5
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 2.1e-17 95.1 208 41.3
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 2.1e-17 95.1 221 37.6
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 2.7e-17 94.7 366 31.7
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 3.6e-17 94.4 800 25.0
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 3.6e-17 94.4 738 27.8
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 4.7e-17 94.0 519 28.1
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.0e-16 92.8 351 31.6
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 1.4e-16 92.4 216 40.3
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 1.4e-16 92.4 716 26.0
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 1.4e-16 92.4 716 27.2
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 2.3e-16 91.7 197 35.0
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 2.3e-16 91.7 197 35.0
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 2.3e-16 91.7 126 50.0
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 3.0e-16 91.3 683 26.9
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 4.0e-16 90.9 510 30.2
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 4.0e-16 90.9 370 32.7
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 5.2e-16 90.5 704 26.0
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 5.2e-16 90.5 445 29.2
Sed0016406 Sechium edule HOM05D013728 ORTHO05D003557 6.8e-16 90.1 294 39.8
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 8.8e-16 89.7 609 28.6
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 1.2e-15 89.4 159 40.3
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 1.2e-15 89.4 331 32.9
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 1.2e-15 89.4 507 29.2
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.2e-15 89.4 475 29.1
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 1.5e-15 89.0 356 34.0
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 2.0e-15 88.6 360 30.6
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 2.6e-15 88.2 110 59.1
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 2.6e-15 88.2 812 26.0
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 3.4e-15 87.8 716 26.1
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 4.4e-15 87.4 688 26.9
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 5.7e-15 87.0 334 32.0
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 7.5e-15 86.7 309 31.4
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 2.2e-14 85.1 513 29.2
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 2.8e-14 84.7 259 29.7
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 2.8e-14 84.7 743 27.1
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 4.9e-14 84.0 679 27.5
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 4.9e-14 84.0 388 28.6
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 6.3e-14 83.6 671 25.6
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 6.3e-14 83.6 100 47.0
MELO3C009867.2 Cucumis melo HOM05D013728 ORTHO05D003557 8.3e-14 83.2 123 47.2
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 1.1e-13 82.8 469 29.6
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.1e-13 82.8 378 31.0
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 1.4e-13 82.4 332 30.4
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 1.8e-13 82.0 665 26.0
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 1.8e-13 82.0 715 26.3
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 2.4e-13 81.6 751 26.5
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 3.1e-13 81.3 496 28.2
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 4.1e-13 80.9 688 26.9
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 4.1e-13 80.9 562 27.2
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 7.0e-13 80.1 682 25.5
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 9.2e-13 79.7 480 28.5
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 1.2e-12 79.3 473 29.0
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 1.6e-12 79.0 516 27.5
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 2.0e-12 78.6 58 67.2
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 2.7e-12 78.2 509 29.1
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 4.5e-12 77.4 550 28.0
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 5.9e-12 77.0 770 26.4
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 5.9e-12 77.0 545 28.8
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 1.0e-11 76.3 713 26.8
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 1.3e-11 75.9 689 26.9
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 1.7e-11 75.5 738 25.9
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 1.7e-11 75.5 85 47.1
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 2.3e-11 75.1 634 27.9
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.9e-11 74.7 563 29.8
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 5.0e-11 73.9 499 28.9
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 5.0e-11 73.9 710 25.8
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 6.6e-11 73.6 101 49.5
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 8.6e-11 73.2 700 26.0
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 8.6e-11 73.2 257 31.1
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 3.3e-10 71.2 791 25.2
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 7.3e-10 70.1 715 25.6
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 1.6e-09 68.9 46 73.9
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 2.1e-09 68.6 58 58.6
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 2.1e-09 68.6 792 26.0
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 2.1e-09 68.6 44 72.7
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 6.1e-09 67.0 675 24.0
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 6.1e-09 67.0 58 55.2
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 8.0e-09 66.6 689 26.6
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 8.0e-09 66.6 45 71.1
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 1.0e-08 66.2 467 29.3
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 1.0e-08 66.2 467 29.3
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 1.4e-08 65.9 129 38.0
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 2.3e-08 65.1 517 25.5
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 3.0e-08 64.7 636 25.5
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 4.0e-08 64.3 766 25.8
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 5.2e-08 63.9 503 28.4
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 1.2e-07 62.8 39 74.4
Pp3c1_19370 Physcomitrium patens HOM05D027683 ORTHO05D003557 5.7e-07 60.5 62 56.5
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 9.8e-07 59.7 488 26.8
MELO3C028918.2 Cucumis melo HOM05D004299 ORTHO05D003557 1.3e-06 59.3 35 80.0
Pp3c2_18130 Physcomitrium patens HOM05D027683 ORTHO05D003557 1.3e-06 59.3 39 74.4
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 1.7e-06 58.9 537 25.9
MELO3C009868.2 Cucumis melo HOM05D013728 ORTHO05D003557 2.2e-06 58.5 61 63.9
BcaC01g02808 Brassica carinata HOM05D004299 ORTHO05D003557 3.7e-06 57.8 431 26.5
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 3.7e-06 57.8 36 75.0
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 3.7e-06 57.8 36 75.0
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 6.4e-06 57.0 549 25.5
PSO017G4482 Papaver somniferum HOM05D018639 ORTHO05D037265 6.4e-06 57.0 285 24.6
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 8.3e-06 56.6 551 27.4
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 8.3e-06 56.6 551 27.4
Zm00001eb063140 Zea mays HOM05D021310 ORTHO05D003557 8.3e-06 56.6 277 27.4


User provided reference genes

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