Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G004590 Citrullus lanatus HOM05D003457 ORTHO05D009249 6.1e-208 727.2 366 100.0
ClCG00G005020 Citrullus lanatus HOM05D003457 ORTHO05D009249 2.9e-186 655.2 330 100.0
ClCG01G004630 Citrullus lanatus HOM05D003457 ORTHO05D009249 2.9e-186 655.2 330 100.0
MELO3C033815.2 Cucumis melo HOM05D003457 ORTHO05D009249 9.2e-148 527.3 328 83.5
CsaV3_5G004840 Cucumis sativus L. HOM05D003457 ORTHO05D009249 4.3e-145 518.5 328 82.6
Gohir.D04G000050 Gossypium hirsutum HOM05D003457 ORTHO05D009249 2.9e-40 170.2 309 39.8
Duzib068G0780 Durio zibethinus HOM05D003457 ORTHO05D009249 4.9e-40 169.5 312 39.4
Thecc.03G208400 Theobroma cacao HOM05D003457 ORTHO05D009249 1.4e-39 167.9 317 40.4
FAN03G1743 Fragaria x ananassa HOM05D003457 ORTHO05D009746 4.1e-39 166.4 289 41.9
FvH4_7g32890 Fragaria vesca HOM05D003457 ORTHO05D009249 9.2e-39 165.2 262 43.1
FAN10G0211 Fragaria x ananassa HOM05D003457 ORTHO05D009746 4.6e-38 162.9 262 42.7
Cfa016162 Carpinus fangiana HOM05D003457 ORTHO05D009249 6.0e-38 162.5 339 38.3
Duzib084G1096 Durio zibethinus HOM05D003457 ORTHO05D009249 1.0e-37 161.8 315 37.8
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 3.0e-37 160.2 304 41.4
Gohir.D04G000080 Gossypium hirsutum HOM05D003457 ORTHO05D009249 3.9e-37 159.8 315 39.4
Gorai.012G000700 Gossypium raimondii HOM05D003457 ORTHO05D009249 3.9e-37 159.8 315 39.4
Manes.01G043100 Manihot esculenta HOM05D003457 ORTHO05D009249 6.6e-37 159.1 333 37.5
Duzib205G0475 Durio zibethinus HOM05D003457 ORTHO05D009249 1.1e-36 158.3 311 39.9
Dinv35380 Davidia involucrata HOM05D003457 ORTHO05D009746 1.6e-35 154.5 252 38.9
MD07G1298800 Malus domestica HOM05D003457 ORTHO05D009249 2.8e-35 153.7 278 40.3
MD01G1228100 Malus domestica HOM05D003457 ORTHO05D009249 6.2e-35 152.5 335 39.1
FAN01G1561 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.1e-34 151.8 309 38.2
CiPaw.06G041400 Carya illinoinensis HOM05D003457 ORTHO05D009249 2.3e-34 150.6 298 40.3
FAN10G3191 Fragaria x ananassa HOM05D003457 ORTHO05D009746 2.3e-34 150.6 245 42.0
Actinidia34268 Actinidia chinensis HOM05D003457 ORTHO05D009249 2.0e-33 147.5 344 31.7
Prupe.2G318600 Prunus persica HOM05D003457 ORTHO05D009249 3.4e-33 146.7 331 36.9
Dinv29212 Davidia involucrata HOM05D003457 ORTHO05D009249 4.4e-33 146.4 295 36.9
Potri.015G005100 Populus trichocarpa HOM05D003457 ORTHO05D009249 4.4e-33 146.4 259 42.5
RcHm_v2.0_Chr1g0382841 Rosa chinensis HOM05D003457 ORTHO05D009249 5.8e-33 146.0 362 34.8
Actinidia08697 Actinidia chinensis HOM05D003457 ORTHO05D009249 4.9e-32 142.9 256 38.7
Ciclev10020653m.g Citrus clementina HOM05D003457 ORTHO05D009249 1.4e-31 141.4 325 36.6
PGR142G1344 Punica granatum HOM05D003457 ORTHO05D009249 9.2e-31 138.7 302 39.1
Nn1g00443 Nelumbo nucifera HOM05D003457 ORTHO05D009249 1.2e-30 138.3 272 37.5
Sabra15G0003600 Salix brachista HOM05D003457 ORTHO05D009249 1.6e-30 137.9 257 42.8
TWI23G0841 Tripterygium wilfordii HOM05D003457 ORTHO05D009249 7.8e-30 135.6 294 37.4
Aa31LG11G3740 Aethionema arabicum HOM05D003457 ORTHO05D009249 1.9e-28 131.0 283 36.0
TAR629G1045 Trochodendron aralioides HOM05D003457 ORTHO05D009249 4.3e-28 129.8 257 36.6
Sp2g22840 Schrenkiella parvula HOM05D003457 ORTHO05D009249 9.5e-28 128.6 286 36.7
Oeu037975.2 Olea europaea HOM05D003457 ORTHO05D009249 1.6e-27 127.9 278 38.1
TAR636G2436 Trochodendron aralioides HOM05D003457 ORTHO05D009249 6.2e-27 125.9 256 35.2
Rhsim03G0215300 Rhododendron simsii HOM05D003457 ORTHO05D009249 8.1e-27 125.6 247 36.4
THA.LOC104798986 Tarenaya hassleriana HOM05D003457 ORTHO05D009249 8.1e-27 125.6 278 38.5
Solyc03g081310.3 Solanum lycopersicum HOM05D003457 ORTHO05D009249 3.1e-26 123.6 275 34.9
PGSC0003DMG400000588 Solanum tuberosum HOM05D003457 ORTHO05D009249 3.1e-26 123.6 276 35.9
Eucgr.K00429 Eucalyptus grandis HOM05D003457 ORTHO05D009249 4.0e-26 123.2 307 35.5
Potri.012G021300 Populus trichocarpa HOM05D003457 ORTHO05D009249 4.0e-26 123.2 274 36.5
MBI12_g09299_MAGBIO Magnolia biondii HOM05D003457 ORTHO05D009249 6.8e-26 122.5 253 36.8
Sopen03g022030 Solanum pennellii HOM05D003457 ORTHO05D009249 8.9e-26 122.1 276 34.4
CSS0029860 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 4.4e-25 119.8 296 33.8
Medtr3g092670 Medicago truncatula HOM05D003457 ORTHO05D009249 7.6e-25 119.0 248 37.1
CSS0022238 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 1.7e-24 117.9 296 33.1
Migut.F00990 Erythranthe guttata HOM05D003457 ORTHO05D009249 1.7e-24 117.9 252 35.7
Carub.0006s2232 Capsella rubella HOM05D003457 ORTHO05D009249 2.2e-24 117.5 259 37.8
CARHR188920 Cardamine hirsuta HOM05D003457 ORTHO05D009249 6.4e-24 115.9 300 38.3
CAN.G303.15 Capsicum annuum HOM05D003457 ORTHO05D009249 1.1e-23 115.2 240 36.2
Sabra12G0012300 Salix brachista HOM05D003457 ORTHO05D009249 1.4e-23 114.8 269 37.2
AL6G36090 Arabidopsis lyrata HOM05D003457 ORTHO05D009249 5.4e-23 112.8 299 34.1
Nitab4.5_0005040g0050 Nicotiana tabacum HOM05D003457 ORTHO05D009249 5.4e-23 112.8 273 35.9
Thhalv10005511m.g Eutrema salsugineum HOM05D003457 ORTHO05D009249 9.2e-23 112.1 333 33.3
Nitab4.5_0000319g0070 Nicotiana tabacum HOM05D003457 ORTHO05D009249 1.2e-22 111.7 271 34.3
Aqoxy5G04336 Aquilegia oxysepala HOM05D003457 ORTHO05D009249 1.6e-22 111.3 248 34.3
AT5G24500 Arabidopsis thaliana HOM05D003457 ORTHO05D009249 2.1e-22 110.9 254 36.6
AUR62035619 Chenopodium quinoa HOM05D003457 ORTHO05D009249 2.1e-22 110.9 317 32.8
SalBow2G2220 Salvia bowleyana HOM05D003457 ORTHO05D009249 3.5e-22 110.2 245 38.4
Glyma.04G228600 Glycine max HOM05D003457 ORTHO05D009249 4.6e-22 109.8 265 35.1
AUR62006007 Chenopodium quinoa HOM05D003457 ORTHO05D009746 1.3e-21 108.2 284 34.5
Psat5g072040 Pisum sativum HOM05D003457 ORTHO05D009249 2.3e-21 107.5 248 33.5
Cc02_g00840 Coffea canephora HOM05D003457 ORTHO05D009249 3.0e-21 107.1 268 33.6
Lj1g0002342 Lotus japonicus HOM05D003457 ORTHO05D009249 5.1e-21 106.3 251 35.5
MSTRG.31 Avicennia marina HOM05D003457 ORTHO05D009249 8.6e-21 105.5 307 31.9
VMungo1309G3135 Vigna mungo HOM05D003457 ORTHO05D009249 8.6e-21 105.5 267 35.6
COL.COLO4_14368 Corchorus olitorius HOM05D003457 ORTHO05D009249 1.5e-20 104.8 289 32.2
Ca_16777_v3 Cicer arietinum L. HOM05D003457 ORTHO05D009249 2.5e-20 104.0 251 34.7
SGA_v2.0_scaffold141G35555 Striga asiatica HOM05D003457 ORTHO05D009249 3.3e-20 103.6 284 30.6
CiPaw.02G048700 Carya illinoinensis HOM05D003457 ORTHO05D009249 5.6e-20 102.8 175 40.6
Glyma.06G136400 Glycine max HOM05D003457 ORTHO05D009249 7.3e-20 102.4 267 34.8
Sabra05G0139600 Salix brachista HOM05D003457 ORTHO05D009249 1.6e-19 101.3 268 35.4
Phvul.009G045300 Phaseolus vulgaris HOM05D003457 ORTHO05D009249 4.7e-19 99.8 268 35.1
EL10Ac3g05182 Beta vulgaris HOM05D003457 ORTHO05D009249 1.4e-18 98.2 242 37.6
BcaB07g29912 Brassica carinata HOM05D003457 ORTHO05D009249 1.8e-18 97.8 324 29.9
TPR.G33664 Trifolium pratense HOM05D003457 ORTHO05D009249 1.8e-18 97.8 248 32.3
QL09p007211 Quercus lobata HOM05D003457 ORTHO05D009249 2.4e-18 97.4 309 29.8
Lsat_1_v5_gn_9_3980 Lactuca sativa HOM05D003457 ORTHO05D009249 4.0e-18 96.7 270 34.8
Ah.07g204690 Amaranthus hybridus HOM05D003457 ORTHO05D009249 5.2e-18 96.3 248 35.1
Lsat_1_v5_gn_7_20360 Lactuca sativa HOM05D003457 ORTHO05D009249 5.2e-18 96.3 282 34.4
Peaxi162Scf00300g00833 Petunia axillaris HOM05D003457 ORTHO05D009249 5.2e-18 96.3 290 32.4
Lsat_1_v5_gn_5_51360 Lactuca sativa HOM05D003457 ORTHO05D009249 6.9e-18 95.9 270 34.4
HanXRQChr08g0225921 Helianthus annuus HOM05D003457 ORTHO05D009249 8.9e-18 95.5 274 33.9
Lsat_1_v5_gn_1_120581 Lactuca sativa HOM05D003457 ORTHO05D009249 2.6e-17 94.0 270 34.1
Lsat_1_v5_gn_8_4361 Lactuca sativa HOM05D003457 ORTHO05D009249 3.4e-17 93.6 339 31.0
BraA02t08999Z Brassica rapa HOM05D003457 ORTHO05D009249 3.8e-16 90.1 226 33.2
A02p40300 Brassica napus HOM05D003457 ORTHO05D009249 1.1e-15 88.6 226 32.3
C02p60250 Brassica napus HOM05D003457 ORTHO05D009249 4.2e-15 86.7 229 31.9
DCAR_020371 Daucus carota HOM05D003457 ORTHO05D009249 5.4e-15 86.3 238 34.9
CDE02G1140 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 7.1e-15 85.9 284 32.0
ATR1155G002 Amborella trichopoda HOM05D003457 ORTHO05D009249 9.3e-15 85.5 229 32.3
Sc13g0010260 Simmondsia chinensis HOM05D003457 ORTHO05D009249 1.2e-14 85.1 321 29.9
BolC2t12082H Brassica oleracea HOM05D003457 ORTHO05D009249 1.6e-14 84.7 229 31.9
PSO782G2427 Papaver somniferum HOM05D003457 ORTHO05D009249 1.6e-14 84.7 252 29.8
BcaC03g17967 Brassica carinata HOM05D003457 ORTHO05D009249 7.8e-14 82.4 325 28.6
HPP92_015415 Vanilla planifolia HOM05D003457 ORTHO05D009249 1.0e-13 82.0 246 32.1
CDE01G0392 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 1.1e-12 78.6 291 31.3
Atru.chr12.2426 Acer truncatum HOM05D003457 ORTHO05D009249 1.6e-11 74.7 232 31.5
unitig_90.g27506 Utricularia gibba HOM05D003457 ORTHO05D009249 1.1e-10 72.0 156 38.5
Lalb_Chr08g0239631 Lupinus albus HOM05D003457 ORTHO05D009249 2.0e-09 67.8 251 29.1
SEGI_37736 Sequoiadendron giganteum HOM05D013917 ORTHO05D013169 3.5e-06 57.0 262 25.6
Lsat_1_v5_gn_7_39641 Lactuca sativa HOM05D003457 ORTHO05D009249 4.6e-06 56.6 231 29.4


User provided reference genes

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