Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 6.4e-186 654.1 358 100.0
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 9.6e-166 587.0 373 83.9
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 4.8e-165 584.7 373 83.1
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 1.2e-144 516.9 373 76.4
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 2.2e-117 426.4 375 63.5
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 1.1e-116 424.1 376 62.2
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 2.4e-116 422.9 380 61.6
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 9.1e-116 421.0 373 63.3
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 9.1e-116 421.0 376 63.6
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 7.7e-115 417.9 375 60.5
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 2.5e-113 412.9 379 62.8
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 3.2e-113 412.5 375 60.3
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 3.6e-112 409.1 381 60.4
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 1.0e-111 407.5 374 60.7
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 1.8e-111 406.8 374 61.0
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 4.0e-111 405.6 379 60.7
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 8.8e-111 404.4 364 61.8
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 1.5e-110 403.7 375 60.8
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 2.0e-110 403.3 366 61.5
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 2.0e-110 403.3 375 59.2
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 3.3e-110 402.5 370 61.4
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 4.4e-110 402.1 378 59.5
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 1.7e-109 400.2 412 56.6
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 4.8e-109 398.7 372 59.4
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 1.1e-108 397.5 370 60.3
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.1e-108 397.5 372 59.1
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 1.4e-108 397.1 374 58.3
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 1.8e-108 396.7 370 60.3
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.8e-108 396.7 372 58.9
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 2.4e-108 396.4 376 59.6
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 5.3e-108 395.2 374 58.6
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.2e-107 394.0 375 59.2
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 1.6e-107 393.7 368 59.2
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 2.7e-107 392.9 374 60.4
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 4.5e-107 392.1 374 59.4
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 1.0e-106 391.0 361 61.5
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 1.3e-106 390.6 374 57.2
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 6.5e-106 388.3 364 58.5
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 8.5e-106 387.9 376 58.5
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 1.1e-105 387.5 375 60.0
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 1.1e-105 387.5 366 57.7
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 1.5e-105 387.1 371 57.7
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 3.2e-105 386.0 371 56.6
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 9.4e-105 384.4 396 55.6
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 1.2e-104 384.0 366 57.4
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 1.6e-104 383.6 369 59.1
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 2.7e-104 382.9 369 57.5
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 1.0e-103 380.9 378 58.2
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 1.4e-103 380.6 364 56.9
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 1.4e-103 380.6 371 58.0
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 2.3e-103 379.8 378 59.3
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 1.3e-101 374.0 415 52.5
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 1.7e-101 373.6 373 57.6
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 2.8e-101 372.9 368 57.1
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 3.7e-101 372.5 411 53.0
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 8.3e-101 371.3 373 56.0
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 1.4e-100 370.5 356 57.6
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 1.8e-100 370.2 377 57.0
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 1.8e-100 370.2 377 55.2
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 1.8e-100 370.2 375 56.0
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 1.2e-99 367.5 371 56.1
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 2.7e-99 366.3 409 53.8
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 7.7e-99 364.8 369 55.3
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 1.0e-98 364.4 369 55.0
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 2.9e-98 362.8 382 53.7
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 3.8e-98 362.5 371 56.1
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 5.0e-98 362.1 361 56.8
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 8.6e-98 361.3 371 55.0
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 1.0e-95 354.4 380 52.9
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 5.2e-95 352.1 370 54.9
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 1.5e-94 350.5 373 53.4
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 1.3e-93 347.4 389 53.2
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 4.9e-93 345.5 374 52.9
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 1.4e-92 344.0 378 53.4
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 3.1e-92 342.8 372 51.9
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 3.5e-91 339.3 377 54.1
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 1.0e-90 337.8 391 50.6
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 6.6e-90 335.1 384 50.5
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 6.6e-90 335.1 351 53.3
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 2.5e-89 333.2 372 53.8
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 1.6e-88 330.5 398 50.8
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 1.6e-88 330.5 395 50.6
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 3.6e-88 329.3 393 49.9
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 1.4e-87 327.4 397 50.4
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 6.8e-87 325.1 355 53.5
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 1.2e-86 324.3 400 49.0
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 1.2e-86 324.3 391 50.4
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 1.5e-86 323.9 400 48.8
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 1.5e-86 323.9 404 48.5
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 2.0e-86 323.6 410 48.8
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 3.4e-86 322.8 400 49.8
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 4.4e-86 322.4 411 47.4
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 9.8e-86 321.2 403 48.4
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 1.7e-85 320.5 393 49.4
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 2.9e-85 319.7 389 48.1
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 2.9e-85 319.7 401 48.1
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 3.7e-85 319.3 405 49.4
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 1.1e-84 317.8 410 48.8
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 5.4e-84 315.5 409 48.2
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 1.6e-83 313.9 387 49.1
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 7.8e-83 311.6 407 48.9
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 3.9e-82 309.3 410 49.3
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 5.0e-82 308.9 407 49.4
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 8.6e-82 308.1 364 50.0
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 1.9e-81 307.0 414 47.6
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 4.3e-81 305.8 360 52.8
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 5.6e-81 305.4 356 51.7
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 1.2e-80 304.3 413 47.5
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 4.4e-78 295.8 312 53.2
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 1.3e-74 284.3 430 41.6
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 7.5e-70 268.5 322 49.4
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 4.7e-64 249.2 284 53.2
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 9.3e-52 208.4 405 36.5
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 6.0e-51 205.7 359 38.4
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 8.7e-50 201.8 187 57.2
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 8.7e-50 201.8 187 57.2
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 8.7e-50 201.8 187 57.2
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 1.8e-47 194.1 479 31.9
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 1.6e-40 171.0 285 41.4
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 3.7e-40 169.9 530 29.4
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 1.8e-39 167.5 366 39.6
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 5.3e-39 166.0 283 39.6
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 9.0e-39 165.2 128 68.8
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 4.9e-37 159.5 388 33.2
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 8.7e-34 148.7 97 77.3
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 3.1e-31 140.2 171 48.0
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 5.3e-31 139.4 210 45.7
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 1.0e-29 135.2 129 57.4
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 4.8e-24 116.3 311 31.2
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 1.2e-22 111.7 194 37.6
ClCG01G002340 Citrullus lanatus HOM05D005438 ORTHO05D006744 2.9e-21 107.1 117 56.4
ECA246G3112 Erigeron canadensis HOM05D005438 ORTHO05D006744 8.2e-16 89.0 81 58.0
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 5.5e-12 76.3 379 24.3
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 5.5e-12 76.3 379 24.3
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 7.2e-12 75.9 42 81.0
Cre01.g054000 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 2.4e-07 60.8 68 44.1
AagrBONN_evm.TU.Sc2ySwM_344.4702 Anthoceros agrestis HOM05D005438 ORTHO05D006744 2.0e-06 57.8 132 32.6


User provided reference genes

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