Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G002070 Citrullus lanatus HOM05D001384 ORTHO05D001215 6.0e-27 123.6 71 100.0
CsaV3_5G002200 Cucumis sativus L. HOM05D001384 ORTHO05D001215 7.8e-19 96.7 75 78.7
MELO3C034006.2 Cucumis melo HOM05D001384 ORTHO05D001215 7.3e-17 90.1 75 74.7
Sed0021496 Sechium edule HOM05D001384 ORTHO05D001215 5.2e-15 84.0 73 76.7
DCAR_006964 Daucus carota HOM05D001384 ORTHO05D001215 3.0e-10 68.2 65 58.5
QL02p031550 Quercus lobata HOM05D001384 ORTHO05D001215 5.1e-10 67.4 67 64.2
Psat7g027760 Pisum sativum HOM05D001384 ORTHO05D001215 6.6e-10 67.0 62 64.5
Ca_17497_v3 Cicer arietinum L. HOM05D001384 ORTHO05D001215 1.9e-09 65.5 58 63.8
MELO3C032818.2 Cucumis melo HOM05D001384 ORTHO05D001215 1.9e-09 65.5 63 68.3
Phvul.002G162600 Phaseolus vulgaris HOM05D001384 ORTHO05D001215 7.3e-09 63.5 72 55.6
Actinidia27339 Actinidia chinensis HOM05D001384 ORTHO05D001215 1.2e-08 62.8 71 57.7
Manes.02G013300 Manihot esculenta HOM05D001384 ORTHO05D001215 1.2e-08 62.8 63 61.9
C04p31180 Brassica napus HOM05D001384 ORTHO05D001215 1.6e-08 62.4 55 67.3
BolC4t24669H Brassica oleracea HOM05D001384 ORTHO05D001215 1.6e-08 62.4 55 67.3
Gorai.010G080100 Gossypium raimondii HOM05D001384 ORTHO05D001215 1.6e-08 62.4 56 69.6
Hma1.2p1_0384F.1_g141070 Hydrangea macrophylla HOM05D001384 ORTHO05D001215 1.6e-08 62.4 60 61.7
PGR042G2194 Punica granatum HOM05D001384 ORTHO05D001215 1.6e-08 62.4 56 64.3
Sed0009789 Sechium edule HOM05D001384 ORTHO05D001215 1.6e-08 62.4 57 68.4
CsaV3_4G006390 Cucumis sativus L. HOM05D001384 ORTHO05D001215 2.1e-08 62.0 58 67.2
Gohir.A12G234600 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.1e-08 62.0 61 65.6
Gorai.008G252400 Gossypium raimondii HOM05D001384 ORTHO05D001215 2.1e-08 62.0 61 65.6
BcaC02g10241 Brassica carinata HOM05D001384 ORTHO05D001215 2.8e-08 61.6 53 67.9
CiPaw.11G124600 Carya illinoinensis HOM05D001384 ORTHO05D001215 2.8e-08 61.6 59 62.7
ClCG07G014860 Citrullus lanatus HOM05D001384 ORTHO05D001215 2.8e-08 61.6 59 67.8
Gohir.D06G068500 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.8e-08 61.6 59 66.1
CiPaw.01G072100 Carya illinoinensis HOM05D001384 ORTHO05D001215 3.6e-08 61.2 57 68.4
Duzib133G0751 Durio zibethinus HOM05D001384 ORTHO05D001215 3.6e-08 61.2 56 67.9
MBI06_g32761_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 3.6e-08 61.2 62 56.5
TWI81G0992 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 3.6e-08 61.2 65 61.5
AL4G45630 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 4.7e-08 60.8 49 71.4
AT2G46330 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 4.7e-08 60.8 49 71.4
Carub.0005s2833 Capsella rubella HOM05D001384 ORTHO05D001215 4.7e-08 60.8 68 61.8
Haze_08680 Corylus avellana HOM05D001384 ORTHO05D001215 4.7e-08 60.8 64 64.1
Gohir.A06G069900 Gossypium hirsutum HOM05D001384 ORTHO05D001215 4.7e-08 60.8 56 67.9
Gohir.D11G099700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 4.7e-08 60.8 71 59.2
Gorai.007G105900 Gossypium raimondii HOM05D001384 ORTHO05D001215 4.7e-08 60.8 71 59.2
Gohir.D12G235700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 6.2e-08 60.5 61 63.9
Lsat_1_v5_gn_6_11901 Lactuca sativa HOM05D001384 ORTHO05D001215 6.2e-08 60.5 58 58.6
Thecc.03G292300 Theobroma cacao HOM05D001384 ORTHO05D001215 6.2e-08 60.5 74 56.8
GSVIVG01028741001 Vitis vinifera HOM05D001384 ORTHO05D001215 6.2e-08 60.5 67 61.2
Aa31LG1G27700 Aethionema arabicum HOM05D001384 ORTHO05D001215 8.1e-08 60.1 63 57.1
Dinv43894 Davidia involucrata HOM05D001384 ORTHO05D001215 8.1e-08 60.1 67 58.2
TAR375G0324 Trochodendron aralioides HOM05D001384 ORTHO05D001215 8.1e-08 60.1 69 60.9
Actinidia28493 Actinidia chinensis HOM05D001384 ORTHO05D001215 1.1e-07 59.7 67 58.2
BcaB01g03227 Brassica carinata HOM05D001384 ORTHO05D001215 1.1e-07 59.7 45 75.6
Cpa.g.sc194.9 Carica papaya HOM05D001384 ORTHO05D001215 1.1e-07 59.7 60 61.7
Glyma.11G018900 Glycine max HOM05D001384 ORTHO05D001215 1.1e-07 59.7 55 63.6
arahy.Tifrunner.gnm1.ann1.1BHK1H Arachis hypogaea HOM05D001384 ORTHO05D001215 1.4e-07 59.3 56 66.1
BcaC04g23523 Brassica carinata HOM05D001384 ORTHO05D001215 1.4e-07 59.3 57 64.9
A09p06620 Brassica napus HOM05D001384 ORTHO05D001215 1.4e-07 59.3 57 64.9
C09p07390 Brassica napus HOM05D001384 ORTHO05D001215 1.4e-07 59.3 57 64.9
BolC9t53653H Brassica oleracea HOM05D001384 ORTHO05D001215 1.4e-07 59.3 57 64.9
BraA04t15816Z Brassica rapa HOM05D001384 ORTHO05D001215 1.4e-07 59.3 45 75.6
BraA09t36309Z Brassica rapa HOM05D001384 ORTHO05D001215 1.4e-07 59.3 57 64.9
Carub.0004s2903 Capsella rubella HOM05D001384 ORTHO05D001215 1.4e-07 59.3 49 69.4
Thhalv10001752m.g Eutrema salsugineum HOM05D001384 ORTHO05D001215 1.4e-07 59.3 53 67.9
Medtr8g099245 Medicago truncatula HOM05D001384 ORTHO05D001215 1.4e-07 59.3 67 55.2
Peaxi162Scf00099g01816 Petunia axillaris HOM05D001384 ORTHO05D001215 1.4e-07 59.3 58 62.1
Phvul.002G296000 Phaseolus vulgaris HOM05D001384 ORTHO05D001215 1.4e-07 59.3 71 59.2
BcaC01g05082 Brassica carinata HOM05D001384 ORTHO05D001215 1.8e-07 58.9 67 56.7
Dinv37556 Davidia involucrata HOM05D001384 ORTHO05D001215 1.8e-07 58.9 61 62.3
Gohir.A10G199650 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.8e-07 58.9 71 57.7
HanXRQChr13g0415891 Helianthus annuus HOM05D001384 ORTHO05D001215 1.8e-07 58.9 62 61.3
Sp4g28370 Schrenkiella parvula HOM05D001384 ORTHO05D001215 1.8e-07 58.9 53 67.9
BcaC02g12816 Brassica carinata HOM05D001384 ORTHO05D001215 2.4e-07 58.5 50 68.0
A05p01460 Brassica napus HOM05D001384 ORTHO05D001215 2.4e-07 58.5 50 68.0
C04p01650 Brassica napus HOM05D001384 ORTHO05D001215 2.4e-07 58.5 50 68.0
BolC4t21817H Brassica oleracea HOM05D001384 ORTHO05D001215 2.4e-07 58.5 50 68.0
BraA05t19143Z Brassica rapa HOM05D001384 ORTHO05D001215 2.4e-07 58.5 50 68.0
Glyma.05G214851 Glycine max HOM05D001384 ORTHO05D001215 2.4e-07 58.5 58 67.2
MBI07_g20448_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 2.4e-07 58.5 69 55.1
Nitab4.5_0000305g0110 Nicotiana tabacum HOM05D001384 ORTHO05D001215 2.4e-07 58.5 65 60.0
vmacro13148 Vaccinium macrocarpon HOM05D001384 ORTHO05D001215 2.4e-07 58.5 56 66.1
Atru.chr5.621 Acer truncatum HOM05D001384 ORTHO05D001215 3.1e-07 58.2 74 56.8
Aa31LG10G15620 Aethionema arabicum HOM05D001384 ORTHO05D001215 3.1e-07 58.2 56 64.3
AT5G24105 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 3.1e-07 58.2 51 68.6
BcaB01g03224 Brassica carinata HOM05D001384 ORTHO05D001215 3.1e-07 58.2 56 64.3
BcaC02g12698 Brassica carinata HOM05D001384 ORTHO05D001215 3.1e-07 58.2 56 64.3
Cfa012851 Carpinus fangiana HOM05D001384 ORTHO05D001215 3.1e-07 58.2 42 78.6
Duzib068G0580 Durio zibethinus HOM05D001384 ORTHO05D001215 3.1e-07 58.2 69 58.0
Gohir.A10G068700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 3.1e-07 58.2 71 56.3
PGSC0003DMG400000207 Solanum tuberosum HOM05D001384 ORTHO05D001215 3.1e-07 58.2 61 60.7
AL5G44040 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 4.0e-07 57.8 68 58.8
BcaC01g05077 Brassica carinata HOM05D001384 ORTHO05D001215 4.0e-07 57.8 68 58.8
C03p30500 Brassica napus HOM05D001384 ORTHO05D001215 4.0e-07 57.8 68 58.8
CARHR141610 Cardamine hirsuta HOM05D001384 ORTHO05D001215 4.0e-07 57.8 57 63.2
Glyma.08G021100 Glycine max HOM05D001384 ORTHO05D001215 4.0e-07 57.8 54 66.7
Phvul.001G079000 Phaseolus vulgaris HOM05D001384 ORTHO05D001215 4.0e-07 57.8 56 57.1
PGR031G3192 Punica granatum HOM05D001384 ORTHO05D001215 4.0e-07 57.8 59 62.7
Carub.0006s2183 Capsella rubella HOM05D001384 ORTHO05D001215 5.2e-07 57.4 57 63.2
COL.COLO4_06332 Corchorus olitorius HOM05D001384 ORTHO05D001215 5.2e-07 57.4 71 59.2
Duzib084G1120 Durio zibethinus HOM05D001384 ORTHO05D001215 5.2e-07 57.4 74 55.4
Nitab4.5_0008261g0010 Nicotiana tabacum HOM05D001384 ORTHO05D001215 5.2e-07 57.4 58 60.3
Solyc01g095515.1 Solanum lycopersicum HOM05D001384 ORTHO05D001215 5.2e-07 57.4 61 59.0
Solyc10g011730.3 Solanum lycopersicum HOM05D001384 ORTHO05D001215 5.2e-07 57.4 67 53.7
Sopen01g039270 Solanum pennellii HOM05D001384 ORTHO05D001215 5.2e-07 57.4 61 59.0
BcaB02g08150 Brassica carinata HOM05D001384 ORTHO05D001215 6.8e-07 57.0 61 59.0
Duzib138G1328 Durio zibethinus HOM05D001384 ORTHO05D001215 6.8e-07 57.0 60 61.7
Potri.001G094700 Populus trichocarpa HOM05D001384 ORTHO05D001215 6.8e-07 57.0 31 90.3
RcHm_v2.0_Chr1g0380071 Rosa chinensis HOM05D001384 ORTHO05D001215 6.8e-07 57.0 54 64.8
Sopen10g005520 Solanum pennellii HOM05D001384 ORTHO05D001215 6.8e-07 57.0 67 55.2
PGSC0003DMG400019380 Solanum tuberosum HOM05D001384 ORTHO05D001215 6.8e-07 57.0 64 57.8
BcaNung01209 Brassica carinata HOM05D001384 ORTHO05D001215 8.9e-07 56.6 40 80.0
COL.COLO4_21727 Corchorus olitorius HOM05D001384 ORTHO05D001215 8.9e-07 56.6 57 61.4
FAN06G1205 Fragaria x ananassa HOM05D001384 ORTHO05D001215 8.9e-07 56.6 56 60.7
Gohir.D11G023500 Gossypium hirsutum HOM05D001384 ORTHO05D001215 8.9e-07 56.6 65 56.9
Nitab4.5_0009232g0020 Nicotiana tabacum HOM05D001384 ORTHO05D001215 8.9e-07 56.6 65 58.5
AT3G61640 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 1.2e-06 56.2 67 58.2
BcaB01g03229 Brassica carinata HOM05D001384 ORTHO05D001215 1.2e-06 56.2 68 57.4
A03p25570 Brassica napus HOM05D001384 ORTHO05D001215 1.2e-06 56.2 68 57.4
BraA03t11773Z Brassica rapa HOM05D001384 ORTHO05D001215 1.2e-06 56.2 68 57.4
Duzib205G1079 Durio zibethinus HOM05D001384 ORTHO05D001215 1.2e-06 56.2 74 54.1
FAN06G2829 Fragaria x ananassa HOM05D001384 ORTHO05D001215 1.2e-06 56.2 61 60.7
Manes.06G156900 Manihot esculenta HOM05D001384 ORTHO05D001215 1.2e-06 56.2 59 59.3
Manes.14G018800 Manihot esculenta HOM05D001384 ORTHO05D001215 1.2e-06 56.2 60 58.3
Nitab4.5_0000522g0080 Nicotiana tabacum HOM05D001384 ORTHO05D001215 1.2e-06 56.2 67 55.2
Thecc.01G347500 Theobroma cacao HOM05D001384 ORTHO05D001215 1.2e-06 56.2 71 59.2
CAN.G986.43 Capsicum annuum HOM05D001384 ORTHO05D001215 1.5e-06 55.8 57 63.2
Gohir.A12G110700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.5e-06 55.8 56 62.5
Gohir.D07G144700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.5e-06 55.8 50 64.0
Gohir.D12G114000 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.5e-06 55.8 56 62.5
Rhsim07G0006800 Rhododendron simsii HOM05D001384 ORTHO05D001215 1.5e-06 55.8 65 56.9
vmacro22519 Vaccinium macrocarpon HOM05D001384 ORTHO05D001215 1.5e-06 55.8 59 59.3
arahy.Tifrunner.gnm1.ann1.Y9NP63 Arachis hypogaea HOM05D001384 ORTHO05D001215 2.0e-06 55.5 68 55.9
CiPaw.03G220500 Carya illinoinensis HOM05D001384 ORTHO05D001215 2.0e-06 55.5 65 56.9
CDE02G0411 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 2.0e-06 55.5 53 66.0
Gohir.D08G132700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.0e-06 55.5 76 48.7
Gorai.004G135600 Gossypium raimondii HOM05D001384 ORTHO05D001215 2.0e-06 55.5 76 48.7
HanXRQChr04g0121001 Helianthus annuus HOM05D001384 ORTHO05D001215 2.0e-06 55.5 59 57.6
MBI04_g08938_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 2.0e-06 55.5 51 58.8
Oeu030571.1 Olea europaea HOM05D001384 ORTHO05D001215 2.0e-06 55.5 54 63.0
unitig_736.g22817 Utricularia gibba HOM05D001384 ORTHO05D001215 2.0e-06 55.5 66 48.5
GSVIVG01019489001 Vitis vinifera HOM05D001384 ORTHO05D001215 2.0e-06 55.5 62 59.7
COL.COLO4_18260 Corchorus olitorius HOM05D001384 ORTHO05D001215 2.6e-06 55.1 54 61.1
CsaV3_3G008420 Cucumis sativus L. HOM05D001384 ORTHO05D001215 2.6e-06 55.1 63 57.1
Gohir.A07G139600 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.6e-06 55.1 50 64.0
Gohir.A11G210500 Gossypium hirsutum HOM05D001384 ORTHO05D001215 2.6e-06 55.1 71 56.3
Lj1g0015216 Lotus japonicus HOM05D001384 ORTHO05D001215 2.6e-06 55.1 65 56.9
Lj4g0006841 Lotus japonicus HOM05D001384 ORTHO05D001215 2.6e-06 55.1 60 51.7
Peaxi162Scf01012g00121 Petunia axillaris HOM05D001384 ORTHO05D001215 2.6e-06 55.1 65 56.9
AL8G27900 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 3.4e-06 54.7 64 54.7
arahy.Tifrunner.gnm1.ann1.3Z4R3A Arachis hypogaea HOM05D001384 ORTHO05D001215 3.4e-06 54.7 60 65.0
arahy.Tifrunner.gnm1.ann1.57RBBI Arachis hypogaea HOM05D001384 ORTHO05D001215 3.4e-06 54.7 55 63.6
arahy.Tifrunner.gnm1.ann1.T3QZI5 Arachis hypogaea HOM05D001384 ORTHO05D001215 3.4e-06 54.7 62 56.5
arahy.Tifrunner.gnm1.ann1.TI6HCL Arachis hypogaea HOM05D001384 ORTHO05D001215 3.4e-06 54.7 60 65.0
A04p00990 Brassica napus HOM05D001384 ORTHO05D001215 3.4e-06 54.7 58 58.6
Carub.0008s1343 Capsella rubella HOM05D001384 ORTHO05D001215 3.4e-06 54.7 64 54.7
CDE02G4026 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 3.4e-06 54.7 67 50.7
ClCG05G008690 Citrullus lanatus HOM05D001384 ORTHO05D001215 3.4e-06 54.7 52 63.5
FAN23G2194 Fragaria x ananassa HOM05D001384 ORTHO05D001215 3.4e-06 54.7 51 60.8
Glyma.04G238500 Glycine max HOM05D001384 ORTHO05D001215 3.4e-06 54.7 58 56.9
Potri.003G136600 Populus trichocarpa HOM05D001384 ORTHO05D001215 3.4e-06 54.7 31 83.9
Sed0020989 Sechium edule HOM05D001384 ORTHO05D001215 3.4e-06 54.7 59 66.1
Thecc.09G095500 Theobroma cacao HOM05D001384 ORTHO05D001215 3.4e-06 54.7 62 56.5
arahy.Tifrunner.gnm1.ann1.246EX0 Arachis hypogaea HOM05D001384 ORTHO05D001215 4.4e-06 54.3 56 62.5
BcaC01g06232 Brassica carinata HOM05D001384 ORTHO05D001215 4.4e-06 54.3 64 54.7
BcaC01g06233 Brassica carinata HOM05D001384 ORTHO05D001215 4.4e-06 54.3 64 54.7
A06p34940 Brassica napus HOM05D001384 ORTHO05D001215 4.4e-06 54.3 40 77.5
C07p43610 Brassica napus HOM05D001384 ORTHO05D001215 4.4e-06 54.3 40 77.5
BolC3t14192H Brassica oleracea HOM05D001384 ORTHO05D001215 4.4e-06 54.3 64 54.7
BolC7t44888H Brassica oleracea HOM05D001384 ORTHO05D001215 4.4e-06 54.3 40 77.5
Ciclev10010340m.g Citrus clementina HOM05D001384 ORTHO05D001215 4.4e-06 54.3 58 50.0
Psat6g039320 Pisum sativum HOM05D001384 ORTHO05D001215 4.4e-06 54.3 58 58.6
BcaC03g14439 Brassica carinata HOM05D001384 ORTHO05D001215 5.8e-06 53.9 64 53.1
C02p18530 Brassica napus HOM05D001384 ORTHO05D001215 5.8e-06 53.9 64 53.1
BolC2t07993H Brassica oleracea HOM05D001384 ORTHO05D001215 5.8e-06 53.9 64 53.1
Haze_25702 Corylus avellana HOM05D001384 ORTHO05D001215 5.8e-06 53.9 57 49.1
MELO3C026936.2 Cucumis melo HOM05D001384 ORTHO05D001215 5.8e-06 53.9 57 61.4
Thhalv10015233m.g Eutrema salsugineum HOM05D001384 ORTHO05D001215 5.8e-06 53.9 64 54.7
Gorai.008G123500 Gossypium raimondii HOM05D001384 ORTHO05D001215 5.8e-06 53.9 56 62.5
Prupe.2G306800 Prunus persica HOM05D001384 ORTHO05D001215 5.8e-06 53.9 65 58.5
THA.LOC104802055 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 5.8e-06 53.9 57 61.4
Lj1g0008485 Lotus japonicus HOM05D001384 ORTHO05D001215 7.6e-06 53.5 58 53.4
Lalb_Chr11g0066541 Lupinus albus HOM05D001384 ORTHO05D001215 7.6e-06 53.5 56 60.7
Sed0001168 Sechium edule HOM05D001384 ORTHO05D001215 7.6e-06 53.5 59 61.0
AagrBONN_evm.TU.Sc2ySwM_117.409 Anthoceros agrestis HOM05D001384 ORTHO05D001215 9.9e-06 53.1 55 60.0
arahy.Tifrunner.gnm1.ann1.29029X Arachis hypogaea HOM05D001384 ORTHO05D001215 9.9e-06 53.1 53 54.7
arahy.Tifrunner.gnm1.ann1.B0IVK2 Arachis hypogaea HOM05D001384 ORTHO05D001215 9.9e-06 53.1 53 54.7
CDE08G0321 Ceratophyllum demersum HOM05D001384 ORTHO05D001215 9.9e-06 53.1 69 52.2
Haze_15620 Corylus avellana HOM05D001384 ORTHO05D001215 9.9e-06 53.1 68 57.4
Migut.F00245 Erythranthe guttata HOM05D001384 ORTHO05D001215 9.9e-06 53.1 55 61.8
Nitab4.5_0000223g0120 Nicotiana tabacum HOM05D001384 ORTHO05D001215 9.9e-06 53.1 77 50.6
Phvul.004G173101 Phaseolus vulgaris HOM05D001384 ORTHO05D001215 9.9e-06 53.1 50 60.0
TAR626G0551 Trochodendron aralioides HOM05D001384 ORTHO05D001215 9.9e-06 53.1 50 70.0


User provided reference genes

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