Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G001980 Citrullus lanatus HOM05D006501 ORTHO05D008241 1.8e-102 375.9 190 100.0
CsaV3_5G002110 Cucumis sativus L. HOM05D006501 ORTHO05D008241 4.4e-93 344.7 191 93.2
MELO3C005743.2 Cucumis melo HOM05D006501 ORTHO05D008241 2.4e-83 312.4 175 92.6
Sed0001613 Sechium edule HOM05D006501 ORTHO05D008241 2.6e-77 292.4 185 82.2
Sed0024637 Sechium edule HOM05D006501 ORTHO05D008241 5.8e-69 264.6 186 75.8
CSS0007891 Camellia sinensis var. sinensis HOM05D006501 ORTHO05D008241 8.4e-60 234.2 174 71.8
Thecc.03G294700 Theobroma cacao HOM05D006501 ORTHO05D008241 1.9e-59 233.0 181 66.9
Dinv37544 Davidia involucrata HOM05D006501 ORTHO05D008241 2.7e-58 229.2 186 66.7
GSVIVG01019510001 Vitis vinifera HOM05D006501 ORTHO05D003403 3.5e-58 228.8 179 70.4
Rhsim07G0083200 Rhododendron simsii HOM05D006501 ORTHO05D008241 4.6e-58 228.4 171 68.4
Actinidia27329 Actinidia chinensis HOM05D006501 ORTHO05D008241 6.0e-58 228.0 173 69.9
Sopen08g004120 Solanum pennellii HOM05D006501 ORTHO05D008241 1.7e-57 226.5 174 69.5
Potri.003G138500 Populus trichocarpa HOM05D006501 ORTHO05D008241 3.0e-57 225.7 177 66.7
CAN.G792.46 Capsicum annuum HOM05D006501 ORTHO05D008241 6.6e-57 224.6 174 69.0
PGSC0003DMG400005788 Solanum tuberosum HOM05D006501 ORTHO05D008241 1.1e-56 223.8 174 68.4
Solyc08g008270.4 Solanum lycopersicum HOM05D006501 ORTHO05D008241 1.9e-56 223.0 174 68.4
RcHm_v2.0_Chr7g0195201 Rosa chinensis HOM05D006501 ORTHO05D008241 3.3e-56 222.2 194 63.9
Prupe.5G116900 Prunus persica HOM05D006501 ORTHO05D008241 4.3e-56 221.9 180 66.1
Peaxi162Scf00102g01748 Petunia axillaris HOM05D006501 ORTHO05D008241 5.6e-56 221.5 173 67.1
Phvul.002G297000 Phaseolus vulgaris HOM05D006501 ORTHO05D008241 7.3e-56 221.1 167 71.3
vmacro13905 Vaccinium macrocarpon HOM05D006501 ORTHO05D008241 7.3e-56 221.1 158 70.3
Nitab4.5_0006656g0030 Nicotiana tabacum HOM05D006501 ORTHO05D008241 1.6e-55 219.9 179 65.9
Sabra03G0099700 Salix brachista HOM05D006501 ORTHO05D003403 1.6e-55 219.9 160 70.0
Gohir.A08G100000 Gossypium hirsutum HOM05D006501 ORTHO05D008241 2.1e-55 219.5 136 80.9
VMungo0251G3563 Vigna mungo HOM05D006501 ORTHO05D008241 2.1e-55 219.5 159 74.8
CANSAT21G0520 Cannabis sativa HOM05D006501 ORTHO05D008241 2.8e-55 219.2 175 66.9
Gorai.004G134700 Gossypium raimondii HOM05D006501 ORTHO05D008241 8.1e-55 217.6 136 80.1
Actinidia22724 Actinidia chinensis HOM05D006501 ORTHO05D008241 1.1e-54 217.2 138 76.8
TWI60G0228 Tripterygium wilfordii HOM05D006501 ORTHO05D008241 1.1e-54 217.2 169 68.6
COL.COLO4_10671 Corchorus olitorius HOM05D006501 ORTHO05D008241 1.4e-54 216.9 170 68.8
Oeu009949.1 Olea europaea HOM05D006501 ORTHO05D008241 1.4e-54 216.9 187 64.2
Glyma.05G215800 Glycine max HOM05D006501 ORTHO05D008241 2.4e-54 216.1 121 90.1
Gohir.D08G131800 Gossypium hirsutum HOM05D006501 ORTHO05D008241 2.4e-54 216.1 136 79.4
Cfa022928 Carpinus fangiana HOM05D006501 ORTHO05D008241 3.1e-54 215.7 156 73.1
unitig_46.g18618 Utricularia gibba HOM05D006501 ORTHO05D008241 4.0e-54 215.3 145 76.6
Manes.02G011600 Manihot esculenta HOM05D006501 ORTHO05D008241 9.0e-54 214.2 176 67.0
MD06G1104000 Malus domestica HOM05D006501 ORTHO05D008241 1.2e-53 213.8 194 61.3
Medtr8g099345 Medicago truncatula HOM05D006501 ORTHO05D008241 1.5e-53 213.4 137 77.4
Lalb_Chr05g0224191 Lupinus albus HOM05D006501 ORTHO05D008241 3.4e-53 212.2 132 81.1
Sp2g00400 Schrenkiella parvula HOM05D006501 ORTHO05D008241 3.4e-53 212.2 186 63.4
Atru.chr4.2141 Acer truncatum HOM05D006501 ORTHO05D008241 4.4e-53 211.8 177 65.0
MD14G1122900 Malus domestica HOM05D006501 ORTHO05D008241 5.8e-53 211.5 187 63.1
Duzib205G0456 Durio zibethinus HOM05D006501 ORTHO05D008241 1.3e-52 210.3 172 65.7
Cc08_g15900 Coffea canephora HOM05D006501 ORTHO05D008241 1.7e-52 209.9 170 65.3
DCAR_005033 Daucus carota HOM05D006501 ORTHO05D008241 1.7e-52 209.9 159 71.7
Duzib068G1433 Durio zibethinus HOM05D006501 ORTHO05D008241 2.2e-52 209.5 177 62.7
Ca_17489_v3 Cicer arietinum L. HOM05D006501 ORTHO05D008241 3.8e-52 208.8 141 75.2
THA.LOC104809338 Tarenaya hassleriana HOM05D006501 ORTHO05D008241 3.8e-52 208.8 134 79.1
Hund11400 Selenicereus undatus HOM05D006501 ORTHO05D008241 4.9e-52 208.4 183 62.3
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 4.9e-52 208.4 125 82.4
MSTRG.25662 Avicennia marina HOM05D006501 ORTHO05D008241 6.4e-52 208.0 134 78.4
Hma1.2p1_0952F.1_g241030 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 6.4e-52 208.0 114 89.5
Aqoxy7G00141 Aquilegia oxysepala HOM05D006501 ORTHO05D008241 8.4e-52 207.6 177 65.5
AT1G64355 Arabidopsis thaliana HOM05D006501 ORTHO05D008241 8.4e-52 207.6 169 66.9
BraA09t37076Z Brassica rapa HOM05D006501 ORTHO05D008241 8.4e-52 207.6 187 62.6
COL.COLO4_10669 Corchorus olitorius HOM05D006501 ORTHO05D008241 8.4e-52 207.6 178 64.0
Migut.A00672 Erythranthe guttata HOM05D006501 ORTHO05D008241 8.4e-52 207.6 144 75.7
AL2G10510 Arabidopsis lyrata HOM05D006501 ORTHO05D008241 2.4e-51 206.1 169 66.9
BolC9t54619H Brassica oleracea HOM05D006501 ORTHO05D008241 3.2e-51 205.7 169 66.3
Lj4g0012209 Lotus japonicus HOM05D006501 ORTHO05D008241 4.2e-51 205.3 172 68.0
Nn3g19061 Nelumbo nucifera HOM05D006501 ORTHO05D008241 5.4e-51 204.9 133 76.7
Psat7g027120 Pisum sativum HOM05D006501 ORTHO05D008241 5.4e-51 204.9 136 76.5
PGR042G3674 Punica granatum HOM05D006501 ORTHO05D008241 7.1e-51 204.5 167 65.9
Nitab4.5_0002944g0130 Nicotiana tabacum HOM05D006501 ORTHO05D008241 7.9e-50 201.1 179 61.5
Ciclev10022489m.g Citrus clementina HOM05D006501 ORTHO05D008241 1.3e-49 200.3 121 81.8
FAN04G2094 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.3e-49 200.3 173 64.2
FAN18G4356 Fragaria x ananassa HOM05D006501 ORTHO05D008241 1.7e-49 199.9 173 64.2
FAN08G0187 Fragaria x ananassa HOM05D006501 ORTHO05D008241 2.3e-49 199.5 172 64.5
Sc01g0010190 Simmondsia chinensis HOM05D006501 ORTHO05D008241 3.9e-49 198.7 172 62.8
Eucgr.E00849 Eucalyptus grandis HOM05D006501 ORTHO05D008241 5.1e-49 198.4 121 81.8
FAN13G2672 Fragaria x ananassa HOM05D006501 ORTHO05D008241 5.1e-49 198.4 173 63.6
SalBow1G7260 Salvia bowleyana HOM05D006501 ORTHO05D008241 5.1e-49 198.4 170 62.9
SalBow1G8172 Salvia bowleyana HOM05D006501 ORTHO05D008241 5.1e-49 198.4 170 62.9
HPP92_004586 Vanilla planifolia HOM05D006501 ORTHO05D000003 6.6e-49 198.0 201 56.7
FAN18G2585 Fragaria x ananassa HOM05D006501 ORTHO05D008241 8.7e-49 197.6 173 63.6
PSO384G3305 Papaver somniferum HOM05D006501 ORTHO05D008241 1.1e-48 197.2 154 68.8
CiPaw.11G123100 Carya illinoinensis HOM05D006501 ORTHO05D008241 1.9e-48 196.4 164 64.6
HanXRQChr09g0256331 Helianthus annuus HOM05D006501 ORTHO05D008241 4.3e-48 195.3 174 64.9
PSO135G1023 Papaver somniferum HOM05D006501 ORTHO05D008241 5.6e-48 194.9 168 63.7
Pp3c8_24130 Physcomitrium patens HOM05D006501 ORTHO05D008241 5.6e-48 194.9 123 78.0
Haze_08636 Corylus avellana HOM05D006501 ORTHO05D008241 2.1e-47 193.0 160 66.9
BcaB07g31511 Brassica carinata HOM05D006501 ORTHO05D008241 2.8e-47 192.6 189 57.1
MBI07_g24349_MAGBIO Magnolia biondii HOM05D006501 ORTHO05D008241 3.6e-47 192.2 132 75.8
Cpa.g.sc79.61 Carica papaya HOM05D006501 ORTHO05D008241 1.4e-46 190.3 171 60.8
CDE10G1320 Ceratophyllum demersum HOM05D000199 ORTHO05D001448 1.8e-46 189.9 125 73.6
BcaB07g31509 Brassica carinata HOM05D006501 ORTHO05D008241 3.1e-46 189.1 182 60.4
AagrBONN_evm.TU.Sc2ySwM_362.747 Anthoceros agrestis HOM05D006501 ORTHO05D008241 5.3e-46 188.3 118 78.0
SGA_v2.0_scaffold305G47943 Striga asiatica HOM05D006501 ORTHO05D008241 1.2e-45 187.2 140 70.7
Zm00001eb296420 Zea mays HOM05D006501 ORTHO05D008241 1.2e-45 187.2 128 76.6
SEGI_07201 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 1.5e-45 186.8 124 75.0
A09p14290 Brassica napus HOM05D006501 ORTHO05D008241 2.6e-45 186.0 169 62.1
C09p17200 Brassica napus HOM05D006501 ORTHO05D008241 3.4e-45 185.7 169 62.1
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 9.9e-45 184.1 171 63.2
TAR374G1465 Trochodendron aralioides HOM05D006501 ORTHO05D008241 2.2e-44 183.0 116 81.9
BcaC04g22628 Brassica carinata HOM05D006501 ORTHO05D008241 2.9e-44 182.6 169 61.5
TAR374G0759 Trochodendron aralioides HOM05D006501 ORTHO05D008241 4.9e-44 181.8 116 81.0
arahy.Tifrunner.gnm1.ann1.MC0I99 Arachis hypogaea HOM05D006501 ORTHO05D008241 8.4e-44 181.0 181 57.5
arahy.Tifrunner.gnm1.ann1.68SH35 Arachis hypogaea HOM05D006501 ORTHO05D008241 1.1e-43 180.6 130 70.8
Lsat_1_v5_gn_6_12120 Lactuca sativa HOM05D006501 ORTHO05D008241 1.4e-43 180.3 118 76.3
Mapoly0049s0020 Marchantia polymorpha HOM05D006501 ORTHO05D008241 4.2e-43 178.7 129 72.9
Atru.chr9.2018 Acer truncatum HOM05D006501 ORTHO05D008241 2.8e-39 166.0 179 55.3
Hma1.2p1_0952F.1_g241020 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 5.8e-37 158.3 114 73.7
Cre08.g376450 Chlamydomonas reinhardtii HOM05D006501 ORTHO05D008241 7.6e-37 157.9 126 62.7
Migut.E01245 Erythranthe guttata HOM05D006501 ORTHO05D008241 1.7e-36 156.8 99 76.8
Zm00001eb150250 Zea mays HOM05D006501 ORTHO05D008241 4.2e-35 152.1 118 71.2
SalBow8G4809 Salvia bowleyana HOM05D006501 ORTHO05D008241 1.0e-33 147.5 154 55.2
BcaC04g22630 Brassica carinata HOM05D006501 ORTHO05D008241 8.7e-33 144.4 88 83.0
CARHR046590 Cardamine hirsuta HOM05D006501 ORTHO05D008241 9.0e-30 134.4 123 60.2
QL02p031049 Quercus lobata HOM05D006501 ORTHO05D008241 9.0e-30 134.4 100 70.0
Thhalv10023703m.g Eutrema salsugineum HOM05D006501 ORTHO05D008241 1.3e-28 130.6 126 58.7
FvH4_5g04360 Fragaria vesca HOM05D006501 ORTHO05D008241 6.5e-28 128.3 108 64.8
Potri.001G093001 Populus trichocarpa HOM05D006501 ORTHO05D008241 8.4e-28 127.9 80 81.2
Carub.0002s0043 Capsella rubella HOM05D006501 ORTHO05D008241 1.4e-27 127.1 128 57.8
Ah.12g052370 Amaranthus hybridus HOM05D006501 ORTHO05D008241 1.0e-25 120.9 119 58.0
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 1.8e-25 120.2 68 83.8
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 1.8e-25 120.2 68 83.8
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 2.3e-25 119.8 109 62.4
SEGI_03665 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 2.2e-23 113.2 62 85.5
SGA_v2.0_scaffold144G35857 Striga asiatica HOM05D006501 ORTHO05D008241 1.1e-22 110.9 133 51.9
CBR_g30621 Chara braunii HOM05D006501 ORTHO05D008241 3.4e-21 105.9 67 77.6
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 8.5e-20 101.3 124 46.8
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.4e-19 100.5 128 48.4
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 1.6e-18 97.1 72 65.3
ECA233G1307 Erigeron canadensis HOM05D006501 ORTHO05D008241 1.4e-17 94.0 61 75.4
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.4e-17 94.0 129 41.9
Atru.chr9.2021 Acer truncatum HOM05D006501 ORTHO05D008241 8.8e-17 91.3 112 51.8
Lj2C170T10 Lonicera japonica HOM05D006501 ORTHO05D008241 5.7e-16 88.6 59 74.6
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 2.0e-13 80.1 89 48.3
RcHm_v2.0_Chr6g0301591 Rosa chinensis HOM05D001075 ORTHO05D008241 6.1e-10 68.6 60 61.7
MCO14G438 Micromonas commoda HOM05D006501 ORTHO05D008241 1.8e-06 57.0 85 42.4
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 1.8e-06 57.0 89 40.4


User provided reference genes

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