Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G001730 Citrullus lanatus HOM05D006022 ORTHO05D007649 0.0e+00 2323.9 1226 100.0
MELO3C005765.2 Cucumis melo HOM05D006022 ORTHO05D007649 0.0e+00 1953.3 1181 89.2
CsaV3_5G001870 Cucumis sativus L. HOM05D006022 ORTHO05D007649 0.0e+00 1936.4 1180 87.3
Sed0008879 Sechium edule HOM05D006022 ORTHO05D007649 0.0e+00 1756.5 1181 80.0
Cfa011987 Carpinus fangiana HOM05D006022 ORTHO05D007649 2.1e-273 946.4 1227 50.4
QL02p030100 Quercus lobata HOM05D006022 ORTHO05D007649 2.8e-273 946.0 1258 48.7
Thecc.03G300300 Theobroma cacao HOM05D006022 ORTHO05D007649 7.8e-268 927.9 1247 49.6
CiPaw.12G081600 Carya illinoinensis HOM05D006022 ORTHO05D007649 4.9e-262 908.7 1237 48.3
RcHm_v2.0_Chr7g0194241 Rosa chinensis HOM05D006022 ORTHO05D007649 1.9e-261 906.7 1236 48.3
Haze_09085 Corylus avellana HOM05D006022 ORTHO05D007649 7.1e-261 904.8 1329 46.7
Potri.001G089900 Populus trichocarpa HOM05D006022 ORTHO05D007649 7.9e-260 901.4 1238 49.2
Prupe.5G122300 Prunus persica HOM05D006022 ORTHO05D007649 3.0e-259 899.4 1274 47.3
Gohir.A08G112400 Gossypium hirsutum HOM05D006022 ORTHO05D007649 1.6e-257 893.6 1228 47.8
Gorai.004G132300 Gossypium raimondii HOM05D006022 ORTHO05D007649 3.7e-257 892.5 1227 48.3
Gohir.D08G125400 Gossypium hirsutum HOM05D006022 ORTHO05D007649 5.3e-256 888.6 1225 47.8
Duzib084G0652 Durio zibethinus HOM05D006022 ORTHO05D007649 5.8e-255 885.2 1245 47.1
MD14G1130300 Malus domestica HOM05D006022 ORTHO05D007649 7.6e-255 884.8 1241 47.9
GSVIVG01019556001 Vitis vinifera HOM05D006022 ORTHO05D007649 8.4e-254 881.3 1200 48.4
Actinidia22171 Actinidia chinensis HOM05D006022 ORTHO05D007649 6.0e-252 875.2 1233 48.6
Sabra01G0066300 Salix brachista HOM05D006022 ORTHO05D007649 2.8e-249 866.3 1255 46.5
Ciclev10018527m.g Citrus clementina HOM05D006022 ORTHO05D007649 4.0e-248 862.4 1226 46.7
Dinv38822 Davidia involucrata HOM05D006022 ORTHO05D007406 6.9e-248 861.7 1308 45.3
FAN18G0793 Fragaria x ananassa HOM05D006022 ORTHO05D007649 6.9e-248 861.7 1237 46.9
vmacro11345 Vaccinium macrocarpon HOM05D006022 ORTHO05D007649 2.0e-247 860.1 1244 46.7
FAN18G3678 Fragaria x ananassa HOM05D006022 ORTHO05D007649 4.5e-247 859.0 1239 46.8
CANSAT21G0687 Cannabis sativa HOM05D006022 ORTHO05D007649 1.3e-246 857.4 1212 47.0
Glyma.05G217800 Glycine max HOM05D006022 ORTHO05D007649 2.2e-246 856.7 1257 46.6
FvH4_5g04850 Fragaria vesca HOM05D006022 ORTHO05D007649 2.9e-246 856.3 1243 46.3
RhsimUnG0007600 Rhododendron simsii HOM05D006022 ORTHO05D007649 9.3e-245 851.3 1217 47.3
Glyma.08G023800 Glycine max HOM05D006022 ORTHO05D007649 2.7e-244 849.7 1219 47.2
Rhsim02G0245100 Rhododendron simsii HOM05D006022 ORTHO05D007649 4.6e-244 849.0 1215 47.7
MD06G1109300 Malus domestica HOM05D006022 ORTHO05D007649 1.6e-241 840.5 1261 45.9
FAN04G2854 Fragaria x ananassa HOM05D006022 ORTHO05D007649 4.8e-241 839.0 1238 46.2
Phvul.002G299600 Phaseolus vulgaris HOM05D006022 ORTHO05D007649 1.5e-239 833.9 1220 46.1
TWI81G0375 Tripterygium wilfordii HOM05D006022 ORTHO05D007649 5.9e-239 832.0 1268 44.3
Psat7g023280 Pisum sativum HOM05D006022 ORTHO05D007649 1.3e-238 830.9 1216 45.1
Ca_17472_v3 Cicer arietinum L. HOM05D006022 ORTHO05D007649 8.8e-235 818.1 1230 45.3
VMungo0251G1998 Vigna mungo HOM05D006022 ORTHO05D007649 1.3e-233 814.3 1220 45.7
Manes.01G050200 Manihot esculenta HOM05D006022 ORTHO05D007649 3.7e-233 812.8 1225 45.1
Medtr8g099585 Medicago truncatula HOM05D006022 ORTHO05D007649 3.4e-231 806.2 1209 44.5
Hma1.2p1_0359F.1_g135140 Hydrangea macrophylla HOM05D006022 ORTHO05D007649 6.5e-230 802.0 1227 46.4
Lalb_Chr05g0224031 Lupinus albus HOM05D006022 ORTHO05D007649 1.4e-229 800.8 1241 44.2
Atru.chr9.1963 Acer truncatum HOM05D006022 ORTHO05D007649 9.4e-229 798.1 1151 45.7
COL.COLO4_10720 Corchorus olitorius HOM05D006022 ORTHO05D007649 7.9e-228 795.0 1190 46.3
Lj4g0024036 Lotus japonicus HOM05D006022 ORTHO05D007649 7.9e-228 795.0 1214 45.2
arahy.Tifrunner.gnm1.ann1.MN1JRI Arachis hypogaea HOM05D006022 ORTHO05D007649 3.3e-226 789.6 1236 44.1
TAR375G1078 Trochodendron aralioides HOM05D006022 ORTHO05D007649 7.4e-226 788.5 1198 44.2
Nn1g00246 Nelumbo nucifera HOM05D006022 ORTHO05D007649 1.1e-221 774.6 1290 43.5
PGR042G3794 Punica granatum HOM05D006022 ORTHO05D007649 1.5e-218 764.2 1217 44.4
arahy.Tifrunner.gnm1.ann1.DK6PZW Arachis hypogaea HOM05D006022 ORTHO05D007649 1.5e-213 747.7 1219 43.4
Cc08_g16230 Coffea canephora HOM05D006022 ORTHO05D007649 3.2e-213 746.5 1235 44.0
Cpa.g.sc79.13 Carica papaya HOM05D006022 ORTHO05D007649 1.0e-211 741.5 991 49.6
Lj2A165T43 Lonicera japonica HOM05D006022 ORTHO05D007649 3.3e-210 736.5 1234 45.4
TPR.G3389 Trifolium pratense HOM05D006022 ORTHO05D007649 1.7e-209 734.2 1201 43.4
MBI07_g39841_MAGBIO Magnolia biondii HOM05D006022 ORTHO05D007649 2.0e-207 727.2 1353 40.5
Peaxi162Scf00117g00919 Petunia axillaris HOM05D006022 ORTHO05D007649 5.9e-207 725.7 1253 42.8
Nitab4.5_0004010g0010 Nicotiana tabacum HOM05D006022 ORTHO05D007649 1.3e-206 724.5 1236 42.6
Aqoxy5G04291 Aquilegia oxysepala HOM05D006022 ORTHO05D007649 4.2e-205 719.5 1283 41.8
Solyc12g055910.3 Solanum lycopersicum HOM05D006022 ORTHO05D007649 2.1e-204 717.2 1223 43.0
Sopen12g024380 Solanum pennellii HOM05D006022 ORTHO05D007649 2.1e-204 717.2 1224 43.2
CAN.G390.10 Capsicum annuum HOM05D006022 ORTHO05D007649 2.7e-204 716.8 1215 43.3
MSTRG.1801 Avicennia marina HOM05D006022 ORTHO05D007649 8.0e-204 715.3 1239 41.3
Hund14211 Selenicereus undatus HOM05D006022 ORTHO05D007649 4.0e-203 713.0 1207 42.8
EL10Ac5g12933 Beta vulgaris HOM05D006022 ORTHO05D007649 1.5e-197 694.5 1199 42.3
PSO170G1024 Papaver somniferum HOM05D006022 ORTHO05D007649 1.5e-197 694.5 1210 41.7
THA.LOC104807002 Tarenaya hassleriana HOM05D006022 ORTHO05D007649 5.5e-197 692.6 1238 41.0
AUR62010858 Chenopodium quinoa HOM05D006022 ORTHO05D007649 1.4e-195 688.0 1223 41.4
CSS0021468 Camellia sinensis var. sinensis HOM05D006022 ORTHO05D007649 7.5e-194 682.2 961 47.8
Migut.E01259 Erythranthe guttata HOM05D006022 ORTHO05D007649 2.3e-190 670.6 1214 40.7
ECA233G0648 Erigeron canadensis HOM05D006022 ORTHO05D007649 8.6e-190 668.7 1182 41.1
Nitab4.5_0004515g0030 Nicotiana tabacum HOM05D006022 ORTHO05D007649 2.8e-188 663.7 1153 42.9
HanXRQChr10g0316931 Helianthus annuus HOM05D006022 ORTHO05D007649 1.2e-186 658.3 1199 41.2
AT4G10930 Arabidopsis thaliana HOM05D006022 ORTHO05D007649 1.9e-181 641.0 1209 40.1
BraA03t12116Z Brassica rapa HOM05D006022 ORTHO05D007649 1.4e-179 634.8 1206 40.4
AUR62019856 Chenopodium quinoa HOM05D006022 ORTHO05D007649 2.3e-179 634.0 1229 40.0
Sp6g06550 Schrenkiella parvula HOM05D006022 ORTHO05D007649 2.3e-179 634.0 1197 39.7
AL6G45030 Arabidopsis lyrata HOM05D006022 ORTHO05D007649 1.2e-178 631.7 1211 40.3
A03p29210 Brassica napus HOM05D006022 ORTHO05D007649 2.0e-178 630.9 1206 40.4
Lsat_1_v5_gn_6_8380 Lactuca sativa HOM05D006022 ORTHO05D007649 1.7e-177 627.9 1180 40.1
Ah.07g197550 Amaranthus hybridus HOM05D006022 ORTHO05D007649 1.4e-176 624.8 1352 37.9
BolC3t15840H Brassica oleracea HOM05D006022 ORTHO05D007649 1.9e-176 624.4 1202 39.7
SGA_v2.0_scaffold111G31401 Striga asiatica HOM05D006022 ORTHO05D007649 1.2e-175 621.7 1192 40.8
BcaC01g04650 Brassica carinata HOM05D006022 ORTHO05D007649 6.6e-174 615.9 1202 39.6
C03p35290 Brassica napus HOM05D006022 ORTHO05D007649 6.6e-174 615.9 1194 40.2
BcaB01g02727 Brassica carinata HOM05D006022 ORTHO05D007649 2.8e-172 610.5 1202 39.6
Carub.0006s2968 Capsella rubella HOM05D006022 ORTHO05D007649 5.2e-171 606.3 1249 39.2
DCAR_029909 Daucus carota HOM05D006022 ORTHO05D007649 2.9e-161 573.9 1094 41.3
unitig_26.g9566 Utricularia gibba HOM05D006022 ORTHO05D007649 1.7e-158 564.7 1206 38.1
ATR0602G083 Amborella trichopoda HOM05D006022 ORTHO05D007649 3.9e-158 563.5 1260 36.3
Thhalv10028398m.g Eutrema salsugineum HOM05D006022 ORTHO05D007649 9.6e-157 558.9 1106 39.5
Eucgr.E00880 Eucalyptus grandis HOM05D006022 ORTHO05D007649 1.4e-152 545.0 844 44.5
CARHR255670 Cardamine hirsuta HOM05D006022 ORTHO05D007649 1.3e-150 538.5 1101 38.4
Zm00001eb209080 Zea mays HOM05D006022 ORTHO05D007649 8.2e-124 449.5 1246 34.3
SEGI_16880 Sequoiadendron giganteum HOM05D006022 ORTHO05D007649 1.0e-105 389.4 1124 32.6
Sc22g0004930 Simmondsia chinensis HOM05D006022 ORTHO05D007649 2.9e-105 387.9 775 39.2
Duzib205G1781 Durio zibethinus HOM05D006022 ORTHO05D007649 2.7e-95 354.8 468 49.6
HPP92_009829 Vanilla planifolia HOM05D006022 ORTHO05D007649 1.1e-80 306.2 885 32.0
Oeu023154.1 Olea europaea HOM05D006022 ORTHO05D007649 1.8e-78 298.9 440 44.5
Sc22g0004920 Simmondsia chinensis HOM05D006022 ORTHO05D007649 2.4e-67 261.9 419 43.7
Os12g0209700 Oryza sativa ssp. japonica HOM05D006022 ORTHO05D007649 3.9e-65 254.6 591 35.7
Pp3c6_15100 Physcomitrium patens HOM05D006022 ORTHO05D007649 1.9e-64 252.3 1400 26.9
Mapoly0002s0107 Marchantia polymorpha HOM05D006022 ORTHO05D007649 1.9e-59 235.7 866 30.5
Oeu009975.1 Olea europaea HOM05D006022 ORTHO05D007649 1.2e-58 233.0 385 43.1
TPR.G40773 Trifolium pratense HOM05D006022 ORTHO05D007649 6.0e-58 230.7 174 66.7
SHI06973 Sapria himalayana HOM05D006022 ORTHO05D007649 3.3e-56 224.9 324 45.7
SMO364G0157 Selaginella moellendorffii HOM05D003349 ORTHO05D003898 1.3e-49 203.0 1214 25.6
Oeu009974.1 Olea europaea HOM05D006022 ORTHO05D007649 4.2e-35 154.8 350 36.3
AagrBONN_evm.TU.Sc2ySwM_228.3550 Anthoceros agrestis HOM05D006022 ORTHO05D007649 4.6e-34 151.4 1335 24.3
Hund11381 Selenicereus undatus HOM05D006022 ORTHO05D007649 1.4e-27 129.8 220 40.0
Ah.12g052650 Amaranthus hybridus HOM05D006022 ORTHO05D007649 1.9e-19 102.8 144 46.5
Psat4g095080 Pisum sativum HOM05D006022 ORTHO05D007649 7.9e-18 97.4 191 35.6
Actinidia11683 Actinidia chinensis HOM05D006022 ORTHO05D007649 3.9e-17 95.1 112 52.7
Nitab4.5_0004515g0060 Nicotiana tabacum HOM05D006022 ORTHO05D007649 8.2e-15 87.4 54 72.2
CBR_g31499 Chara braunii HOM05D006022 ORTHO05D007649 5.5e-11 74.7 147 34.7
SGA_v2.0_scaffold130G34351 Striga asiatica HOM05D006022 ORTHO05D007649 7.2e-11 74.3 119 38.7
SGA_v2.0_scaffold169G38721 Striga asiatica HOM05D002942 ORTHO05D003270 1.6e-10 73.2 119 39.5
SHI06972 Sapria himalayana HOM05D006022 ORTHO05D007649 2.7e-10 72.4 84 47.6
HPP92_009830 Vanilla planifolia HOM05D006022 ORTHO05D007649 1.9e-08 66.2 107 41.1
SGA_v2.0_scaffold49G18107 Striga asiatica HOM05D006022 ORTHO05D007649 6.3e-07 61.2 116 35.3
TWI60G1065 Tripterygium wilfordii HOM05D006022 ORTHO05D007649 1.1e-06 60.5 119 36.1
SGA_v2.0_scaffold408G51088 Striga asiatica HOM05D006022 ORTHO05D007649 9.0e-06 57.4 63 47.6


User provided reference genes

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