Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 4.0e-142 508.1 253 100.0
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 1.5e-117 426.4 250 85.2
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 4.3e-112 408.3 210 95.7
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 7.6e-101 370.9 197 94.4
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 1.0e-92 344.0 236 71.6
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 2.9e-92 342.4 235 70.6
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 5.0e-92 341.7 249 69.1
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 7.2e-91 337.8 245 68.6
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 1.2e-90 337.0 253 65.6
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 2.7e-90 335.9 236 68.6
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 4.6e-90 335.1 236 69.5
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 6.1e-90 334.7 236 71.2
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.3e-89 333.6 235 69.8
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 5.1e-89 331.6 236 69.9
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 6.7e-89 331.3 236 67.8
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 8.7e-89 330.9 236 67.8
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 1.1e-88 330.5 248 66.9
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 1.5e-88 330.1 249 65.9
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 2.5e-88 329.3 245 67.3
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 4.3e-88 328.6 235 66.8
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 5.7e-88 328.2 235 70.2
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 7.4e-88 327.8 245 67.3
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 1.6e-87 326.6 191 85.9
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 1.6e-87 326.6 236 69.1
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 2.2e-87 326.2 237 69.6
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.8e-87 325.9 247 68.0
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 6.3e-87 324.7 248 66.5
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 1.8e-86 323.2 222 72.1
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.4e-86 322.8 234 67.9
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.4e-86 322.8 252 63.9
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 4.1e-86 322.0 234 67.9
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 4.1e-86 322.0 243 65.8
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 6.9e-86 321.2 248 62.9
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 9.1e-86 320.9 256 64.1
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 1.5e-85 320.1 222 71.2
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 1.5e-85 320.1 257 65.0
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.5e-85 320.1 260 65.0
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 3.4e-85 318.9 254 63.0
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 1.3e-84 317.0 248 65.3
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 1.3e-84 317.0 236 64.8
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 1.7e-84 316.6 240 65.4
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 2.2e-84 316.2 235 65.5
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 5.0e-84 315.1 236 66.5
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 6.5e-84 314.7 254 65.0
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 8.5e-84 314.3 239 66.1
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 1.1e-83 313.9 234 65.4
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.9e-83 313.2 253 63.2
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 4.2e-83 312.0 235 66.8
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 5.5e-83 311.6 233 67.4
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 9.4e-83 310.8 236 65.7
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 1.6e-82 310.1 235 67.2
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 2.1e-82 309.7 235 67.7
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 2.1e-82 309.7 235 67.7
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 2.1e-82 309.7 247 61.5
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 2.7e-82 309.3 236 65.3
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 3.6e-82 308.9 232 67.7
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 7.9e-82 307.8 235 67.2
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 1.5e-80 303.5 233 66.1
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 2.0e-80 303.1 235 66.4
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 2.0e-80 303.1 235 66.4
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 2.6e-80 302.8 236 66.1
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 3.3e-80 302.4 233 64.4
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 3.3e-80 302.4 237 64.1
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 4.4e-80 302.0 238 63.9
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 4.4e-80 302.0 238 63.9
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 7.4e-80 301.2 230 67.0
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 9.7e-80 300.8 257 61.9
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 1.3e-79 300.4 234 64.1
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 6.3e-79 298.1 231 64.9
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 6.3e-79 298.1 240 61.2
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 1.4e-78 297.0 237 63.3
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 1.8e-78 296.6 237 62.9
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 2.4e-78 296.2 246 62.2
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 4.1e-78 295.4 235 63.4
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 9.1e-78 294.3 234 65.0
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 1.2e-77 293.9 235 63.0
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 2.0e-77 293.1 233 61.4
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 2.6e-77 292.7 240 62.9
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 2.6e-77 292.7 269 57.6
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 3.4e-77 292.4 236 60.2
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 3.4e-77 292.4 240 61.2
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 4.5e-77 292.0 235 62.6
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 5.9e-77 291.6 190 75.3
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 5.9e-77 291.6 236 64.0
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 1.7e-76 290.0 246 61.4
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 2.9e-76 289.3 235 61.3
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 6.5e-76 288.1 235 60.0
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 1.4e-75 287.0 241 61.0
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 3.2e-75 285.8 238 62.6
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 5.5e-75 285.0 236 61.4
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 7.2e-75 284.6 185 73.0
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 1.2e-74 283.9 176 74.4
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 1.2e-74 283.9 242 57.9
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.6e-74 283.5 222 64.9
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 2.7e-74 282.7 175 77.1
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 1.0e-73 280.8 237 58.6
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.0e-73 280.8 276 54.7
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.8e-73 280.0 279 55.9
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 3.9e-73 278.9 236 64.0
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 5.2e-73 278.5 236 60.6
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 6.7e-73 278.1 175 74.9
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 6.7e-73 278.1 188 70.7
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.5e-72 276.9 237 62.0
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 2.0e-72 276.6 235 61.3
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 9.7e-72 274.2 248 54.8
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 6.3e-71 271.6 191 69.6
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 6.3e-71 271.6 251 54.6
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.1e-70 270.8 259 55.2
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 1.4e-70 270.4 235 62.1
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.4e-70 270.4 176 73.3
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 1.8e-70 270.0 221 63.8
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 3.1e-70 269.2 191 68.6
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 7.0e-70 268.1 192 67.7
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 9.1e-70 267.7 222 61.3
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.6e-69 266.2 277 53.8
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 3.5e-69 265.8 277 53.1
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 1.0e-68 264.2 174 73.0
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.3e-68 263.8 176 71.0
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 2.2e-68 263.1 183 67.2
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 2.9e-68 262.7 192 68.8
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 3.8e-68 262.3 189 68.8
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 6.5e-68 261.5 189 67.7
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 6.5e-68 261.5 235 55.7
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 3.2e-67 259.2 180 70.0
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 9.4e-67 257.7 276 52.9
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 4.7e-66 255.4 180 67.8
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 6.1e-66 255.0 155 79.4
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.4e-65 253.8 323 46.7
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.4e-65 253.8 170 71.8
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 1.4e-65 253.8 170 71.8
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 1.4e-65 253.8 235 56.2
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 4.0e-65 252.3 190 67.4
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 7.5e-64 248.1 244 55.7
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 1.3e-63 247.3 178 68.0
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.8e-62 243.4 162 70.4
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.2e-61 240.7 185 65.4
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 1.2e-61 240.7 167 65.9
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 4.2e-59 232.3 162 66.7
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 3.6e-58 229.2 232 54.7
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 5.2e-57 225.3 169 67.5
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.6e-56 223.0 138 76.8
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 3.1e-54 216.1 127 79.5
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 4.1e-54 215.7 140 70.7
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 5.4e-54 215.3 185 60.5
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 7.7e-53 211.5 142 69.7
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.0e-49 201.1 211 53.1
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.0e-49 201.1 211 53.1
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 2.6e-48 196.4 120 70.0
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 2.4e-46 189.9 125 71.2
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 8.9e-41 171.4 165 51.5
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 3.6e-34 149.4 216 40.7
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 1.2e-29 134.4 116 56.9
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 4.9e-23 112.5 98 56.1
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 1.6e-21 107.5 111 55.0
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 3.5e-21 106.3 152 43.4
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 1.1e-17 94.7 172 33.1
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 4.0e-17 92.8 60 68.3
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 2.0e-16 90.5 82 56.1
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 4.6e-13 79.3 48 64.6


User provided reference genes

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